RNA id: XM_026920687.2


Basic Information

Item Value
RNA id XM_026920687.2
length 9542
RNA type mRNA
GC content 0.48
exon number 26
gene id LOC113530551
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23584779 ~ 23604485 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTCTTCACTTTTCTGCAAACTAACTACCCTGCATGTTATATCTGCTGTTATTCTGATCTTTCTGAGTTTACCTTTAGTGGACACCACATATTGGGACTCGGTCTATCACTACCAGCAAAGGCCAGTGCCTGACCCTGGATCTATTATCAAAGCTAATAATGAGGTTGTAGTACTGAGTGGGCACTCAGTGTCTTTGGACCCTTTCAACCACCTTCTTATTAAGGTTCAGCCTGGAGATCGGTGCTATTTAACAGTTCTGGGCCAAGAACCACTGGCACAGAAATTTGGGATGGTCTCACCTAAAAAATTCCCTTGTTCTTTCAAAAAAGGAGATGTTGAATATGTGCATTTTGGCTCTCAGAGTGGTGGAATGGATTGCGTGAAACTCCAGCTGAGATATGACACGAAAACAGATACCATCGTCCTTCCTCTCACCTTACGAGTTGCAGTGGCCCCGAATGCACAACGGCTTGTGACATTAAACCAACCCTTAGTAGTAGATAAACAGAATGGCTACAGTAATCCCATCAATTCCCAAGGACTTGCGATTACATTCAGTGACTCAAGATGTGTCCTGACACCCCTTATTGGTAAGGGTGGTTATCCCAGGTATGGATCACTTATGAATTACTTTCCTAACTCACAACCAGTAGACTGTAATGTATTTCTTAACCTTGGTGTGCGCTACAAACTTAAGCCTGTTACAGGATCACCCAAAGTAGATTTTGTACCTTTTGTGGTAGAGAGATGGGATAATCAGGACAGGAAGCTACAGCAGGAGCACTTCCAGTTCAAAGTCATCATAGATGGTACAGCAGTAAATAGCCCTCCTAAACCAAGTTTCATCTCACTGATGATGATGGAAGTAAGTCAGTTTGTGATGACAGCAATTACTGCTGATATGCTAGCAGCTGAGGATCTAGAATCTGATCTGGATGACCTGGTATTCAAAGTGATCTCTCCTCCAGAGCAAGGTATTATCATTAGCACTGATAATCCAAATCAACCCATTAGTGCTTTTTACCAGAGAGACCTTCGGGATCTGAAAATTGCTTTCAAGCCTCCAGGAGAGGACTCTGATTCTGAGAGGATTCTACACACTGAGTTTGAGGTTGTTGATCAAGAAGGTTCTACGTCAGATCCCTTCTCTTTTATGATTGTGGTAAAGCCCATGAATACACTGGCTCCAGTTGTTACCTTGAATGCTGGTCAGTTTCTTTTTGAGGGCCAGTCCAGACCACTCTCCAGCAAACTAAACCGCATCAGTGATGAAGACAACCTTGCAGATGTCAGGATATCTGTCGTCCATGGGTTGCGTCATGGAACTCTAACAGTTCTTGGATCGCAGAGGAAATTTTTCACACCAGATGACTTGGAGACTAGTGTGGTCATGTATGAGCATGATGGCACTGAGACTTTCAGTGACAACATTGTTTTCCGGATGACGGATGGGAAAAATGAGGTAGAGTTCTTGTTTCCGGTTACTATAATCCCACAAGATGATGAGCCACCTGTTGTTAATGTGAACACAGGGTTGGTTATGGTGAAGGGAGAGACTAAACAGATTTTGCCAGCTGTATTAAGTGCAACAGATGTAGACTCTGAAAACAGGCAACTGAAATTCATTCTAGTTTATCCGTATTCCTCAGTGGGGCAAGTGCTTCTCAGACAACCTCAGACCCCTGAAGACATTTCTTTATGGAGATATAGTGACTCTAACCATGTGTTTGAACGAGTGACTGTGGAGTGGTATTTCAGCGACATCTTAGAAGGAAAGCTATACTATCGCTATATTGGCCCCCCATTAACATCCACAATTACAGACCACTTTAGCTTCCGAGTTGAAGATGACAACAACCCTCCAAACCAATCAGGAGAGCACATCTTCTACATCAAGATTCATCCAATTGATGATCTGGCTCCAGAACAGTTTCCTGGAACCACGTTATGGGTCCCAGTTCGGGAATACGAACTGACTATCCTTAACAGGGACATGCTGCACTTCACTGATCTCACTTCTGCTGACAAGGACCTCTGGTATACAATTGACTTCCCATCTTTTAACCAGGAAGCGACCCAAGAACAAAGCTTCCTGGGTCACTTTGTTTTGACTGACAATCCAAATACCATAATTGTGGAATTTACCCAGGCACAGATTAATTATGGCAAAGTGGCTTACAAGCCTCCCGATCAGGAAATTGGTGTTACAACAAGAGAAATCCAATTCGCATTTACAGTTAAGGACGCTGCTGGAAACTTGGCCAGTGGTCGATTAACCATTGTGCTCCAGCCAGTGAACAATAAACCTCCACAAATTACCAACACTGGGTTGAATGTGGTGAGTAAGAGCACCTACGTCATTGGCAAAGACGTCTTGGATGTAACAGATCAGGACACGGTTTCAGAGAACATTACCTTCACAGTGATACAGACCCCAAACAAAGGGGTGCTCAGATGCCGGGAAAAAGATCTCACAACCAAGAAAATCTTCCAGCTAAGTGACATAGAGGCAGGTTTGCTTGTTTATGTCCACGGTGGAAGTGGAGACTCACTACATGATCAATTTAAATTAGATGTTAGTGATGGTATTCATCATGTACCTATAACTGTGAGAGTCAATATAAGGCCCATTGAGCCAGTTATCCCAGTGGTCACCATACATCCAGGAACATTAGACATAACCGTTGATGTAACTGAGAATGGAATAGTTAAGATTACATCTGAGGATTACAGGCCAAACGCTGAAGGCATCAGTATAACCCTTAAAGTGGAATCCACTCCCAGATTTGGTGTAATCCAGGTAAATAAAGTCCTGTCTAATATATTTACACTTCGCAGCTTGATAAATGGTGCTGTGACCTACATTCATACAGCTGGCGAGGTAGGACCAGCCAGGACTAATGATTCTTTTAGTCTTACTGTCTCTGGCAAATGGATTGTGAATGgcaaaatgattcaaaatgtCATGGTTCATGTGTCTATTCATCCTGTGGATAACAGTCCACCTGTCGTCCGCATAGGGGAGCAGTTTACTGTAGAGGAAGGaggtaaaaatattattaaagagGACAACATACAAGCTAGGGACCTGGATACAGAAATAGAATTTATTCTGTGCACTATAATGACACAGCCATCTTTtggatttgttgaaaatgtttctCCTGCACCAGGTTATGAAAAGTCAAGATCGGGGATTGCAGTTAGTGCATTCACTGTGAAAGATATTCAACTTGGACATATTCACTATGTCCAAAGTGTTCATAAAGGTACAGAGCCAGTGGAGGATAGGTTTACCTTTCAGTGCACCGATGGAACCAACTTTTCTGATAGACACATTTTCCCTGTCATCATCACCCCAGCAAACGATGAGGAACCTGTCGTGTTCTGTCGGGAATTTGTGGTAATGGAAGGCATGAGCTTGACAATTGACATTCCTATTCTTAATGCAATAGACATTGATATTCCCAAAGACATCCTGGAATTTGAGATTGTTACCAGTCCAAAGCATGGCAGAATTGTTCAGCATCTTACAAATAGGACAGAGCTGATTGTTAAGTTCAGACTGGAGCAAATCCAAGCTGCTTCTTCAATCATGTATGAACATGATGGCTCGGAGACGATGAACGACACTTTTAGAGTAAGACTGACTGACGGGAAACATGTGGTTGAAAAACAAATTGTTGTTTTGATTCTGCCTGTGGATGATGAAACACCAAGATTGTCTGTAAACAACGGACTGGAGGTTGAGATAGGAGAAACTAAAATAATCACGAACAGACTTCTTAAGGCTACTGACCTTGACTCATTGGACTCCAATCTTACTTTTATCCTTAGACAGGCACCATCTCAGGGATTTTTACAGCGTTTGGATCAATCTGTAAATTTGACCAATGGAATGAACTTCACTCAGGACGATATTGATAAAGCACTTATTCAGTATATTCACACGGGGCAAGGAGGTGTTCGAGACCTTCTAAAATTTGATGTGACTGATGGCACTAATCCTCTAGTGGACAGATACTTCTATATCACTGTGGGAGCTGTGGATAAAGTATTCCCAATAGTCATAAACAAAGGTGTGATGCTACCTGAAGGAGGTTCAGTGATCTTGACGACAGACATCCTCAGTACATCGGATCTAAACAGCCCCGATGAGCATCTCCGCTTCATCATTATACGCCCCCCATCTCGAGGACGTCTTGAGTGCACAGATCTTCCTGGTATTCCTGTCACTTCCTTTACCCAACTCCAGTTAGCTGGGAGTAAGATCCGATATGTACACACCTCACTAGAGGAAGCCCGTTTGGACAGCTTTGAATTCCAGGTCATGGATGGTCGGAATGTAGTGTTTCGGACGTTCCGTGTATCCATCACAGATGTGGATAATAAGCGACCAGTTTTGAGTGTGCACTCACTTGTTTTGGGTCAAGGCACAGCAAAATGTATTACACCTTTCGAACTTGGAGTAGAGGATCAAGACACACCTCATCACCTTCTCCGTTTCTCAATCACACGAGGCCCTGTACATGGGAAGATACTTTACAACAGTACACGCTCTGTTACCACATTCACCAAAGAGGACCTGAGGGAGAACCTCATTACATACAAGCATGACGGGTCGAACCATGGGGAGGACACCATCATGTTCACGGTCACAGATGGAACCCACACTGGGTTCTATGTGCTCCCAGAAATGGAGTATGAAACTAGCAAACCTCAGGTTCTCACAATCAGGATTAGTCTGGAGGAACGAGTGACTCTGAGAATAGTAGTGAACCGTCCAGCTTTGTCTCTTACTGTGCTGAAGACAGGACAGCTGGGCTTCAGGTTCTCCAGGAAAGTGCTCAGAACTGTGAAAAGCACACAAGGGACGGAAGTGAGGAGTGTGGATTTGATATACAGATTGACAGAACCTCCAAGATATGGCTTTATCAGACACTCTGATCTGAACAACACCAATACCTTCACTCAAGCTGATATCAATGATATGAAGATCTATTACATCCTTCTTGATGGAGTCAATGCCACCACggatgtttttacatttactgttgaAGACAAAGaGGGAAACCATCTGCGTCCAGAGTTATTCCGGCTCCACTGGTGCTGGGTGTCCTTCGAGAAGCGGATTTATCAAACAGAGGAGAAGAACAACTTGCTGGAGATCACGCTGAAGCGCAGAGGTTATCTCAGAGAAACCTCATTTGTTActatCAGTACAGTAGATGGCACTGCGGTACTTGGTCAGGATTTCCAGGTTAGCCCCCAGCGTCAGGTCCAGTTTAGTCCCGGTCAGACCCGGGCCACATGGAGGCTGCGAGTCCTTGATGACGAGTTATATGAGATATCTGAGAGTTTCCAGATTGTTCTCTCTGACCCTGTGCTGACATTACTGGAGCATCCAAACGTTGCAGCTGTAGAACTTGTTGACCTGGAAgatgagtccACAGTGTTTTTCTCCCAGAGTGAGCTAAAGGTAGAGGAGGATGTGGGAGAGCTACTGATCCCTGTTCATCGCCGAGGAGACATCAGTCAGGAGCTCATGGTCACATGTTACACACAGCAAGgcAGTGCGAGAGGAACCTCCCCTGGCTCTGTGCTCTCCTTCTCTGATTACATTTCCCGGCCCGATGAGCGCTCCAGCGTCCTCCTCTTCCACCGAGgacaaagagagagtgtgtgtcgcgtCCTCATCATTGATGACTCGCTGTATGAAGGCCAGGAGAGTTTTAATGTCACGCTGGCCACGCCCATGGGTGGGCGATTAGGGGCAGAGCACCCCAGCGTTCACGTCGTTATCCTGCCGCATCGTGATGATgagccGTCTGTGTTCTTCAGTAAGAGTGTGTATGCAGTGGAGGAGAGCGCAGGTGTGATGGAGGTTCAGGTCTGCAGGAGAGGATCTGATCTTTCTCACCCAACTACAGTCACTatcacctccacctccacacaGCCACCATCTGCCCAGGCTGGTGTGGATTACGTGGCAGTGGGCCTCAGTGTTCACTTCGCACCTGACGTCACTGTGATCACAGTGAAGGTTCTGATTCTGGATGATGTTGGCGAACCGGTGCTGGAAGGTCCAGAACATTTCCAGCTGGGTTTGAGCATGCCCATGAATGGCACGTTGGGACATCCAATCAGAGCCCTCGTTACCATTGACGATTCAGCAACTGATGttCCCTCTGTGCAGTTCGCATTCTCAGAGTACAGTGTGGACGAGGCAGATGGCAGCATTGTCGTCATAGTGATCAGATCAGGTGACCTGACgcaaaggtcagaggtcaggtgTTACACACGCCAAAGCTCCGCCCAGGCCATGATGGATTACAACGAGAGACCGGACACCGATTTGTCCATCATCACCTTTCAGCCAGGAGAGCGAGAGCAGAAGTGTGAAGTCACTTTAGTCGACGATTCTGAgtatgaagaagaggaggagcttCGTTTGGTTCTTGGAATCtccagcagccaatcagcagcGAGGATATCTCTGGGAAAACGGAGAGAGACACTGATCAGGATTTCAGATCGAGGAGACAAACCTGTCATCCAGTTCTCCGAGACACGGCTCTCTGTGCGAGAACCGAGGAACCGTGACGAGACGGAGACTGTGCGAGTGTCAGTGCAGCGTTTGGGAGATTGTTCCAGAACATCCATCGTGCGAGTGCACACACGGGACGGATCGGCCACCGCCGGAGAGGATTACACACCTGTATCAGTGGagctgCAGTTCACTGAAGGTCAGACGCTGCATGTTGTGGAGGTCTCTGTGCTTTATGACACTGAGAGGGAAACCAGAGAGACTTTCACTGTTCACCTCAAACCTGATGATAACATGGTGGCTGAtatacagAACACTAAAGTAATAGTGCACATAGACGAGGGGCCGTCTGTAGGGGGCGTCACTTTTCCTGCGGTTCCTGAAGTCGTGAGTCTCTTGGTCTATGAGAGAGAacacactggaacacacacacactccggtcacggcacacacactcctcctggATACCCGCtcgtgtgtgtgactgcatgcGACCCACAGCACTCTCGGTTCTCGGCACTCtcgtcactgtgtgtgtctgagggtGTGAATGACACTCTGACCGAATTCCGCTGGCTGGTGGGCGGGGCTGAGAGGGCTGCGGTGGGGCAGTTGGGCGAGGCGGTGGGGCAGTTGGGCGAGGCGGTGGGGCAGCTGAGTGAGCTCGAGGCGAGTGTGTTCATGGCTCCGGTGAGGGCCAAGCTGCTGGACGGAGTGTATTTCCGCGCAGGGTGGAAGGTGCAGTGTGTGGCGAGGGCCGTGAGTGTGTCGGGGCAGAGGGGGCTGGAGCTGAGCAGCACTGTAGTGCACATCAGCACAGAAGAggGTATGTGTCAGTCACACACTCCTGGTGTGGTAGGCGCCGAGCCATTTTCCGCTCACATCCGTTACACCGGCTCAGAGGACCGAGATCACCCTCACCTCGTGGCGCTAACCATCAGCTTGCCTCACACAGACGGTCTCTTGCCGCTGATCTCCACTCTGCCTCTCTCGTGGTCAGATGCTCTGAGTGCGGATGTGTCTCGTGCATTTAGCCATCGCTGCTCCAATCTGCTCGATCAGCACGAGGTCACCACTCGCTACGGGTTTGTCCCGaacaactccacacacacacactcacacactctgtggAGCCCGAGTACACGCCGATTCTACAGCAACCTGGACCTGGAGGCGTGTGTGTGGACGTTCCGGGCGTATTATGACCTGTCGGAGCTGCTGAGCGTTTGTGGTGGGACAGTtagcacagacagacaggtaaaTCTGGTGCAGTCGTTCGTATCTTTGCGGCTGCCACTATTCGTCTCGTACCTGTACCCTGCCTCGTCGGGCTGGATGACCTTCGACCTGCGCACTGAGCTGCGGCTGATGTTCGTCTACGACACGTCTATTCTGTGGCAGCAAGGCATCTCCAGCCCTCTTGATACCGAactacaggGTTCTCTGTATCCCACCAGCATGAGAATAAATGATGAAGGCCGCCTGCTGGTCACGTTCAGGACAGAGGCTCGTTTTCGGGGACAGTTTATACTGTTACACTCCGGTTCCTCGCTGCAGTCGGGGGTGAGGTGTGTGGATCAGCCTGcgctctccttctctctgtctctgattaGCACCGAATCCACCTTCGACCAGCCGACTCAGACCTGGAGCTTCACCTCTGAGTATgcggtGCGAGATTACTCAGGCTCCTACATTGTGACTTTGGTCCCCTGTGTAGCTCCGCCCACTGTGGGCTACACCAACCCACCTGTTTGTCAtccccaacaaccaatcacgtTCAGCCTGGATGTCCGTTTTCAGCagGTGAGCGATGCAGTGCCATCCGAGTTCACTCTGAACACATGCCTCTATCTGATGTCTAAGCGAGAGCTCTGGTTGTCTGATGGCTCCATGGGGTTTGGAGAAGAAGCAGATGTGGTGTTCTCTGAAGGTTCTCGGATATTCGGTCGTGTGATGGTGGACCCCCTGGCAAATCTCGGCTCTTCCGTCCTGTGTCAGATCGAGAAGGTGTTCCTGTGCGCCGGGGCGGATGGATACGTGCCAAAGTACCGACCGAGTAGCGGCGAGTTCGGCTGTCTGGCTGACGCAACTGCCCTCGTGTACAGACTCAAGATTTTGGACAAGTCTTCAGCACACACTCAGGATGAGATGTTTGGTGGTGTGTGGTTTGACGCTCAGTTGGCGGAGAACACTTCAGGAGCTGAGGCTCTTGTCCAGCAGGCTGGCTCAGACGGCTTCAGCTTCTCTTCTGCGCCGCTTTTTCAGGTCGCTGCGGGTCGCCAGTGGTACGTCCATGTAGTTTACACCGTCCACGCCGGAACAGGACGCAAACGTCACACCAGGAGCGAGAGAGACCACCACGCTATAATACCATCAAACCCAGGCTTTACGAAAGATGAGCCAATAGGACGGCAGAACAGCCGTGGCACTAACCTCCAGCCAATCAGCATCCAGAGTGCGGCGAGTGCGTTACACGTCCCTGCTGGAGCTGCGTCAGGTCTGGACGTGGACTCGCACACGATCGAGGAAACACACGGAAATCAGCCTAAAGTTTTGATGTTCCAGGCAGCCATGGTGCTTTTAGCCGTCACAGTCTTCCTGACTGGAgtcacactctgtgtgtgtgtgttcagaaaaaggaaaacacagaccacgaagaaacacacacactctctgagaccgaacacacactctgtgtcaGCACACACCCGGCCTGCTGGACCACACACTTATTCTGGTTATCCCAGggggaggcagagagagagagagcattctGGAAACTCTGAAGTCTGATGGCTGAACGCTggacaaggacacacacacacacacacacacacacacacacacactgtctgagGTCAAACACAAGCTCATTGATTTGTGACATTGATCTGTGATTGGGTGAAATAATGGAGATGACAGTAACAGAAATGAGCTGATCATTTGTGCTTCATCACAATGtgactacattttaaaaagaaagaaagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307893 lncRNA upstream 22395 23527428 ~ 23562384 (+) True G260074
