RNA id: XM_026920576.2


Basic Information

Item Value
RNA id XM_026920576.2
length 4905
RNA type mRNA
GC content 0.42
exon number 13
gene id src
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17832401 ~ 17884017 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCTGAAaatctccctttctctctcccctcctaGTTTCTCCATAGCTTTAACGTTCAGCATTGTGGGCAGCTCCTCATTGTAACAGGTTTCTTCTTTTCGGCGACGGTTATTTGTTATGCCTTGTAGAAACCCTGGATAGCCTttgaattacaaaaaatatagtCTAAAGTAGGATATTCACAGCTACCGGAATCGCGGATATCCCCTTCATTACGAAAAACTGGTCATAATTAGGATGTTTGCAGCTGGCGTGCGGATTGTCAGGGATAGTCATGACCTCACTAACCCTCCCCTGTTCCctcactgactctctctcaATAGCTCTGGCTTATCGTCCTGTTTGCTGTGCATTTTTGACGATGGAAATCTGAGTTCGGCTCTTTTTGGAActactgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgagggagacaCCGGTGCAGCAAAAGGGAACACGCCGGGgcTTAGGACATGGGGGGAAACAAGAGCAAACCTGGAGACCTGGGCCAGCGCTCCCGGAGTTTGGATAGTACTGTTAACATGAACAGTGGGGGTGGCAGCACTGGTGGGCATCACCTCAACTTGTGCCAGCAGAGCTTCACACCCAACCGGACCCCTGTGGTGGATGGCTCACAGCATGGTGTCCAGAACATCACCAACAATGCTGAGCTGCCCTTGTTTGGAGGAGTGGAGTCCATGAACAGCCTCACATCACCTCTTCGTAGTACATTAACAGCAGGAGGCGTGACTACATTTGTGGCATTGTATGACTATGAATCACGCACTGCCTCTGATCTGTCATTCAGGAAAGGAGAACGGCTTCAGATAGTCAACAACACGAGAAAGATGAACTGCAGGGAAGGAGACTGGTGGCTAGCCTGCTCACTGACCACAGGACTACGCGGCTACATCCCCAGCAACTACGTCGCTCCTTCTGACTCCATCCAAGCTGAAGAATGGTTTTTTGGTAAAATTACCCGTAGAGATTCTGAACGGTTGCTGCTGAGTCTTGAGAACAGAAGGGGAACTTTCCTGGTCCGAGAGAGTGAGACCACCAAAGGTGcctactgtctctctgtcctggaCTACGACAACGTTAAAGGGCTGAATGTGAAGCATTATAAAATCCGGAAGCTGGACAGCGGCGGCTTTTACATTACCTCTCGCACGCAGTTTAATAACCTTCAGCATCTGGTCAGCCACTACCGCAAGCATGCAGATGGTTTGTGCCACTGCCTGACTGATGTGTGTCCAGTTCTGAAGCCACCACAGACTCAGGGTTTGGCTCGGGATGCCTGGGAAATCCCTCGTGACTCTTTGCGTCTAGACGTGAAACTGGGACAGGGCTGTTTTGGAGAGGTCTGGATGGGCACGTGGAATGGGACAACGCGAGTGGCCATTAAGACACTGAAGCCAGGCACCATGTCTCCAGAAGCCTTCTTGCAGGAGGCTCAGGTTATGAAGAAACTACGACATGAGAAGCTGGTGCAGCTCTACGCTGTGGTATCTGAAGAGCCCATTTATATTGTCACTGAGTATATGAGCCAAGGTAGTCTGCTTGACTTCTTGAAAGGCGACATGGGGAAGATGTTGCGGTTACCTCAGCTTGTTGACATGGCCTCACAGATCGCCTCTGGCATGGCGTATGTGGAGAGAATGAACTATGTCCACCGGGACCTCAGGGCCGCCAACATCCTGGTGGGAGAGAACCTGGTGTGTAAGGTGGCTGATTTTGGCCTCGCTCGCCTCATAGAGGACAACGAATACACTGCGAGGCAGGGTGCCAAGTTTCCTATAAAGTGGACTGCTCCAGAAGCCGCACTATACGGTCGCTTCACCATCAAATCTGACGTCTGGTCATTTGGGGTTTTACTCACTGAGCTGGCCACTAAAGGCCGGGTGCCATATCCAGGCATGGTGAACCGCGAGGTGCTGGACCAGGTAGAGCGTGGCTACAGGATGCCGTGCCCGGCAGAGTGCCCCGAATCCCTGCATGAGCTCATGCTTACATGTTGGAGGAAAGAACCTGAGGAACGGCCCACTTTTGAATACCTGCAAGGCTTCCTGGAGGACTATTTTACCTCCACAGAGCCACAGTACCAGCCGGGAGAAAACCTGTAAAGAAAATCCAGTATAGCGGTTTCATCTGGGAGCAGGAGAGAGCATGGAGACTTTCTGTACTGTGCTCCTTAAACAGAGCATGAGTGTTAACGTGACcgtttacatgcacattgaTTTTCAATCAAGTGCCAAGGCTAGGTACTCAAtactttaattttaaagttGTGCTATGTGACCATTCACTTGCACAGTGAAATGAGAGAACAGCTGCTTTCACCAGTTTacataattaaagaaaattgaCTGTACATAagtactgaatatttaaaatcaaGTCTTTCATTACGTAaacaaaatagcatttttaaatgtcacagaAGCAGAAGAATTCTGGAGGCTGGGCCAATCAGCTTTGAAGATATACTAATGATAAAGATAGCATAAGTGTTAGGTTACAGTTCACTTgtgtaattaaagaaaaaggcaaccatttctttattttaactcCAATATGGTTGACACAtgttcattattatatattacgtGTTTGCAGTTTTAAATAGTTGACAATGATTTCAAGAAAATGTCacttattgatttatttctaaCAAGcgtatatttgttatatttcagAGTTGTGGTAACTGACTAAGCTCTGAGGCGGAAGGTGGCTTGAGAAGAATGAGAGGCTGTGCTTTACCATTGTCCATAAAGAGAACAAACGCAGTGTTACAGCTCCTTGCACAGCTCATACACTTTTCTGCCTCAGAATGGTTACCACAAAACACATCTTTGCCTCCTATAAAAGACTGTAAAACAAATACAACTAATAGAGATGTTGTTGTTACTTGCCCTAGCTGTTTTTGTAGGTCAGTGAAGATCGATCATTAGCTTCTTTTTTCAACTCATATTTTAACCATGCCTTTGTTAAACTCTATTAGAGTATACTCCAGATCTGTCACTCTTCCTCTTGATGACCCCTATCTCACACTCCAACAACTCCACTGAGTCCTCCATCCTGTTCACTCCATTTAGGATACCCTATCACCCCATCCTTTTATTTCTCACGAGATATAAAACCATCAGGCAACTGGAGAAGACCCTTTAAGACACttgattgaattttattttatagttctCTCTTAGATGAGGAGATGTCTTAAACTGTCACTGTCTTCCAATACACATCTGACTGaactcctttaatgttgcctaGAAGATGACGTCCTATCTCCTGTTCCCTATTTCCTAAACTGGGATCAACTGGAAAAGGACAAAGACTGTCAAACAGCAATCATTTTTGAATCACACGGACAAGATCATATGGCAGATGGACTAAAGTCGTATTCAATGAACCGAGCAAATGAAGTGTTAGAGACCAAACTCTGAAATAAAGCAGCTGCCTTTAGTACAGCcttctaaataatttttttaaactatttgatttctttcttttaatattatgttttaattttctgaTATTATCCGATGTTTTCTGATAAGACTCAAATCTACTGACAAAGTCTTTTACAACTGTGTAGTTTTCTGCTTATCAGAGACATTTTTGTACAattctattatatataaaaatggtattttttattaatattatcattTGTTATCAGATTGTAATTTGTAGTTTAGTTTAAATTGTAAGTTAGGAATATCAATCTCCTCAAATCACCAAATGATGTGGCTTTGGGCACATGTgaagtgtttattgtgttgtaaGGCCTTTATATGTGCTTTTGCTTATATGTCTTAAAAAAAGCAGGAATGACATTAATCTTATCTTTTATGCTGAAACCACAATGTTTCGCTAATTATTAACGCTGCATATGCTTTACAAAGGGCAACAATATTAACGCTTACATATGCTTTTCACAGGCCGACAGTAGGATAAAATTTGACTTGAAATGTATGAATAACTGACACGTCATTCTACACATCACTGGATTTCTGATTATATGCAGACATAAGACAGAGTGTTCTCGCCTTCTTCCTTAATTTGTCTCTGACCTGTTCTGTTTTGTGGTGAGGAAAGAAGGTTTGTAGGAATCGTAGGGCATATTTATGCATAAGGATGGTGATTGGAACTGTGAATAGTAATAGTAGGAGAGTAGGTAGTCACTCGTGCACTGTTTCCTATCATGTGTGTTTGGTTGCTTTTCTCACTTTTGAGTGCTCTCGTGACACTGGACAGTTTGTAAATACTTTCTGGTCATGCTTAGTGTAAATATTCATATTGTTcagattattgtttttaattgtctCTTATGTCTCGACTACTCTCAAATCCCACACTAAGGAATGGTTTTGTAGAAACTGTTTAAACTTCAGCAAATTGCATAAGAAATCAGGAGTCTGTAAAACCATTGCATATTTCCACCTATAATTTCTTCTTCACCAACTGTGATTCGGTTAATTTTTTGGGAACAGATCCGGCACTGAGTTTTGATCTGGGTTAATGTGGTAATATATACAGTTGGGTGATGGTTAGTTATTTGACTAGCTGATATTCATCACAGCCTTTTcaaatttgttctttttaaccCACTATTCCTACATTTATAGCAAAGAAGAGCAAAGTTAGCATCTTTTCAAGATGCTGTTGTCTTCTCATGTGGCAGTGATATAATCAGCCTATGCAGTTTTTGCTCCTGTcttttttacctcttttttcCACAGCATTTTCTCTTGCTTACAGCATATTGTGCAGTTCTGTTATGCCATGACCTTTTCCTTATATAGACTTTGCAATGAGAGATGTATACTTCAACTGTTGATACATTGATATCTTTTCTAAGTGCAATAAACTACATTTCTAAAGTTTGGATTTTGAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007049 cell cycle biological_process
