RNA id: XM_026920639.2


Basic Information

Item Value
RNA id XM_026920639.2
length 3728
RNA type mRNA
GC content 0.45
exon number 15
gene id calcoco1a
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20274622 ~ 20287213 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAACTATGCAAAAACCCCCGtgcctttgttttttgtttttgttgttaaagGTTTAAGGCAGAGCTCCTGACGAGTAACTTTGACCAAATGACTAATGAGACAGAAGTTTGAGTTAATCTCACGCTTGTCTTTTGAAAGAAAACAGCACTGAGCAGCTGAACTCGGaatcacattttttttctgaccatGGAGAAAGCATGGAAGGTGGAGTTTCAGAACGTGGGCAACAGCTATTTCCCACAGAGCCGAGTGGAATGCCACTACAGCATCAGCTCTCAGCACAGCTGGGCTAGCAGTGACTGGATCGGCCTGTTTAAGGTTGGCTGGTTATCTGTGAGGAACTACCATACATTTGTGTGGGCTCTTGCTCCAACCAACTACAAGGAAGGGACTGATGTTAACTGCTGCGTCCACTTCCAAGCTTGCTATTTGCCAGGCCCCAGTGGTGAGCAGTATCAGTTCGTATATGTGGATGGGAAGGGCGAAGTGTGCTCCCGCAGCTCTGCTTTCACTTTCTCTGCTCCAAAGCCACTGGAGGAGTTAGTGACTCTGGAGCAAGCCCTGGAGGGAGGTGAAGGCAGCGAGGACATGCTAGTTGTCGTTCCCAAAGCTGAGCTTCTGCAGaGCCGGCTACAGGAGTGTCTGAAAGAGAGGGCTGAGTTATTGCAGGCTCTAGAAACAGCAGAGAGGAGCCGTGAACATGAGCGCGAGTGCTCACATAGGACCAGAGAGGCGTGGGAGCAGAGGAGcaaggagctggaggaggagctCAGGCACACCAGGGAACAAATGGAggacatgaagaagaagcagGAGGAGATGGCAGCTCTCAGGGAGGTTCTGCAGGAGGAGAAGCAGGCCCTGCTAGTTAAAGAAGCTGCCAGTGAGCAGAGGATCAGCCAGCTGGAGGATGACATCAGGGTGCTCACCCAAAAAGccctggagagagagacagatctaGAGAGGATGAAGGAGCGAGCCAAAAAAGCTGCGGCCCAAAAGAAAGAAGTAGAAGGTGAACACAAGAATATTAAGCTGAAGTTGGAGCAGACTGAAAAAGAGCTGCATAGCCTCTCTACAGAGTTCCAGAGTTTGAGAAGTTCTCTGGCCCAGAGAGACACGCATGCCCTGCAGCTCCGAGATACCatcaccacactcacacacaaactcaacAACGCACATAGGAAGGAGGCAGCCAATGAAGCGGCTTTAGCTGAGTTACACGGTGTTCAGGAGCGACTGAGTGCCAGTGAAGGCTGTGTTGAGACTCTGCGGACTGAGATCAGAGACATGGCGGCTCAGAGGGACAACATCCAGGCCGACCTTCACCAGGCCAGACTACAGACCGCACAGCTCACCCTGCAGCTTGCAGATGCCAACCTGGCACTGCGGGAGGCTCGTGCCAGCTGggtgcaggagagagagagtctgcaGTGTAGCACTGAGATGATTAGGACACATTTGGACAGGCTGAATGATGAGATCAAGCAGAAGGAAGAGCAGCTGCAGgaggagaggatggagagaaaCAAAGCAGAGGTGGAGCTTGGGCGAGAGAAAGACTGCAACCGGGTGCAGCTGAGTGAAACACGAAGGGAGCTGCAGGAACTGAAAGCCAGTCTCAGGGTGGCTCAGAAGGAAAAGGAGCAACTGCAGGCTGAGAAAAAGgaggtgaTTGAGTACATCCACCAGCTGGAGCAGAGGCTGGAGACCCTGAGTGGCTCTAAATGGAGCATGACCGCGTTGTTGCAGAGCGGTCAAGCAGACAGCTCCCTCTCAGAGTCGGAGGATGAGAATCCAGAGGCACTAAGGCCTCTGAGTCATTACAGCTTGTGTGACCAACCCCAGGCTGACCTCCTCATTCTGCCCACTACTCCTCCTCCGTCCCCGCGACTCCTCCACTCGTCTCAGGCTGTGGTGATCAGTCAGCCCGCTCCACTCTGCTCCCCACATCAGCCTAGTGAtgatacacacccacacatgcacaGCTCCGAGTCGGAGGAGGAATATGAAGTGTTTCAATCAGGTGGGAATAGCTTTGGAGAAGAGATGGCTCTCCTGCTGCCTAACCACAGAAACGCTATTCTCAgTGATGTGGAAGAGAGCCCCCTGTGGTGAGGAGTGGAACTACAAGATCAACCTGTTACAGGTCTTTGCACAGCAACACATACTGACATATGCAATTTGCTTTACATTCTTAATGCACTTTCTGTATGCACAAGCTACTAGACTAATCAGTCATTCACACATTTACCTGTTCAaatttaacacttaacactaaGGATGCATCAATACAGATAATGATAACTGTATCTCGTTTACTCATACTCGTAAGAAATGGTCCAATACCAGCATCTGATACCATGTGATAGTATGTGACATAAGCCATGACATGAAATGAGAACAATATGTAACATATGATCTGTGTTATGATCAAAGAAAAGCAAACCGTGTTCTGTGAAATTATCAGAAGGAGGAATAACtttatggtgtttaaacagtatctttaataacGAGTGCTAAGGTCACCAACCTGAGCTTGCAGACCAGTATCAGTGAgagtggtcattaaaaatgcacGCAAGGTCCAGTGAACTGTGTGCATACAAAAGAACTGGTGAGCATGAAGCAGTGAACCAAGCATGCAGAGAAGCTGGCCTGTGTGAGCACTTTAGTACCGCGAGCACTGAGCGCTTTCACTTCCTGCACTTTGCTCACGAGTCAAGGTGCAATTCATGGTGCTTTGCGCTCATTTTTAACGACAACACTTGCTGAAAATGCTCTGCATgcgctcatttttaatgacaacACTCGCTGATAATGCTCTGCACGCTCATTTCGGCCACACTTATGCTCTCTATTAACCGTTTAAACAccataatttattaaacatgaactCAGTACaaggagttcattgctagctGCAACCAACATAAACGATTATAAGCTGAATAAAATCTTCCATAACGCCCCTGATTGATGAGTCACTTCCATATCGGTATCAACATATAtcaaaaaacatgtactcagtctgaaaaatattattttttaagaagtTGTTTAATTCAAAATGGTTTGGTATGTCAGAAAGATagtgtgtctttgtgtattTAGGTGTGTATGGCTAGTTTTGAATTATGATGAATAGCTTTTTACTCAAAAAAGTCTATAATTAAGCGTATAtcagtttttatgtttataagAGTTAGAACTTGCAATAATGTATGTAAAACACATTTGAATCCATGTTTGAGAGGATAGgattttgttttactttaagGCTATTATGTCTAATATTTTTGGAGTGTTGGTAAATATGTTAACTGCAGCCTATCAAGGATATCACGAATTATGTGTCAGAAAGGAAATGACATGTGAATGTGTAATAAAGAAACTGAATTTAAAGCAGTTGAGGTCAAACATGAAATGATCATGGAAGTGTTTGCACAGATATGAGCAGTCCTGATTGCAATAATGATACaagtaataatcataattaGCTAACTTTTATTAATGCAAATACTTTGTGATCTCTGTCTCTGCAACAAATTATGATATAAATGTTTTCTACCatttaaagttttgttttgCTCATTTAACTAGGTGAtgtttcactgtctctcttttaaGGCATGGGTTCTCAAAATTTTGCAGCCAGGTACCTGtttaattgggaaaaaaaaaacaaaaaaaaaaaacacggacCCCCCTCTCTCAGTACCAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305460 lncRNA downstream 130373 20144025 ~ 20144249 (-) True G258003
TU305425 lncRNA downstream 145510 20128905 ~ 20129112 (-) True G257980
XR_003403186.2 lncRNA downstream 216716 20051421 ~ 20057906 (-) True LOC113530857
TU305265 lncRNA downstream 659943 19611920 ~ 19614679 (-) True G257880
TU305254 lncRNA downstream 683492 19586328 ~ 19591130 (-) True G257870
XR_003403139.2 lncRNA upstream 27150 20314362 ~ 20331611 (-) True LOC113530344
TU305690 lncRNA upstream 76843 20364055 ~ 20373180 (-) True LOC117599243
XR_004579708.1 lncRNA upstream 82237 20369449 ~ 20371300 (-) False LOC117599243
XR_004579709.1 lncRNA upstream 82237 20369449 ~ 20371300 (-) False LOC117599243
TU305692 lncRNA upstream 89126 20376338 ~ 20402260 (-) True G258198
XM_026920084.2 mRNA downstream 52509 20205272 ~ 20222113 (-) True nr1d4a
XM_026921228.2 mRNA downstream 72877 20198866 ~ 20201745 (-) True mfsd5
XM_026921329.2 mRNA downstream 94932 20155949 ~ 20179690 (-) False jph2
XM_026920991.2 mRNA upstream 212066 20499278 ~ 20509708 (-) False cbx5
XM_026920990.2 mRNA upstream 212066 20499278 ~ 20509706 (-) True cbx5
XM_034312053.1 mRNA upstream 212066 20499278 ~ 20508696 (-) False cbx5
XM_026920986.2 mRNA upstream 232133 20519345 ~ 20525464 (-) False nfe2
XM_034312052.1 mRNA upstream 232133 20519345 ~ 20525464 (-) True nfe2
TU305550 other downstream 2715 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 154673 20110463 ~ 20119949 (-) False mlh3
XR_003403201.2 other downstream 165412 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other downstream 170711 20103774 ~ 20103911 (-) True LOC113530994
TU305224 other downstream 653062 19615527 ~ 19621560 (-) False magi3a
TU305957 other upstream 543616 20830828 ~ 20867958 (-) False LOC117599256
TU306159 other upstream 881774 21168986 ~ 21169698 (-) True G258580
trnaq-uug_7 other upstream 1067414 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579748.1 other upstream 1641963 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 2158818 22446030 ~ 22449427 (-) True G259306

Expression Profile