RNA id: XM_026920643.2


Basic Information

Item Value
RNA id XM_026920643.2
length 5698
RNA type mRNA
GC content 0.50
exon number 42
gene id LOC113530527
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10570109 ~ 10619665 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgagagagagagattgagtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagtgtgtgtgtgtactcatcTTTCCACGTGTGGAATGCGCACACAGGACAGCGGACAGAGGCGCGTCGCTTCAGGTCCCACAGTGCTCCGGTGTTCTTTTGGTCTTCTCTCACGTCTTCCTGTCTATCCATGTCCAATGTCGGTCCTTGTTGGGATAATTCTTCTAATACTGGCCTCTGAGGTTTCTACTCAAGGCCGATTAAAGCTGACGGTTTTGTCAGAGGACCGGCTCCAGATGAAATGGAAGGAGGCTGAGGGGCCAGTGCAAGGCTACAAAGTCAGAGTTAGACCAATCTCAGACGTTCCTCAGCCGGAGCTGATGTTGACCACAACACGTGGTCGGGCCACTGTGGCAGGCCTCGACTCCACACAGGAGTACCTGCTACAAGTGCTGGTGCTTAATGGAACTGTGGAGAAACTCATTGCTAAAAGACGCTTCACAAttgaTGTGCTgcgggaggaggaggaggcccGCAGTGGAAACCCAAAGCACAAGAGGAAGGTCCAGGCGGTGGGCTCAGGCTCTGGCGAGATGGACGATGCCACTGAGGTTCTGGAGTCACTGCCCACTGTTCTCTACCAGGAGCCAACTacaagagAACCTCCTACTATTGCTGATCAAGAGGAACAAGAGGTCGAAAAGGGcaaagataagaaaaaaaagaagaaagacaaaaacCGTACAAAGACAAAGGATGAGAAGGTTGAAAGCAGAGGTAAACCTGCAGAGGAGGAGCACAAAGTGAGAAAAACCACCCCAGTTACAGCTGGATCCTCTCACAAGCCATTCGAGTGCAGGACCGGGGTGCAGGCTGATCTCGTCCTGCTGGTAGATGGCTCCTGGAGTATTGGACGTACTAACTTCAAGAAGGTGCGGGAGTTCCTGGAGGGCCTGGTCACTCCCTTCCACATCGGCCCATATGGAGTGCAAATTGCCCTGTCCCAGTACAGTGGAGACCCTCGCACTGAGTGGCAGCTTAATAACTTCACATCCAAAGAGCAGCTCCTTGACGCTGTCCGAAACTTCAGATACAAGGGAGGGAACACCTTCACAGGTCAGGCTCTTATTCATGTCCTAGAGGAGAATTTGAAGGAAGAGGTCGGGGCCAGGTCAGATACCCCACAATTTCTGCTGCTATTGACTGATGGTAAATCTCAGGATGATGCCGTTGCTGCAGCCAGTAGGCTGAAGAATGCAGGAGTGGAGATCATCGCTGTAGGCGTAAAGAATGCAGATGAGGCCGAGCTGAAACAGGTAGCATCTGAGCCTCTGGAGCTGAATGTGTACAATGTGAACGATTTCCCTCTACTCACTAAACTGGTTGGCCGACTGGTACGCATCCTGTGTGGGAAAATGGAGGAGCGCAGTAAAACAAGACGTGCGCATCCCACTGAAGACCCAGGGCTGTCTTACCCAAGTCCCACAGACTTGAGATACTCTGAGCTTGGTCCCAAAGAGGTGCGTTTGAGCTGGACGAATCCAGGCAGAGCGGTGCAGCAGTACAGGGTGGTGTTCCACAGCAGTGAGGGACAGAGCCCACAGGAGGTGGTGGTGAAGGGGTCAAACTCCACAGTGATGCTGACCGGACTGTCCTCACAGACACAGTACCATGTGTCAGTTTTTCCTGTATATGAGGACAATGTGGGCTCTCCGTTGAGAGGCATCTTCACTACATCAATGCTGGCCATGCCTGAGTCTCTGGAGGTCACTGCGTCCTCTCCCAGCAGTCTCCGGGTGCGCTGGAGGCCTGCTCATGGAGCTACTCAGTACATGGCCCTCTACTCAGCTCTCAATGATGGAGAGCCTGATGATGCTCGAGAGGTGAAGTTTAGAGCTGATGAGACTGATGTAGAGCTGCGAGATCTGATGCCTTCTACAGACTACTCTGTCACTGTGTACGCTTTGTACGAAGATGAGCCAAGTGATCCCGTCACCGCTATCGCTACcacatttcCACTACCATCTCCTCTTAGTCTGCAGTTCCCAATGGTCAGTCACAGCACTCTTAAGGTCACATGGGTGCCTGGGGCAGTTGATGTTCCTGCCCATCGTGTCACCTACAGCACAAATCATGGGAGTGATGTCAAACAGgtggAGGTGGCAGGTGTGAACACAGTCCTACTGCAGAATCTTTCCTCTCTGTCCAAGTATCTGGTGTCTGTGCAGTCCTTCTATGTAAAAGGACTGTCTAGTCCTCTCACTGGTAACATCACTACATTAAGGGTGCCTGCTCCATCTGAGCTTCGGGTCACTAACTACTCTGAGAACACTCTAACAGTACGCTGGGAGCCGGCTGCGGATGATGTGACCTCCTACCTGATTAAATGGATCTCTCTGAGTGGAGGAGACCTGAGACAGCTGAAAGTGGATGGGGAGAGTGAAGGAGCCACACTGGAGGGTGTTGAGGATGATAAAGAGTATCAGATCTCACTGTCTGCCCTCTACGCTGATGGAGCACAAAGTGAGGCTGTGGCTATAAGATACAGTACCTTGTATGGGGGAGGTCCCACGAGTGTGTCCATCTCTGAAGAGACTGCAGTCAGTATGCTGGTCAGCTGGGTTCCTCCTAATGCTCATGTGCTGCAGTACCACGTGTCCTACACTCCTTTAACCGGAGACGCACGGGAGAACAAAGTGTTGTTGCCAGGCAGTGAAAGACGAGTGCTTCTGCAGTCTCTTCTCCCTGACACTCGGTACAGCGTGCTGGTTACTGCTGAATACCGCAACAGAGAGGGAGGCAGTGCCTCAGCACAGGGCAAAACCACTAGTCTACGTGTGAGCAGTGTGAGCGTGGTTCGGTCTGATCACTCAAGTATCTGTGTGTCCTGGAGGCCAGTAGCAGCAGTCACTGCTTACCACATAGTCATCCAGGCTCTCAGAGATAAGCAGAAAAAGGAGGAAACAGTAGAATCTACCAGCAGCAGTCACTGTTTCTATGAGCTACAGCCAGAGACGGTGTATCGGATAAGCGTGCACTCCCGCCTGGAAACAGTAGAGAGCACTGCTGTCACTATTCTCCATCCCACAGCTGCGGCACCATTAAGAGCACAAGTTCCTCCAAGACTACATCCCATACAAAAAGAAATGTGTCCTGAGATGACTATCAGGAATAGTGTGATTAAAGGCTTTAACATGATGGAGGCATTTGGTCTGACTCAGAGAGCCCACTCCACTGTGGAGGGTGTTTCAGTGGAGCCTTTTATCTTCAGCACTATTCCCAGCTACACCCTCTACAGAGACGTTCAGCTGACCCAAAGCACAGGCTTTATCCATCCAGCAGGCTTTTCTCCAGAGCACACTATCAGCGTGGCCTTCCGTCTGCTGCAGGACTCGCCCAAGGAGCCCTTTGCTCTCTGGCAGCTCACTGACAACGATTTCCAGCCCAAAATGGGGGTGGTGCTGGACCctGAAAGGAAAGTGTTGCTCTACTTCAGTCTGGACTACAGGGGAGAGGTTCAGGAGCTTACTTTTGACCAGCCACAAGTCCACACTCTCTTTTACGGCAGCTTTCACAAGATTCACCTGTCCATTAGTCAGGTGAGTGTATCCCTGTCAGTGGACTGCCAGAGGGTTGGTGAGAGACCTGCCCGTCCCCTAGGAAACATACCCACTGACGGCTTCGAGATGCTGGGCAAGCTAGTGAGGACTCGAGGGCCACGCAGTGGCTCTGCTGCTTTCCAGCTGCAGTCATTTGAGATCATATGTAACATCACCTGGGCCTTAGAGGACACATGCTGTGATCTGCCTGCTCACAGAGATGAGGAGAGCTGCCCAGCTCTTCCAAACACATGCACCTGCACTTCCAACATCCCAGGAGCCCCTGGGGATACAGGATTGCCTGGGAAACCTGGTCCTCGTGGGCAGAAGGGGGAAAAAGGAGAGGGAGGCCAAAAGGGTGAAATGGGGCCCCCTGGCAAAGCTGGACCAGAGGGCGGCTTAGGTCCTCAGGGGTCCTTGGGCCCTCGTGGTATAACAGTGATGGGAAAAATAGGGCCTCCAGGAATTCGGGGAGAGAAAGGTGAAATGGGTAGGCCTGGGAACCAGGGTTTGCCAGGACCACCTGGCCCAAAAGGAGAAGTCGGAAATCCAGGACCAAAGGGAACCAGAGGTGTAGAGGGTAATATAGGACCCCCAGGGACTACAGGGCCAAGGGGCTTCCAGGGTATACCAGGCCATCCAGGACCTGTCGGAGAAAGGGGGCTGCTAGGACCTGTAGGGCCCTCAggaCTTCCTGGGATTAaaggtgagagaggagagaagGGAGAGCCACAGTCTCTTGCCATCATCTACGACCTTGTCAGTCAGGCCTGTGAAAAGCTAGTGCACGACGAAGTGCTTAAGTTAGATGCCTTTCTAAATGAGATTCGTCGGAATCCTGTGCCCGTTGAGGAGCCTGTTGGACCTCCAGGCGAGCCTGGAATCCCAGGTGGTAAAGGACCCCCAGGACCCAGAGGTCCTCCGGGGCGACAAGGAAATAGAGGGGATCCAGGCAGACCAGGGTATCCTGGTGAGCAGGGACGCAGGGGTTTGCCTGGTGAGAAAGGAGAGCCAGGCTCTAATGTCCAGGGACCACCAGGAATAAAGGGTTTTTCAGGAACTCCAGGAGAAAGCAAGATGGGGACACAAGGCCCTCGAGGTGAAGATGGTAAACCAGGTATCCCTGGCATTCCCGGAGCTATAGGACAGCCAGGTGAGATTGGCCCCCCTGGTGTGTGCGACAGCAGCGGCTGCCATCGAGGCCCTTCACCTGCAGagGATCCATACTATGGATACCAGCCTTGATCCAAACATAAGGACTATCTAAGCAGTTACCACCAGAGAGCAACTTTCACCAAATATTATAGAGGCACTTCAGGATGTCATATTCAGATGGATCTCCATGCAAAGGACatgttttatcatatttataaacATGACTGGAACTTCCTCAATGCGTGAGCCTTCAGACTggctcttctttttttaaatgagatctTCATAATCTTTGATCGTCCTTTGTTCCATATACAGGCATTTTAcgcctgttttattttaatattttctcttctttctctaaTCTTCTGGACATAACCATTGCCATGGATCACAAGACAAAAATTCTTGAGCAGGACTCATTATGTGCTACAAGGCGGAGATGCCATTTGTGTCATATGGGGAATTTACTACAAAAATGCCAATTTCGCACTGAGAATGTTTTTGGCTGGTATTTTACCAATACTGtggtttattttgttgtatttatgcactacactgtgtgtgtttttttactgATATGTTGTTGAAGGCATATTAATACTATCACCTGTTTGCGTACTGATTTTAACTGCctcaaaataattttgtaaCTAAACGGAATTGTATGAAATAATCATGAAACAAGACTGTGATAAATTTGTGATGTCTTACTGATCTGCATAAGGCCTATTTTACTTGATAGTGTCTAAAATTCTTTTAGCACAGTTAACACTATGTATATTCGTTCTAATGCCATATTACTGTTTAAATAGTAATATTTCTATCTAAAATCTCtcctacagtgtgtgtgtatatttgtgtgtagaAATGAGCATAAGTAAATCACTGTCTATGAAACAaaactatattttaaataataaaaatatttctacta

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299029 lncRNA downstream 173369 10396395 ~ 10396740 (-) True G252610
XR_004579740.1 lncRNA downstream 281425 10244041 ~ 10288684 (-) False LOC117599279
TU299250 lncRNA upstream 50026 10655314 ~ 10655522 (-) True G252783
TU299304 lncRNA upstream 105107 10710395 ~ 10711491 (-) True G252833
TU299329 lncRNA upstream 173697 10778985 ~ 10779600 (-) True G252856
TU299332 lncRNA upstream 176847 10782135 ~ 10782588 (-) True G252859
TU299403 lncRNA upstream 260072 10865360 ~ 10865700 (-) True G252920
XM_026920247.2 mRNA downstream 1350 10562324 ~ 10568759 (-) True dpm1
XM_026920842.2 mRNA downstream 8638 10548390 ~ 10561471 (-) False adnpb
XM_026920843.2 mRNA downstream 8847 10548390 ~ 10561262 (-) True adnpb
XM_034311542.1 mRNA downstream 40392 10497718 ~ 10529717 (-) False camkvl
XM_026920647.2 mRNA upstream 3605 10608893 ~ 10619665 (-) False LOC113530527
XM_026920646.2 mRNA upstream 3605 10608893 ~ 10617505 (-) False LOC113530527
XM_026920645.2 mRNA upstream 3605 10608893 ~ 10617504 (-) False LOC113530527
XM_026920644.2 mRNA upstream 3605 10608893 ~ 10616859 (-) False LOC113530527
XM_026920104.2 mRNA upstream 15385 10620673 ~ 10623793 (-) True tnnc2
XR_003403171.2 other downstream 100575 10460694 ~ 10469534 (-) False usp21
TU298725 other downstream 540116 10029492 ~ 10029993 (-) True G252373
XR_003403155.2 other downstream 1991509 8566656 ~ 8578600 (-) False ttll10
TU296847 other downstream 3060362 7476274 ~ 7509747 (-) False ctnnbip1
TU296070 other downstream 4262346 6304844 ~ 6307763 (-) False rps26
TU299234 other upstream 31235 10636523 ~ 10638718 (-) False sinup
TU299470 other upstream 408676 11013964 ~ 11015630 (-) False LOC113530950
trnae-uuc_4 other upstream 653755 11259043 ~ 11259114 (-) True trnae-uuc_4
trnan-guu_24 other upstream 668042 11273330 ~ 11273403 (-) True trnan-guu_24
TU299993 other upstream 850733 11456021 ~ 11462706 (-) False LOC113530309

Expression Profile