GO:0001878 response to yeast biological_process
GO:0007155 cell adhesion biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303780 lncRNA downstream 41494 17790641 ~ 17790907 (-) True G256689
TU303706 lncRNA downstream 98352 17733806 ~ 17734049 (-) True G256623
TU303705 lncRNA downstream 99938 17732097 ~ 17732463 (-) True G256622
TU303696 lncRNA downstream 110468 17721723 ~ 17721933 (-) True G256613
TU303681 lncRNA downstream 133004 17699198 ~ 17699397 (-) True G256598
TU303854 lncRNA upstream 5741 17884243 ~ 17885579 (-) False kcng1
TU304027 lncRNA upstream 407313 18285815 ~ 18286091 (-) False znf217
TU304084 lncRNA upstream 470341 18348843 ~ 18349692 (-) True G256929
TU304576 lncRNA upstream 774591 18653093 ~ 18653315 (-) True G257322
TU304681 lncRNA upstream 930561 18809063 ~ 18860788 (-) True LOC113530357
XM_034311986.1 mRNA downstream 4442 17791380 ~ 17827959 (-) True mical1
XM_026920975.2 mRNA downstream 53551 17766209 ~ 17778850 (-) False camk1gb
XM_026920974.2 mRNA downstream 53726 17766209 ~ 17778675 (-) True camk1gb
XM_026921214.2 mRNA downstream 75846 17755592 ~ 17756555 (-) True g0s2
XM_026920241.2 mRNA downstream 78057 17747282 ~ 17754344 (-) True taf8
XM_026920580.2 mRNA upstream 6582 17885084 ~ 17913256 (-) True kcng1
XM_026921137.2 mRNA upstream 67185 17945687 ~ 17973544 (-) False nfatc2a
XM_034312047.1 mRNA upstream 67185 17945687 ~ 17972771 (-) False nfatc2a
XM_026921136.2 mRNA upstream 67185 17945687 ~ 17971822 (-) True nfatc2a
XM_026920428.2 mRNA upstream 107005 17985507 ~ 18032167 (-) True LOC113530442
XR_004579680.1 other downstream 136803 17676565 ~ 17695598 (-) True LOC117599224
XR_004579669.1 other downstream 1001142 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_003403156.2 other downstream 1137371 16647823 ~ 16695030 (-) False fam50a
TU302676 other downstream 2012247 15715035 ~ 15820154 (-) False znf512b
XR_003403204.1 other downstream 2344542 15487757 ~ 15487859 (-) True LOC113530990
TU303855 other upstream 14579 17893081 ~ 17913277 (-) False kcng1
XR_004579746.1 other upstream 406984 18285486 ~ 18300687 (-) False znf217
TU304189 other upstream 630653 18509155 ~ 18513257 (-) False LOC113530839
XR_004579689.1 other upstream 1059408 18937910 ~ 19064582 (-) False lrp1ab
trnak-uuu_17 other upstream 1249962 19128464 ~ 19128536 (-) True trnak-uuu_17

Expression Profile