RNA id: XM_034311767.1


Basic Information

Item Value
RNA id XM_034311767.1
length 3868
RNA type mRNA
GC content 0.39
exon number 7
gene id si:dkey-261h17.1
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17649314 ~ 17676304 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACCATGCTTTATCCTGCCAGTGTGTCCTGCGCAGAACATATTCAGTCACAGGAAACCCCTAAGCTCTCCTCCAGCACTCTAACAtacgctctctcacacactcacacactgcagcatgCTCACAAAGAGGATGGCCATGAGGAGAATGAATGAGATGTGCAGAAGGATGGCTCTAACTTTAGTCTTCTATGTTCTGCTGTTTCACATTTGCCAGGGACAGTCTGAGACTACAGAGGAAGTAACACATCAAACAAGTGCGATCGTAAAGCTTAATAGCACTCAGACGTTCTCTGGAGGAGCAACTGATCCAAGTATCACAAACTCCACAAACAGCCCAGCTACTGAGGTTAATCAAGTTACTGATCAACCTAACCCTTCAACCCAGGATATACTCACACTGTCAGCAGGATTGCAGAGAGACACAGCCGTCATCGATGAACATAATCGTGAAACCCTATCTACTCCTGAGACAACCACATCACAATCTGTGGTGCATGGACATGATGATCAAAGTCCACAAGGGgtaagcaacacgCACGTACCCAGCATTCCACATGatgaaaaaattaatcaatccagtccactttcttccattgctccacggTCCATTCCTGATGCTCAGgtaagcaacacgGACGTACCCAGCATTCCACATGATGAAAAAATTAATCACTCCAgtccactttcttccattgctccagagTTCATTCCTGATGCTCAGTCTGGACAACCGCATGTGTTTGTGCCCGTACTGGTGTGCGGGTTAATCCTTGCTGCTGCCCTGATCGGAGGATATGTAGTGAGGAACCGCTATTGCAGAAAGGCCAGTGGCATGAAACTAGCAGAGGAGTCATACATGACTGATGAAGATAACCAGGGCAACACTCTGGTGTCTGTTGCTCCTCTGAACCCACCTGAGAGCTCGGAGAAACCAAGCCAGAATGGCGAGTCCCTAGAAGCCGTGAAGATCCAAAATCCTCCTGCTGCCACCAATGGTCACTCTACCACCAAAGCTGACACTGAGCTGTGAGAGTCCGTCTCAACTACACAGGCTCTGGGTCAAAGTTCACCATCCCAGGCCTACAAACAACACAagggaactgaaaaaaaaaatactctctTTATCTCAATACAATTAGTACATAATGAGGGTTATTGATagttattataatgtaatttgGAAATGGctcttgatgatgatgatgaccagTTGGGTGGGTTTCCCAAAACGTTTGTAATGCTAAGTACATCGTTATCTCGTTCATAagaatgttctttaattaacaagCCTTTACCGAAACTCTTTACTAATGTAGTGCGTCAACTTGTTTGTAAATTAATGAGTAACCTGACCTATTCGTTTTTCATGAAATACTTGGTTATTTGGAGCCTGCATGCAGTTCTACCTCAAAAAGGCAGAGGCCACtcatttttatgcaaaaaaGCCTCACAGTTGTATGGAGTGACTGTGATCTATTGCCCTGGTGTTAACTTGCTTAATTAGCATCTGTGAGTGTTCAGAGTGTAGTAGATTCAAACCACAGCTTCGttcactgtctgtgtggggttacACGTTGTTCTTTATTAATCATGTTAGCTAtacaaaactgcatttaaaactgtGTTCATGTAAATCTATTCACATGGAACCAACAAGCGGAAGAAATGAATTTATGTTGAAGTAacatattttgtttgtgtagaATCAATGTACAATTCAATTAACTTTCAAGCAAATTCAATGAACTTTTTTAATGTAGCTTTTGTACTACCTTTGTCGTTGCTGTTGTtgtgtacactgaaaaaaaatcactgaaatttACTTGATTCAAATGTGTATTGGTTCCATGTGAATGAATTGATTTGCATTAACACAGGACTCGGGAGCTGAGAGGCAGTGACGCTACCCACTAGACTACTATACTGCATTTGGTAACAGCTCACACTCATTCCACATAAGTCAAGCTGAAAGATTAGATTAAACCTAGCATAAGCAATAACTGTGTGATGAGTAACTGAACATCTCTAAACAGCTGCACTGATGAAAGAAAATTCAGAAAATTTAAGCATAATAACAAAAGATTTCACAAATAAAACTacagaataaaaacagttctacAGAATATAATCATAACCAGCAAACAGCACAAGTAAGTAAACAGTATACACTACACAGAGAGGGTAGatatcccagaatgcactgccaTGAATAATGAAGTGCTAAAAGCCAATCAGGCACTTCCAGGACCACAATATGTAAACTGTACATTTAATGTAAACgttatattttctcttaaatctgacaatatattgcattttttcagCGTTGCCCTTCCAGACAAACGTAATTTCTGTTGTAAATGGTTATTTACAAACATCAACATCTGTTTATGCCGTGTAAAGTCACTGATTCATCTAAAAAATTTACCTCCAGACTGTGAATCGAATGTTTGACTATTGACTCGTGCGGTGTGCAGACTCGACTCGGAGTGGGCGGAGCCAACAAAGAACTACTTACAACTCAATCTTTAAATCTCTCATAACGAAAGCTCCCAGGAAATACTCACTAAATAAGCTCATACTTAACATATGTCTTTCTTAAAGTTGTTTGTTATTCGCTAAGATTCATCGTTGTTGGGAAACCCACCCCAGGTTCTTATCTTTTTATCTGGTTATATCCTTTACCCTTCCCACACACAATCAAACCTTTTATGAATATCTAGTTGTTAACttctacataaaaaattaagttaaaaataaagtttggttGTTTGGGTGATgataaaaaaacagcagttaaaatattacataatgttGTTATATgatatagtattatataatgCTAGTCTATTATAATGTGAAGAGTGCAAGTGCTGTGGCTCTCTGAGCTGATGTTGAATAATGGTCTTGGGTGGGTGTCCTTCAATAAGATTGATTGCTGGCTTCCATAAGTGTATACAGACTTGGACAGAGTTAGTCCCTGTTCGTGTCCCAATGTTCCACAGTTTCCTAACCCTCCACATGGCTCTCTGTTCAAGAGCACACTTCTTCTTGGGTCATCCAATGAAGAAATGATCAAATTGAATCACATGGGAGTTCTGTttgcttgttctttttttatgcaCATGTGTGAATTGTATTTCTAAAGTTTCAGATGCCATGTGTGAATTATAAATATGAGTGATGCCATATTTCATTGGGTTGATATAAGAATGTGTACCTATGTTAACAGTACTGCTCAACctttgtttattaaacaatgtgACAATGTGATGACTTGGAGAGTTAAGGTGATTGCACAGCATTTGTTTGGTGCTGGACTTCATTCGCTAACAATTACCATGAACTCCTTTTCATCACTGCAAACCACAGCTCACACCGGACTTCAAAATCCTGTAAAACAACCAGGGCTTATAGGTGATTGATGAAGATGACCTTTTCAATGGACCAAGACACATTTTGGAATTGTATATTTGTCCTAAACCAGTATTATGCTCTTTTGTAATATCTCTGGAATGTCATAGTTGTAGTGGGCTATCCTGAAATCTGtccttcttcttttattttaatgcaattatTGATTGTTAATTGCCAATCAGCCAAAGGCAAACAATGAACAGAGCAGAGTCCCGCAGTTGGCTTAATGAGTACGTGGACTCCCATTGCAATAGGCGTAATGCTATCAATTGTTATAGCATGGCAGCCATGACTAGTAGTGTtctgttcttttatttaattcatccTCCGTCTATATTTAACATTCCACTGTTCTGGGTCTGTGGTCTGTGTACTACAATTCTTATAAACTGAAGAACTTGTTTTGGTGTAAGTTTGGAATATGAATAAAGTTTTGGAAACTAAATTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303531 lncRNA upstream 213541 17433566 ~ 17435773 (+) True G256466
TU303523 lncRNA upstream 244944 17404139 ~ 17404370 (+) True G256459
TU303512 lncRNA upstream 320724 17328385 ~ 17328590 (+) True G256448
TU303486 lncRNA upstream 366814 17281320 ~ 17282500 (+) True G256426
XR_004579653.1 lncRNA downstream 26783 17703087 ~ 17729023 (+) True LOC117599208
XR_004579654.1 lncRNA downstream 26783 17703087 ~ 17729023 (+) False LOC117599208
XR_004579655.1 lncRNA downstream 26783 17703087 ~ 17708195 (+) False LOC117599208
TU303666 lncRNA downstream 51267 17727571 ~ 17729053 (+) False LOC117599208
TU303711 lncRNA downstream 70850 17747154 ~ 17747710 (+) True G256627
XM_026920718.2 mRNA upstream 22256 17427302 ~ 17627058 (+) True plxna2
XM_034311900.1 mRNA upstream 22256 17443016 ~ 17627058 (+) False plxna2
XM_026920352.2 mRNA upstream 455068 17189879 ~ 17194246 (+) True hrct1
XM_026920301.2 mRNA upstream 460937 17175707 ~ 17188377 (+) True LOC113530386
XM_034312245.1 mRNA upstream 460937 17177848 ~ 17188377 (+) False LOC113530386
XM_026920242.2 mRNA downstream 62967 17739271 ~ 17746529 (+) True si:ch211-66i15.4
XM_034312049.1 mRNA downstream 62967 17739271 ~ 17746529 (+) False si:ch211-66i15.4
XM_034312065.1 mRNA downstream 516893 18193197 ~ 18240912 (+) True LOC113530861
XM_026921224.2 mRNA downstream 550559 18226863 ~ 18240912 (+) False LOC113530861
XM_034312066.1 mRNA downstream 552773 18229077 ~ 18240912 (+) False LOC113530861
XR_004579712.1 other upstream 528373 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 1140934 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 1253102 16373242 ~ 16396212 (+) False LOC113530371
XR_003403143.2 other upstream 1254314 16363549 ~ 16395000 (+) False LOC113530371
XR_004579698.1 other upstream 1419908 16210650 ~ 16229406 (+) False LOC113530889
TU304341 other downstream 1203264 18879568 ~ 18911714 (+) False fmnl3
trnae-cuc_34 other downstream 1356613 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304946 other downstream 1801998 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 2714505 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 2833940 20510244 ~ 20514195 (+) False LOC113530729

Expression Profile