RNA id: XM_026920627.2


Basic Information

Item Value
RNA id XM_026920627.2
length 3434
RNA type mRNA
GC content 0.43
exon number 15
gene id uckl1b
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15608285 ~ 15652605 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTACCTCTAACCTCATTTTGTGAGAGGCAGCAGGCAGTAACAGGAGTCTCTCCTTCATTGCTCAATTGCGATACCAAGTGCCACTGCCAGATGCCCAGTGCTGTTAGAGGCCTGTGTAGGGTGCTGTGTGCTACTGACAGGAGGAGGGCTCCAACCTGCAGCTATTAATACCACCACCAATAGAATCTTTGGGGAGAGCTTATCCTCTTACGTTGGCTGGATAGTAcaggagggaggggagagatagaggcagtgagacacagagagcagCAGGAGCTCTGACGCAGTTTCATTTCTGAAGAATTCTCCTTTACAAtataaaaagaagaacaaaacaaatgtgTAACTCatagttttgtttcttttctctttccttttgtctctctctctctctctctctctgtctctcttgcttgctcctttctcttcatctctctctgtctctatcagtTTCCTTTTTACACTCTCTCGCTTGGCACCACATACTTACTTGCCAGAGGGCATGTAATGCTATTAGCTTTGTACCCATATGTTTTTATGTGACCCTGTCTACGTACATGCTGGCTCCAGGGCAGCAAGCTGATATATAAGCACAGTCCTCAGTTAGGAACCTTTTTCTCTTGCTTGCTCACCATGAACACACTGCCAGGCTTGTTTGGAGCCAGGATCTCAGGCTGCTGGGCTTTAAGGGCAGACAGAAGTGGGGGAGGTGAAGGCTCTCTGGACAGGCTTCTCCCATCTGTCAACACAGGTCTGTCACCACGCAAACGAACCACCAGCCAATGCAAATCAGAGCCCCCCCTGCTGCGCACAAGCAAGAGAACCATCTATACAGCGGGTCGTCCACCCTGGTACAACGAACATGGCACCCAGTCCAAAGAAGCATTTGTCATTGGTCTTTGTGGAGGAAGTGCTTCTGGTAAAACAACAGTAGCCCGGAAGATAATTGAAGCTTTGGATGTTCCTTGGGTTGTGCTCCTTTCAATGGACTCCTTTTACAAAGTCCTTTCAGATGAAGAACAGTTGCTAGCTGCAAGCAATGACTATAACTTTGACCACCCGGATGCATTTGACTTTGACCTGCTTGTCTACACACTCCGAAAACTTAAACAGGGCAAGAGTGTGAAGATCCCAGTGTATGACTTCACTACACATGGCCGTCAGAAAGAGTGGAAAACTGTGTATGGTGCCAGTGTCATTATATTTGAAGGAATCATGTCCTTTGCAGATAAGGAGTTGTTGAAGTTGTTGGACATGAAAATATTTGTGGATACAGATTCTGACATACGGCTGGTACGGAGGCTTAGGAGAGACATTTCTGAGCGTGGTCGAGACATTGAAGGAGTTATCAAACAGTACAACAAATATGTAAAGCCTGCGTTTGAACAATATATAGAGCCGACCATGAGACTAGCAGATATTGTTGTGCCACGAGGGGGTGGGAACATGGTAGCTATTGATCTGATTGTTCAGCATGTGCACAGTCAGCTGGAAGAGAGGAAACTCCGCTGGGATATGGCGGCGCTGGCCTCTGCCCATCAAGCTCAGCCCCTACCCCAAACTCTCTGTGTTTTGGAGAGCACGCCGCAGGTCCGCGGTATGCACACCATTATCAGGAATAAAGAAACAAGCAGAGATGAGTTCATCTTCTACTCCAAAAGGCTGATGAGACTCCTCATTGAGAGAGCActctccttccttccatctCAGGTTCGTGTTGTTCACACCCCACAAGGCCAGGACTATGAAGGAAGGACCTTTCAAGGGAAGAGGGTCACAGGGGTATCCATCCTCAGAGCAGGAGAAACCATGGAGCCTGCACTCAGAGCCGTCTGCAAAGATGTCCGTATTGGCAAGATTCTAATCCAGACCAATCAGGACACAGGAGAGCCTGAGTTGCATTACTTGCGTCTGCCCAAAGATATCAGCGAGGACCATGTGATCCTTATGGACTGTACTGTGTCCACTGGTGCAGCGGCCATGATGGCAGTACGAGTCCTACTGGACCATGATGTACAGGAGGATAAAATTCTGTTGGTGTCTCTGCTGATGGCTGAGATGGGGGTCCACTCAGTAGCCTATGCCTTTCCTCAGGTCAAAATAATCACCACTGCTGTTGACAAAAAGGTCAATGACCTTTTCCACATTATTCCTGGCATAGGGAACTTTGGAGATCGGTACTTTGGCACTGATGCACCGCCTGATTGGAGTGACGAAGACATGGATGAGCCCAGCTGGTAATAGCTACACTGATCCTGCTGATTTTGAGCCATGTGGACAGGACTTTACAATTAATGCACTACAGACCTAATGGGTCTGACTTTCAAAATATAGTTATATACCACAAGCAGTtgtcaaatattttatataatttttaatgtcTTGGAAATATAGCATAttgaagtttttaaaaatgtgaacatttatttaaaaaaatattgaattgtATATTAAAATGTCTGTGGTATTGTTCTATGACAATTTTacaatattgttttattgtcaagtgaatgtgattatttatttttagtaagtTGCTTTTatgcttcattttctttcttttgtttgtttctgtttagaGTTACAGCTTTCTGTAAACACATTGAAAAACAGGTCTACCGCACAAACTGAGCTCTTGTAACGACCACTTCATCGGAAAATGTGTGTGGGCGTTGTTTCTTTAACTTGGTTTCCCCTCTACCTGCAAAAAATTGCTGACCAAACCATGATAGTCCGTTAATGTTGGGCTTGACCTTTTTAGAACAGTGAACTGAGTTTGTGGCCTACAAATATatatctgctttattttttatttacaaacatgCCTAAATTTAGGTGAAAATGAGAACTGGTCCGTCCTCATCCTGCTGAGCATGATTTatcagggtgtttttttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaacctttGTAAACACTTCCTTATACAAGTCTGAAGTACAAGAATTGAATTTGGCACTTTCTAGAGCTGTGACACAATAGCAAGGCAAAATAGCAAAGCAAAATTTGTACTAGATATTtcgtccaaaaaaaaaaaaaaaaaatgagtgaattATGTGGTGACTTTTTCAAGATATATTCTGTACATATACCTCATGTAAGGTATACATACAGAATGTATCTTGGAGTACAattgtacagatttttttcatatatatatatataatatatatatacacacacactcacactcacatacacacaataaatacaaacacactgatAAGGGGTTCCTCGACAGTTCTTTGGATGATTCTAACTTTACCCATAATGTAGACTTAATTAAGATCAACAACCTTCCTGTGAATATTTTGGTAAAGAAAGACCACGTGTGTTCTGTGTACAAGTGCAAGCATGTCTGACTTATCCTCAGCATTGAATAATTATCATAAATAGTACtgact

