RNA id: XM_026920609.2


Basic Information

Item Value
RNA id XM_026920609.2
length 2445
RNA type mRNA
GC content 0.44
exon number 16
gene id ndrg3b
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13635812 ~ 13699042 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGAgccagcacagacacacacgcgtgtatatacagtctctctctctctcacactcactctctctcacacacacacactttgcgtCTCCTTCCTGCTCCTGCTGTATTCCCCTAGCAACACGaacTATTGACAGCTGTTCATTGCAAGGATGGATGAGTTACAGGATGTGCAGCTGACCGAGATTAAGCCCCTCCTGACAGACAAAAATAGCCGAAACTTTCAGGATTTTGACTGCCAGGAGCATGACATCGAGACCCCCCACGGTGTTCTCCATGTCACTTTGAGAGGAACACCTAAAGGCAACCGGCCAGTCATCCTTACATACCACGACATAGGCCTTAACCATAAGTCATGCTTCAACACGCTTTTTAACTTTGAGGACATGCAGGAGATCACGCAACATTTTGCCGTGGCCCATGTGGATGCTCCAGGCCAGCAGGAGAATGCAGCACCTTTCCCCACTGGgtatcAGTACCCTACGATGGATCAGCTGGCTGAGATGCTGCCCTCAGTCCTGACCCACCTAAAGATCAATAGTGTGATTGGCATTGGTGTTGGCGCTGGAGCCTACATTCTCACCAAACTGGCGCTGAATCAGCCTACACTGGTAGAGGGACTGGTTCTTATTAATGTGGACCCCTGTGCAAAAGGATGGATGGACTGGGCTGCCTCAAAGTTGACAGGATGGACCAGCAACCTGGTGGACATAGTGATGGCACATCATTTCAGCACAGATGAGCTGACAGAAAACCAGGAGATCATTCAGACATACCGTCTGCACATCGCTCAGGATATGAACCAGGACAACCTGGCGCTGTTCTGCAACTCCTACAACAGCCGCCGGGATCTAGAGATTGAGAGGCCCATCATAGGGCTTAACGAGGAAACTGTCAACACTCTGAAgtgtcCTGCGTTGCTAGTTGTGGGTGATACATCTCCAGCTGTGGAGGCCGTTGTTGAGTGTAACTCGAGGTTAAACCCCACAAAGACCACCCTTCTGAAGATGGCTGATTGTGGTGGGCTGCCCCAAGTCGTACAAcCTGGTAAACTTGCTGAGGCCTTCAAGTACTTTGTCCAGGGCATGGGTTACAtgccCACTGCTGGCATGACACGCTTGGCACGCTCTCGTACCCACTCAGCTTCCAGCATGAACTCTGCAGAAGGTGCGCGTAACCGCACTCACAATAACGCTCAGCCGGAGGGCGCTGCTGCCAGCCCAGGTCACGAGAACCAAGCCAGACCACAAACCATGGAGGTGTCCTGCTAAATCTGATAAATCTGCCTCTAATTATGTCTCCTTATGCCACATTCTCTCTCATATTTTTCTCTCATAATCCTGAAACCAGGCTTCTGGTGTAATTAAACAATGCAAAGTATGACTATTGAAATGCATTCACAGTCTgcacacacgtttttttttttttttttagtcttaatCGGTTCCTGATATGTGCATATAATGAAGACTGATGTCTCTTGGATAGAAGTGTTCATGTTCAGAAGGCACTTGTTAGTGAGAAGGATACATCTTCCTATTGCTTTTTCATACTATACAGAAGACCAAACCACATCTCACTTCTCTCCGTCCGTCCGTTCATTCATGCAGCACCATTGacttgtatatttttttcctgttgaccacagctttctgttcttctgtCAATATTATGTGCTTTGTGAAAATATCAGTCTCTAGATTGCAGAATAGTTGTTGACCTTGTTTTCCTGTACATTCTCACAAAAAATCTACTGATAAGCATGTCCTTTTTAATGTAACTTAATGGAAGTGTATATTGGGATTTGTTTTGTTCAGCTGTTTCTGCAGATACTGTAGACCTCAACCACCCATGGGGTAACTTTGCACTGTAACACAGATGTATTGATATATTTAGCCCAGAACACAGTTTTTCTGATATAGCTGCCTTTCAGTAAATTCTTATGAGTTCTAGGTAAAACACATTTAGAGAGAATGACCTGGGCAGAACAACCAACTTTGCATACACATTAGTCTCTAGATCCTGTtgagagaggaaaacagagacaTGGTCATTCATTAGAATCTCGTAATAGTTATAgtgaatttaataatttaaactaTACACTCCCTGGAACATAAATACTGACAAGGGGGTATGGTTTCAACTTATTCCACCCCTCCTGTACAGTGGATAGATATTCCAGTTTACTTGAACTGTACTGATTACTTCCTCTATTAAATTTTgtagttatattattattattattattattattattattattattactactaatatAAATACTATTGCTATAATGTTTCCTTGGATGTGTATTCATTGTTGCTCTATGATTGTACTGCCTTGAGTGTGACATCAGGCTTTGTCCTCCAAGCATATAGGGGGCGCTGTACTTCTGCTGAGTGTATTGATTTGTACTAATTAATAAAGTTAGAGGTTATACATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301384 