RNA id: XM_034311770.1


Basic Information

Item Value
RNA id XM_034311770.1
length 2245
RNA type mRNA
GC content 0.47
exon number 3
gene id si:dkey-109j17.5
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11247652 ~ 11254606 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agagaacccagaggaaacccacgctGACGCTGggagaactccacacagacagtgaccAGAGCTCAGGTCAGGATCGGACCGGCGACCTGGTGCTTTGAGGCAGCACTTAAATATGATTTCTTCTTGTTTCTGGCTGAAGGGATATTTGGATTTTTGGGAGGGTGGAAGAGTTTGTGACAAACAACAATATTAGTAAACCTGACTTTGCAAACTGGAATCAGGTTCACAGGCTTCGGGTGGAAGGTTTCCAAGTCCAgTTGAAATCGGCAATGAACAGCCTGGCTAAATTAACCTTGAGATGCTCTCTATTTTCCGTAAACATCAAGCAATGTACAATGagtttttaaggaaaaaagatGTCAAAAGAGAGGCCTATTCTTCTGGGGCAGTGCAGTCCTACACACCCGTAAGTGGGGCCAGTCGAACAGCTTCTCAGAGTGGGGCGGGAACAACCAAATTTGACCGGAGCGATCCACGACAGTCCCTCATTTCTGAAACAATTGCCAAGATGATCGTCCGCGACCTGCAACCTGTGCAGATTGTAGAGAATGAGGGCTTCCGTGAGCTACTTAAGCTCCTTGAGCCTCGTTACGTCCCAGAGCCGAGCCATTACATACAACAGCAGCTTCTCCCGGCTTACAGCTACCAAGTACAGCTAGCGACCAAGCTGGCTCTCTCAGGAGTCGAGACCTGCAGTATCACCCTGGACCTGTGTACGAGCAATGCTGTGTCTGTCAACAACAGTTCTGGCTACTTGGGCGTGACATGCCATTTCATAACCCCAGACTGGCACATCAAATCCACGCTATTATCATGTATTCCTCTCCAAAATTATAGGGACACACAGCGCATGCTCACTGAGTTCGACGAGATCTGTCATGTTCATGATATCTCGGGTAAGGTGTTTCGCATCGTTGCTGATCCCTCCCCTTGTGAAAACCGATCTACCTTCCGCCTGCCTGGTTTTTATCTCCATGGTAATGGTATTGTggaagatgaggaggaagatAGTAGTGATGAAGAAAATGGTGCAGGCGAAGGTAAGAATGCTGTTAGTGGAGCAGAAGAGCAGAATTCTTTAAATCAGTGCCTGGGTAGGTGTAGGATAGACTGCTTTGCCCATTCACTGAGTCAGTGCATACGGGAAGGGATCTGTTCCTCCTCTCAGATATCCACAACACTCACTAAAGCAGCTTGCTTCTACAACTATGTTGTTGCTACAGTTACTTCTGAAAAACTTAGTAAAGTCTTTGGTCCTGGCACAGTAGGAAATGGACAGCACCCATCAGCCTTGGACAGGGACTGGAACACCCAGCTAAAGAAAATGCGACAAATGCTTGAATCATTGGATTTTTTGGAGGACATTGTGGACAGAAATGACTTGGCTCTCAACAGTGTTGAAAAAGCCACTCTGCAAGAACTGGTTGAGATCTTGGAACCTTTTGAGGAAGCCACAGATATGGTCCAGGGAGACAAGCATGTTTCTATCAGCCTTGCCCTCCCCAGCGTTCTGGGCCTACGTAAGCATCTGGCAGAAGTTATGACACACCAGTGTGCAGGACTGGTTACAGGATTGACTCATGCACTGGACCAGAAATTAGCTGCCATCCTAGAGGATCCTCTATATGTCACAGCCACTACCCTGGACCCGCAGTTCAAGCTTTCTTGGAGCAGTGACCGGGACTGGCACAAGCAGGTTCTCCTGGAGGAGATGGGAAAGCACACCCAGCCTGTGAGTCCACCAGAGCCCAGTTCAGATGCTCAGCCATCCCCATCTAAACGCAGCAGACTATTCTCTTTCATCAAAGAAAGGCCCTCCACACAGGCCAAGAGTATGGAGCAGGAGCTGGCTGCATACCTGCATGAGGAGCCCACAGAAGAAGATCCCCTGCAGTACTGGAAGCGCAAGTCTATTGATTTTCCTCTACTTTCAGTAGTGGCCAAGAAAGTGTTTACAGTGCCAGCTACAACAACAGCTGTGGAAAGGATATTCTGCCTTGTAGGCAAAACCCTAAGACCCGAACACTGccgactccttccaaaaaactTAGATACACTGATTTATTTGAAGGCCAACTACAGCATATTGTGGTCTTAACTGCTTTAAAATGGCATATTTACAGGAAACTGACAGTAGATTTAGAgtacttggattttttttaattaaaggatgCCTCAAACCCGAAATCAATGAGCATAAAACTGCAGCATCACCCAAAGTAATATTAAACTGTTTTAGTCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299539 lncRNA downstream 156317 11089077 ~ 11091335 (-) False LOC113530615
