RNA id: XM_034311738.1


Basic Information

Item Value
RNA id XM_034311738.1
length 2473
RNA type mRNA
GC content 0.41
exon number 3
gene id hoxc8a
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20370096 ~ 20386828 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGTCCCCATAACGTTGATTTAAATATTATCCAGGTGACCACAGTAAGTCAAGGTCATAAAATTGTAATGTCATGACGGTCCTGCAAAGCGCTGGGGGTGGATTTTATGATCTGCAAATATAATGTGCTGGTGCAGTAAAGATGCATTAAAAAGCGGAGTGGAGGAAGGCTAATCCACATACCCAGGCTTGCAATGTGCTGGCCTCACTGGCGCGCTCTGCGGGCTGTTATAGAGGCAGGAAGCCTGTTTAATGGCTCTGGAAAAACACAACGCTTACACACCAGGCAGTCGACATGGATGTACGATAagcatcaacaacaacaacaacagcagcaacaacaacaacaatcaatCAATACGTGGATCATATCATATACAGATAAACAGATTTCAAGAAAGGCCGAAAAGTACAAAGGTGGCGAGACGTTAGAGCCGACTTATTACGACTGTCGGTTCCCACAAAGCGTTGCACGAAGCCACACGCTCGTGTACGGACATGGAGCAGCTGCGCCGGGCTTTCAGCACCCGTCACATCACGTACAGGACTTTTTCCATCACGGCACCACAGGTATCTCTAATCCCGGGTATCAGCAGAACCCCTGCGCTCTGGCGTGTCATGGAGACGCGACGAAATTTTATGGATACGAAGCTCTTCCGAGGCAATCGCTTTATGGTGCCCAGCAAGAGGCGAGTCTAGCGCAATACCCAGACTGTAAATCGTCTAATAGCTCTAACCCTGGAGAAGGACAAGGCCACTTAAATCAAAATACCTCTCCCAGCCTCATGTTCCCATGGATGCGACCTCACGCTCCTGGGAGACGCAATGGGAGGCAGACATATAGTCGCTACCAGACTCTGGAGCTGGAGAAGGAGTTCCTCTTCAATCCGTACCTTACACGCAAGCGGCGGATTGAAGTGTCCCACGCGTTGAGCTTGACTGAACGGCAGGTGAAGATCTGGTTCCAAAACCGCCGAATGAAGTGGAAAAAGGAGAACAACAAAGACAAGTTTCCGGGTCAGAGAGGGGAGGCCGACGCCGAAGCCGACGAAGAGGGCAATGAGAACGGCGAGGCGGAAGAAACCGAAGACAAGGAAAcggaagagaaagaagaaagcaagGACTGATTTTATGGTCTTTTTATGGTTATATGGCGGACAGAAAGAGAAGACATTTCGGGGATAGCTGATGAAAGAGAAGACGCGCCAAACAGTTGGGtcaaaagtgagaaaaaaaatccacagacgTCAGTCTCTACATAAAAGCACTAAAATAGCTCTTCTAAAAAGTTATAATtagagaaaaaagataaaattatgTATTGCCTAACTGCACCGCTGTGAAATAGGTTACATAAGTAGGTTACCAATATGCATCAACCCATTCTTAAATTTTGTGATCTTAAAAGCATTATACCTCGATAATGGAGTCGCTTGTATTTCATACTTGGAAGAAGTTTCGAAAAATACCATAATATTAAGATAAGTCACGAGTAACAATAAATCAATATCAAGACTTTGTGAAATACTAGCATTTGAACGTTTACAGAGGTTGTAAACTCTCGTGTTGGTGTTGTATATAGAATTCGTCACAGTATTCTGGCATCATTGATATCAACTTGACAGAAGGATCCAATATAATTCCAATATCcaatatgccaaaaaaaaaaaaaaaaaaaaaaaagaatcctcGGAAAATGACAATGTTGCAGTAGCACCGttttaatgaaaatgacatTGACAAGTGTCGTAATGTGTATTCTGAATTTTACATGAATTAGTACTTGTAGTTTATTATCAAGCTTTGTGATGACGAATGGGCAAGATTgctttttgtaatgttttagttattttatgGGGATCACTAGAGATTGCAATCGTTTGAAAAATCTCGATAAAAGCTACCTAATCATGGGGAATTTGCAATATAGATTTCTACCTAAAGACTTAGTAAAATGTTGCTTTGTAGTATGTTGAAACCTAagttatattatttacaaactGAACACTTATGTTGTTCGAGCATTTAAGTCTTCAGAAGACTTAAGTAGCTCAGAGCCAAGCTAACAATTTCATGAAATTGTACTACGCCACTACCTAATTAGACAAAGCTTTGCCTATATAAAATGGTTAGTTTCTCCATATCAGAGAGCAgctttgtttaataaaatagtaataacagATTTCCCCCAACAACTTAAACTGCCTACAGAGAACGCATATTTGTGCGTAAAGTACCGTACTTGCTACAATTACTACACTACTTTGTTAAAGGAAATGTTGTTACTTTATCGTGCTGGTGTTATAGCGTAGATTTGAAATTGCACTGAGTGTAACCTCCATGTACGTCTTGTAATATCTTACTGTTACAATATGCTCGTTTTAACTGTTCCTCATGTGAATATAGACAGAAATATGTGTGTACATGCCACTGTTATTGACATCATCAGAAGAATAAACATGATGGCACATTC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09308 