RNA id: XM_034311846.1


Basic Information

Item Value
RNA id XM_034311846.1
length 3487
RNA type mRNA
GC content 0.52
exon number 22
gene id sulf2b
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13814838 ~ 13947569 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCAAAGAGGGAGGCATGTTTCAACAGATGGCTCTTGGTGTCCCAGTTCAGCCAGCGCTATTGCTCTACCACACTTAAACCTGTCCTGTCTAAAAGAAAGGAAGAtaacaagagaaaaagagagacagagacagagaaggagggagTGTAGTTTAGCTTGGGAAACTGAAACTGCTTAGACAAGAACTTCTGCTTTTCAGTTTCCTGTGTCTCAAAACTTTTTTCTCCACCCTGTCTTCCATTCACTGCTCCTATGACAGGCGTCCTTTACAGAGTTTTGTTCAGTCTTAAGTGGGAGTGCACCAAAGGAGATAGATagtgggagggagggagagagagagagagagagagagagagagggagagagggaataCAGGAGAGAAGTGTGGCGTGACTGGGACATTGCTCAGTGTTGCTCCCTCAGCTTTGGGGGTTCCTCTGCAAGACATAAGGGACAAAAGCGCCACCTGCTCCCTCTCCAGCAGTTTCCATTGGACCTGCAGTCTGGTGTGTCAGGCCCAGAGTCTCGGCATCTGCCATACAAAGGAATTCCCATCAGCCGTTAAGGGGCCGAACCGAGGCTTGACAGAGATTAGCAGAGCTGCATAAAGTGCCACGAGGCTGCGCACAGGCTGCAGACAGACTGCTGTCCTTCTCCATCAGGCACTTTGAAGGGAGGCAGCAGGTAGTCTGAGCAGGAGACCAGGCGTGGTAGCAGGGGctagaggtcagaggtcatggcCATGACGACCAGCCAGTTGGTGGTGCTGCTGGCCGTGGTAGCAGTGGCCCATGCCTCCGTCTTTCTCTCCGGCCAGAAACTGAAGCCTCGATTCCAGCGAGACCGCCGTAACATCCGCCCCaacatcatcctcatcctcactgATGACCAGGACATTGAGCTGGgcTCCATGCTGGTGATGAATAAGACACGGCGGATCATGGAGCAAGGTGGCACGCACTTTTCCAACGCTTTTGTGACAACGCCCATGTGCTGCCCATCACGCTCATCCCTCCTGACTGGCAAATACGCACACAACCACAACACCTACACAAATAATGAGAACTGCTCATCTCCCAGCTGGCAGGCCCAGCATGAGCCGCGCACCTTTGGAGTCTATCTCAACAACACAGGCTACAGGACAGcaTTTTTTGGGAAATATCTGAACGAGTATAATGGCAGCTACATTCCCCCTGGTTGGAGAGAGTGGGTAGGGATGGTGAAGAACTCCCGCTTCTACAACTACACCATCTGCAGGAACGGCGTCCGCGAGAAACATGGATTCGACTACTCGCAGGACTATCTGACAGACCTGATAACCAACGACAGCGTCAATTACTTCCGCATGTCCAAGAAAATCTATCCTCACAGGCCAGTGCTGATGGTGATCAGTCACGCCGCCCCCCACGGGCCAGAAGACGCGGCGCCGCAGTACTCCTCCTCCTTCCCCAACGCATCCCAACACATTACTCCAAGTTATAACTATGCTCCAAACCCGGACAAGCACTGGATCATGCGCTATACTGGTCCCATGAAACCCATCCACATGGAGTTCACCAACATGCTGCAGAGGAAGAGGCTGCAGACGCTGCTGTCTGTCGATGACAGCGTGGAGAAGATTTATAATATGCTTGTGGACACTGGCGAGTTGGACAACACGTATGTTATCTACACCTCTGATCACGGCTACCATATCGGGCAGTTTGGACTGGTCAAGGGCAAATCCATGCCTTATGAGTTTGACATACGAGTTCCTTTCTATATACGAGGCCCCAGTGTGGAAGGAGGAACCATCAACCCCCACATTGTGCTGAACATCGATCTGGCCCCCACCATTCTGGACATCGCCGGGCTCGATATCCCTCCAGACATGGACGGCAAGTCCATCCTCAAACTGCTCGACACTGACAGACATATAAACAGGTTCCAGGTCAACAAGAAGGGGAAAGTATGGAGGGACTCCTTCCTGGTGGAGAGAGGCAAACTACTTCATAAAGTAGTGCATGACGGGAAGGACGTGGCACAAGAAGAGAACTACCTTCCCAAGTACCAGCGAGTCAAAGACCTGTGTCAGCGTGCTGAGTACCAGACACCCTGCGAACAGATTGGACAGaAGTGGCAGTGTGTGGAGGACTCCACCGGGAAGCTGAGGCTATATAAGTGCAAAGGCATGGCCAGTCTTTCTGCAGTGAGGAAACCAGTGTCCAGCATGAAGCCCCAGTTTTACCAACGCACTGTTAGCACCAGTGCTAAAGTTAACACAGAGTCTGATGACTGCGACTGTGACTTCAGCAGCTACAGACTTAGCACGCTGAAGAAAAAGACCCTGCTGTCCAAAAAAAAAATGAAGACGCTGAAAAGCTACTCCAGGAACCGCTATGCTCGCTCGCTGTCTGTGGAGATAGATGGAGATCTAtatgcagtggatctggatggTGAATACCGACCAATCAACAGCAGGAACCTGAGCCACGCCCACCAGGAAGAGGAGTTGTTCAGCGGGATGGGTCCAACCTCTGAGCCGCAAACCAGCAACAGCCTGACATTGCCCTCATCTATTAAAGTCACACACAGGTGCTCCATCCTGGCTAACGACACGGTAAAGTGTGACGTAGGACTGTACAAATCACTGCAGGCATGGAAAGATCATAAACTCCACATCGATCATGAGATCGAAACACTCCAGACGAAGATTAAGAAcctgagagaggtcagagggcACCTGAAGAGGGTGAGGCCTGGAGACTGTGACTGCAGCAAGTACATCTACAAGTCCAAGTTCAAGAGTAAGCTGAGGAAATATAAATCAGACAGCATGCATCCATTCAGgaaAGCGCAGGAGAAAGATAAGAAGGCATGGCTGATGATGGAGCAGAAGCGCAGGAAGAAGCTCAGGAAGATGTTGAAGCGCCTGCGTAACAATGACACATGCAGCATGCCGGGTCTCACCTGCTTCACACATGATAACCAGCACTGGCAGACTGCCCCCTTCTGGACCTTGGGACCTTTCTGTGCCTGCACCAGCGCCAACAACAACACGTACTGGTGCATGAGGACCATCAATGAGACGCATAACTTCCTGTTCTGCGAGTTTGCTACAGGCTTCCTGGAATACTTTGACCTTAACACAGATCCATACCAGttGATCAACGCAGTAAACACGTTGGATCGTCACATTCTGAACCAATTGCATGTTCAGCTCATGGAGCTGCGAGGCTGCAAGGGCCACAAACAGTGTAACCCCCGCATACGCAATATGGACCTGGGAGGCAAAGAGAGAAGCAGCTATGATGAATACAGAGGGCAGATTTGGGAAGGATGGGAAGGATAAGAACCAGGCGGGTAAGAGCCGATTTCAACCCCTGTACACACTCGATGAGCACGCCTACGATCTCGACCTCAACTTCACCTTGAGCCTGGAGGACTGGGCCCACTTCAGCCGCTCCGTGGACCACACGTACACGTTCCTTAGCAACCATAACCGGC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0009986 cell surface cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0008484 sulfuric ester hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301364 lncRNA downstream 118786 13700009 ~ 13700405 (-) True G254567
TU301398 lncRNA downstream 122571 13692797 ~ 13696620 (-) True G254600
TU301397 lncRNA downstream 153718 13664893 ~ 13665473 (-) True G254599
TU301384 lncRNA downstream 204528 13614428 ~ 13614663 (-) True G254587
TU301365 lncRNA downstream 228221 13590500 ~ 13590970 (-) True G254568
TU301888 lncRNA upstream 583256 14530825 ~ 14532588 (-) True G255020
TU301946 lncRNA upstream 752655 14700224 ~ 14704270 (-) False G255071
TU301947 lncRNA upstream 752655 14700224 ~ 14704270 (-) True G255071
TU302215 lncRNA upstream 928075 14875644 ~ 14878506 (-) True G255306
TU302322 lncRNA upstream 1232817 15180386 ~ 15180640 (-) True G255403
XM_034311708.1 mRNA downstream 5836 13733088 ~ 13813355 (-) True si:ch211-218g4.2
XM_034311709.1 mRNA downstream 5840 13733088 ~ 13813351 (-) False si:ch211-218g4.2
XM_034311711.1 mRNA downstream 53581 13733088 ~ 13765610 (-) False si:ch211-218g4.2
XM_034311710.1 mRNA downstream 65016 13733088 ~ 13754175 (-) False si:ch211-218g4.2
XM_026921354.2 mRNA downstream 97461 13700436 ~ 13721730 (-) False phf20b
XM_026920723.2 mRNA upstream 88231 14035800 ~ 14042467 (-) True eef1a2
XM_026920724.2 mRNA upstream 95003 14042572 ~ 14048229 (-) True mrgbp
XM_026921080.2 mRNA upstream 102875 14050444 ~ 14054172 (-) False sac3d1
XM_026921081.2 mRNA upstream 102875 14050444 ~ 14053773 (-) True sac3d1
XM_026921076.2 mRNA upstream 107833 14055402 ~ 14060447 (-) True haus8
TU300417 other downstream 1659831 12158772 ~ 12159360 (-) False ptk6b
trnae-cuc_33 other downstream 1678018 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 1926189 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 1926771 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 2250661 11556887 ~ 11568530 (-) False avpr2ab
XR_004579685.1 other upstream 181647 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 181647 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 181647 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 181647 14129216 ~ 14146831 (-) False LOC113530423
TU301948 other upstream 751703 14699272 ~ 14704270 (-) False G255071

Expression Profile