RNA id: XM_026920691.2


Basic Information

Item Value
RNA id XM_026920691.2
length 1739
RNA type mRNA
GC content 0.37
exon number 5
gene id LOC113530554
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23477194 ~ 23480770 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTACTTCATCTTCTCTACATCCACCATCCAGCAACAATGAGGACACAGGTTACACTGCTGCTCATCTGCATGATTTCCTCAGGAGCATTGTCTCTGCAATGTTATCCATATTTTTACGATTACACAGACTATAAGTATAAACCCACCAATTGCACCAATAGGTGTGCCAGTACAACCACTTCAGTGGACATCTatctcATAAGTGGTGTATCTGGTGTAACATACTCTGACTGGGCTTACGATTTTTCTTGCGGATCACCTGAGCAGTGTGTAAACACGAGTATAAATATCGGTGTGGTGAAAATCGCCAACAATACCCAATGCTGCACTACTAATCTCTGCAACAACAGAACCCTGCCAGttATGCCACAGCAGCCCATCAATGGGAGAAAGTGTTATACCTGTAATGAGAATGACTGCTCTCGAACACTGCATTGTGAGGGAGCAGAAGATTGCTGTATCACTGCAACAGttgctcaaggacccaatgTAATGTCCTTGAAAGGCTGTACAACCAAGAACGTCTGCAATACAACTCTACTAAGAGCACATGGACTCATCATAACAGATGTGGAGTGCTGTGAGGGGAATATGTGTAACAGTGCTGAGAGCTTcacactgagtttcctcctcATGATcatccctctgctctcctccatcctcttctACTGAAATGCCAGCCTTTCGAAAACCCTTCATCTGGTCATATTATGAAATTTTCTACTaaattttctcttttgcatgtttctcaaccagaagtaagtAGCATAAGTAGCATTTAACAGATTAAGTAACATTTAAATTCCCccgaaaaagaaaacagagaaaatttcatttaaatttttcattCCAATTCAACTGAAAGATGCCATGCCTTTTTACTTCTACATTTATCTCCTAAtctactgatttaaaaaaaaaattgctggcaaattttaaagaattataagttCAAAGCAAGAAATGAATTCTCACTTTGACTATCAGAATCATCCActtcagtctctgtctcatcacctgatcTAAAACACCGGGATGGAAGTCAATTTCCCATACTTTTCATCagctcatttaaacatttagacACGTCAAaagtacagagtgtgtaagctcTCTTCTCTGTTTGATGCTGATGTGACAGAGCAGGAGCATCGCGGACGTTacaattaattcaattcagtaacTATTCATAGCCGTTAATCAAAATGTGATACAATCACACTTTTAACTAACAAGGAAGTCTGGCTGTTTTTACTACTGCGTTTGTTAAACTGCCTTCACAGGAAGATATCAAGGCAAAACTATAAagtagcataaataaataacactgatgTTGTTTGGGTGAAATACATGTTTTCTTAAACTAGacatgtcaaagtatattactggcaaaaataaataaataaataataataattttttgtcattttcagctgtaCAGAGATCTGACAGATTTTCCCAGATTCCCACAAAAGTCAGCATCCTAATGCATCCCAATCTGGTGCAGaattacaaaaagaaaacagaaatgaagtTTTTATGTCGGTTGAggaattcctttttttcttttatctgtcATGTTGCAGTGTTTTTTCTGGAGCCTGTGTTGATATGTGTTAAATGAAAATGCCCCACTGCATGGATTACACTTCTGTTTGTAAATCactaatgatgttttttttcttgctgagaCTTAAAACTtcaaatgaaaccaagaaaatAAACTGATTGGAGCCCA

Function

GO: NA

KEGG:

id description
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307815 lncRNA upstream 2750 23473913 ~ 23474444 (+) True G260011
TU307813 lncRNA upstream 8137 23468826 ~ 23469057 (+) True G260009
TU307756 lncRNA upstream 114904 23344862 ~ 23362290 (+) True G259978
TU307745 lncRNA upstream 128257 23332680 ~ 23348937 (+) True G259968
TU307742 lncRNA upstream 141859 23332680 ~ 23335335 (+) False G259968
TU307893 lncRNA downstream 46658 23527428 ~ 23562384 (+) True G260074
TU307905 lncRNA downstream 73826 23554596 ~ 23555077 (+) True G260083
TU308085 lncRNA downstream 346122 23826892 ~ 23827631 (+) True G260222
TU308086 lncRNA downstream 380872 23861642 ~ 23862570 (+) True G260223
TU308080 lncRNA downstream 386881 23867651 ~ 23869556 (+) True G260217
XM_026920351.2 mRNA upstream 13588 23460595 ~ 23463606 (+) True LOC113530412
XM_026921319.2 mRNA upstream 26482 23447629 ~ 23450712 (+) True LOC113530919
XM_034311581.1 mRNA upstream 33569 23440496 ~ 23443625 (+) True LOC113530555
XM_026921317.2 mRNA upstream 43538 23422194 ~ 23433656 (+) True LOC113530918
XM_026921236.2 mRNA upstream 55966 23414817 ~ 23421228 (+) True LOC113530872
XM_026920690.2 mRNA downstream 2955 23483725 ~ 23486524 (+) True LOC113530553
XM_026921419.2 mRNA downstream 7740 23488510 ~ 23494390 (+) True LOC113530973
XM_034311682.1 mRNA downstream 24421 23505191 ~ 23506978 (+) True LOC117599230
XM_034312172.1 mRNA downstream 26769 23507539 ~ 23509653 (+) True LOC113530383
XM_026920297.2 mRNA downstream 29833 23510603 ~ 23517484 (+) False slc10a7
TU307780 other upstream 87880 23387538 ~ 23389314 (+) True G259993
TU307769 other upstream 93541 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other upstream 93541 23371747 ~ 23383653 (+) False LOC117599309
XR_004579671.1 other upstream 797644 22671625 ~ 22679550 (+) False LOC113530514
trnal-uaa_2 other upstream 1165306 22311806 ~ 22311888 (+) True trnal-uaa_2
TU308306 other downstream 551457 24032227 ~ 24032724 (+) True G260415
TU308384 other downstream 787807 24268577 ~ 24269267 (+) True G260483
XR_004579660.1 other downstream 1144167 24624937 ~ 24634545 (+) False ddx58

Expression Profile