TU307905 lncRNA upstream 29702 23554596 ~ 23555077 (+) True G260083
TU307815 lncRNA upstream 110335 23473913 ~ 23474444 (+) True G260011
TU307813 lncRNA upstream 115722 23468826 ~ 23469057 (+) True G260009
TU307756 lncRNA upstream 222489 23344862 ~ 23362290 (+) True G259978
TU308085 lncRNA downstream 222407 23826892 ~ 23827631 (+) True G260222
TU308086 lncRNA downstream 257157 23861642 ~ 23862570 (+) True G260223
TU308080 lncRNA downstream 263166 23867651 ~ 23869556 (+) True G260217
TU308096 lncRNA downstream 313396 23917881 ~ 23918391 (+) True G260232
XR_004579726.1 lncRNA downstream 398064 24002549 ~ 24003381 (+) True LOC117599261
XM_026921416.2 mRNA upstream 800 23572197 ~ 23583979 (+) True LOC113530971
XM_026920110.2 mRNA upstream 16106 23563545 ~ 23568673 (+) True anapc10
XM_026920292.2 mRNA upstream 38706 23530494 ~ 23546073 (+) True otud4
XM_026920293.2 mRNA upstream 39923 23530494 ~ 23544856 (+) False otud4
XM_026920291.2 mRNA upstream 39923 23530495 ~ 23544856 (+) False otud4
XM_034311840.1 mRNA downstream 619 23605104 ~ 23617167 (+) True rnf150b
XM_026920685.2 mRNA downstream 26108 23630593 ~ 23634770 (+) True si:ch211-149b19.2
XM_026920244.2 mRNA downstream 31762 23636247 ~ 23642564 (+) True si:ch211-149b19.3
XM_034311847.1 mRNA downstream 67561 23672046 ~ 23763537 (+) True LOC113530587
XM_034311538.1 mRNA downstream 164750 23769235 ~ 23798029 (+) True znhit6
TU307780 other upstream 195465 23387538 ~ 23389314 (+) True G259993
TU307769 other upstream 201126 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other upstream 201126 23371747 ~ 23383653 (+) False LOC117599309
XR_004579671.1 other upstream 905229 22671625 ~ 22679550 (+) False LOC113530514
trnal-uaa_2 other upstream 1272891 22311806 ~ 22311888 (+) True trnal-uaa_2
TU308306 other downstream 427742 24032227 ~ 24032724 (+) True G260415
TU308384 other downstream 664092 24268577 ~ 24269267 (+) True G260483
XR_004579660.1 other downstream 1020452 24624937 ~ 24634545 (+) False ddx58

Expression Profile