Function

GO:

id name namespace
GO:0044206 UMP salvage biological_process
GO:0044211 CTP salvage biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004849 uridine kinase activity molecular_function

KEGG:

id description
K00876 udk, UCK; uridine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302438 lncRNA downstream 153931 15454133 ~ 15454354 (-) True G255506
TU302361 lncRNA downstream 275834 15332126 ~ 15332451 (-) True G255435
TU302326 lncRNA downstream 348180 15258485 ~ 15260105 (-) False LOC113530775
TU302304 lncRNA downstream 380325 15182157 ~ 15227960 (-) False G255385
TU302303 lncRNA downstream 422313 15182157 ~ 15185972 (-) True G255385
TU302664 lncRNA upstream 8905 15652847 ~ 15657703 (-) True G255693
TU302681 lncRNA upstream 99798 15743740 ~ 15820154 (-) False znf512b
TU302675 lncRNA upstream 163761 15807703 ~ 15820154 (-) False znf512b
TU302753 lncRNA upstream 199649 15843591 ~ 15849718 (-) True G255772
TU302767 lncRNA upstream 237349 15881291 ~ 15881909 (-) True G255781
XM_026920467.2 mRNA downstream 47171 15466057 ~ 15561114 (-) False zbtb46
XM_026920465.2 mRNA downstream 47174 15466057 ~ 15561111 (-) False zbtb46
XM_026920471.2 mRNA downstream 47190 15455518 ~ 15561095 (-) False zbtb46
XM_026920470.2 mRNA downstream 47211 15455518 ~ 15561074 (-) True zbtb46
XM_026921258.2 mRNA downstream 156935 15425512 ~ 15451350 (-) False lmod3
XM_026920962.2 mRNA upstream 14394 15658336 ~ 15820241 (-) False znf512b
XM_026920960.2 mRNA upstream 14394 15658336 ~ 15820241 (-) False znf512b
XM_026920961.2 mRNA upstream 14394 15658336 ~ 15820240 (-) False znf512b
XM_026920963.2 mRNA upstream 14394 15658336 ~ 15820239 (-) False znf512b
XM_034312237.1 mRNA upstream 14394 15658336 ~ 15819846 (-) True znf512b
XR_003403204.1 other downstream 120426 15487757 ~ 15487859 (-) True LOC113530990
TU301948 other downstream 904015 14699272 ~ 14704270 (-) False G255071
XR_004579686.1 other downstream 1457704 14129216 ~ 14150581 (-) False LOC113530423
TU302676 other upstream 71093 15715035 ~ 15820154 (-) False znf512b
XR_003403156.2 other upstream 1003881 16647823 ~ 16695030 (-) False fam50a
XR_004579669.1 other upstream 1169442 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_004579680.1 other upstream 2032623 17676565 ~ 17695598 (-) True LOC117599224
TU303855 other upstream 2249139 17893081 ~ 17913277 (-) False kcng1

Expression Profile