lncRNA downstream 21149 13614428 ~ 13614663 (-) True G254587
TU301365 lncRNA downstream 44842 13590500 ~ 13590970 (-) True G254568
TU301036 lncRNA downstream 147319 13428290 ~ 13488493 (-) True G254270
XR_004579752.1 lncRNA downstream 170597 13464191 ~ 13465215 (-) True LOC117599295
TU300928 lncRNA downstream 384459 13251140 ~ 13251353 (-) False oprl1
TU301364 lncRNA upstream 967 13700009 ~ 13700405 (-) True G254567
TU301888 lncRNA upstream 831783 14530825 ~ 14532588 (-) True G255020
TU301946 lncRNA upstream 1001182 14700224 ~ 14704270 (-) False G255071
TU301947 lncRNA upstream 1001182 14700224 ~ 14704270 (-) True G255071
TU302215 lncRNA upstream 1176602 14875644 ~ 14878506 (-) True G255306
XM_026920173.2 mRNA downstream 3791 13625898 ~ 13632021 (-) False sla2
XM_026920172.2 mRNA downstream 3791 13625898 ~ 13632021 (-) True sla2
XM_026921347.2 mRNA downstream 184438 13440784 ~ 13451374 (-) True tcea2
XM_026920113.2 mRNA downstream 351927 13251333 ~ 13283885 (-) True oprl1
XM_034311548.1 mRNA downstream 378086 13251332 ~ 13257726 (-) False oprl1
XM_026921355.2 mRNA upstream 1394 13700436 ~ 13721730 (-) False phf20b
XM_026921354.2 mRNA upstream 1394 13700436 ~ 13721730 (-) False phf20b
XM_026921353.2 mRNA upstream 1394 13700436 ~ 13721730 (-) False phf20b
XM_026921352.2 mRNA upstream 1394 13700436 ~ 13721730 (-) True phf20b
XM_034311623.1 mRNA upstream 1394 13700436 ~ 13718547 (-) False phf20b
TU300417 other downstream 1476452 12158772 ~ 12159360 (-) False ptk6b
trnae-cuc_33 other downstream 1494639 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 1742810 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 1743392 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 2067282 11556887 ~ 11568530 (-) False avpr2ab
XR_004579685.1 other upstream 430174 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 430174 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 430174 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 430174 14129216 ~ 14146831 (-) False LOC113530423
TU301948 other upstream 1000230 14699272 ~ 14704270 (-) False G255071

Expression Profile