RNA id: TCONS_00007987


Basic Information

Item Value
RNA id TCONS_00007987
length 204
RNA type mRNA
GC content 0.52
exon number 2
gene id XLOC_004176
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 27828212 ~ 27917730 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCAGCCAGCGCGGCCTACCCTTCCGACTAACAACCCCTCCATTCGGCCGGGCTCACAGACCCCCACGGCGACAGTTTATCCACCAAACCAACCCATCATGATGACCATGACGCCCATGCCATTTGCTACCCAGACACACCAATATTACATTCCCCAGgataatacatttccatgcacacaaacacacactctttgtcGGTAA

Function

GO:

id name namespace
GO:0016281 eukaryotic translation initiation factor 4F complex cellular_component
GO:0000339 RNA cap binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120810-2 Predicted to enable mRNA binding activity and translation initiation factor activity. Predicted to act upstream of or within translational initiation. Predicted to be part of eukaryotic translation initiation factor 4F complex. Orthologous to human EIF4G3 (eukaryotic translation initiation factor 4 gamma 3).

Ensembl:

ensembl_id ENSDART00000180579

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007985 lncRNA downstream 42408 27829230 ~ 27830335 (-) False XLOC_004176
TCONS_00008474 lncRNA downstream 63028 27800859 ~ 27809715 (-) True XLOC_004174
TCONS_00007976 lncRNA downstream 65976 27783758 ~ 27806767 (-) True XLOC_004173
TCONS_00008473 lncRNA downstream 166143 27705970 ~ 27706600 (-) False XLOC_004171
TCONS_00008801 lncRNA downstream 247288 27592643 ~ 27625455 (-) True XLOC_004169
TCONS_00007993 lncRNA upstream 204527 28078643 ~ 28079691 (-) False XLOC_004178
TCONS_00007994 lncRNA upstream 204527 28078643 ~ 28079704 (-) True XLOC_004178
TCONS_00008802 lncRNA upstream 253141 28127257 ~ 28390101 (-) False XLOC_004179
TCONS_00008803 lncRNA upstream 322841 28196957 ~ 28200504 (-) True XLOC_004180
TCONS_00008804 lncRNA upstream 544760 28418876 ~ 28424141 (-) True XLOC_004181
TCONS_00007983 mRNA downstream 5632 27828212 ~ 27867111 (-) False XLOC_004176
TCONS_00007982 mRNA downstream 5719 27828212 ~ 27867024 (-) False XLOC_004176
TCONS_00007986 mRNA downstream 34122 27834614 ~ 27838621 (-) False XLOC_004176
TCONS_00007977 mRNA downstream 45210 27817301 ~ 27827533 (-) False XLOC_004175
TCONS_00007979 mRNA downstream 45215 27820599 ~ 27827528 (-) False XLOC_004175
TCONS_00007988 mRNA upstream 45586 27919702 ~ 28050559 (-) False XLOC_004177
TCONS_00007989 mRNA upstream 46472 27920588 ~ 27953135 (-) False XLOC_004177
TCONS_00007990 mRNA upstream 65766 27939882 ~ 27962757 (-) True XLOC_004177
TCONS_00007991 mRNA upstream 178583 28052699 ~ 28086915 (-) False XLOC_004178
TCONS_00007995 mRNA upstream 253083 28127199 ~ 28148033 (-) False XLOC_004179
TCONS_00007974 other downstream 153474 27713464 ~ 27719269 (-) True XLOC_004171
TCONS_00007964 other downstream 369423 27503232 ~ 27503320 (-) True XLOC_004167
TCONS_00007963 other downstream 369611 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00007960 other downstream 1124314 26748292 ~ 26748429 (-) True XLOC_004165
TCONS_00007954 other downstream 1295534 26569531 ~ 26577209 (-) True XLOC_004161
TCONS_00007992 other upstream 204032 28078148 ~ 28086924 (-) False XLOC_004178
TCONS_00008006 other upstream 716772 28590888 ~ 28595428 (-) True XLOC_004184
TCONS_00008022 other upstream 1778574 29652690 ~ 29657852 (-) False XLOC_004191
TCONS_00008030 other upstream 1935581 29809697 ~ 29816202 (-) False XLOC_004195
TCONS_00008033 other upstream 2022256 29896372 ~ 29909625 (-) False XLOC_004196

Expression Profile

//