HOX_8; homeobox protein HoxB/C/D8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305179 lncRNA upstream 260870 20108390 ~ 20109226 (+) False G257803
TU305180 lncRNA upstream 260870 20108390 ~ 20109226 (+) True G257803
TU305178 lncRNA upstream 266056 20101008 ~ 20104040 (+) True G257802
TU305196 lncRNA upstream 270598 20099230 ~ 20099498 (+) True G257814
TU305195 lncRNA upstream 304088 20065477 ~ 20066008 (+) True G257813
TU305640 lncRNA downstream 180962 20567790 ~ 20576789 (+) True G258156
TU305646 lncRNA downstream 224713 20611541 ~ 20657067 (+) True G258162
TU305792 lncRNA downstream 276854 20663682 ~ 20680938 (+) True G258273
TU305795 lncRNA downstream 295542 20682370 ~ 20756538 (+) False G258275
XR_004579728.1 lncRNA downstream 310157 20696985 ~ 20699668 (+) True LOC117599265
XM_026920557.2 mRNA upstream 80 20366457 ~ 20370016 (+) True hoxc10a
XM_026920335.2 mRNA upstream 8817 20358172 ~ 20361279 (+) True hoxc11a
XM_026920252.2 mRNA upstream 19167 20347159 ~ 20350929 (+) True hoxc12a
XM_026920340.2 mRNA upstream 29549 20336971 ~ 20340547 (+) True hoxc13a
XM_026921439.2 mRNA upstream 101309 20232088 ~ 20268787 (+) True rarga
XM_034311743.1 mRNA downstream 2329 20389157 ~ 20431053 (+) False hoxc3a
XM_034311740.1 mRNA downstream 3586 20390414 ~ 20431053 (+) True hoxc3a
XM_026920560.2 mRNA downstream 8105 20394933 ~ 20398744 (+) True hoxc6a
XM_026920561.2 mRNA downstream 12868 20399696 ~ 20402543 (+) True hoxc5a
XM_034311741.1 mRNA downstream 16473 20403301 ~ 20431053 (+) False hoxc3a
TU304946 other upstream 891201 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 1337108 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 1458382 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 3249155 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 3861716 16508025 ~ 16508380 (+) True G256046
TU305571 other downstream 3981 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 123416 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 516277 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 516319 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 841492 21228320 ~ 21230871 (+) False si:ch73-290k24.5

Expression Profile