XR_003403161.2 lncRNA downstream 156366 11089065 ~ 11091286 (-) False LOC113530615
TU299537 lncRNA downstream 156969 11089077 ~ 11090683 (-) True LOC113530615
XR_003403192.2 lncRNA downstream 208684 11037822 ~ 11038968 (-) True LOC113530895
TU299474 lncRNA downstream 224627 11021959 ~ 11023025 (-) False abhd6b
TU299705 lncRNA upstream 11366 11264909 ~ 11265149 (-) True G253174
TU299971 lncRNA upstream 99959 11353502 ~ 11354217 (-) True G253383
TU299973 lncRNA upstream 105972 11359515 ~ 11361585 (-) True G253385
TU299972 lncRNA upstream 109429 11362972 ~ 11364414 (-) True G253384
XR_003403134.2 lncRNA upstream 202477 11456020 ~ 11462531 (-) False LOC113530309
XM_026920567.2 mRNA downstream 5348 11238252 ~ 11242304 (-) True apobec2b
XM_026920729.2 mRNA downstream 131979 11114279 ~ 11115673 (-) True LOC113530590
XM_026920265.2 mRNA downstream 197917 11043263 ~ 11049735 (-) True atp6ap1lb
XM_026921269.2 mRNA downstream 208197 11030067 ~ 11039455 (-) False slmapb
XM_034311610.1 mRNA upstream 2521 11256064 ~ 11258687 (-) True ccdc115
XM_026920309.2 mRNA upstream 20547 11274090 ~ 11277676 (-) False fkbpl
XM_026920307.2 mRNA upstream 20547 11274090 ~ 11277121 (-) False fkbpl
XM_026920306.2 mRNA upstream 20547 11274090 ~ 11277119 (-) True fkbpl
XM_026920308.2 mRNA upstream 20547 11274090 ~ 11277117 (-) False fkbpl
TU299470 other downstream 232022 11013964 ~ 11015630 (-) False LOC113530950
TU299234 other downstream 608934 10636523 ~ 10638718 (-) False sinup
XR_003403171.2 other downstream 778118 10460694 ~ 10469534 (-) False usp21
TU298725 other downstream 1217659 10029492 ~ 10029993 (-) True G252373
XR_003403155.2 other downstream 2669052 8566656 ~ 8578600 (-) False ttll10
trnae-uuc_4 other upstream 5500 11259043 ~ 11259114 (-) True trnae-uuc_4
trnan-guu_24 other upstream 19787 11273330 ~ 11273403 (-) True trnan-guu_24
TU299993 other upstream 202478 11456021 ~ 11462706 (-) False LOC113530309
TU299994 other upstream 202478 11456021 ~ 11462706 (-) True LOC113530309
TU300077 other upstream 303344 11556887 ~ 11568530 (-) False avpr2ab

Expression Profile