RNA id: XM_034311675.1


Basic Information

Item Value
RNA id XM_034311675.1
length 4601
RNA type mRNA
GC content 0.49
exon number 18
gene id vwa5b1
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20919088 ~ 20953971 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tggacgGAGGGgtggacaaaaaaataaatagttggTTGCTTGATGGGTGGATGTTGGATAGATTGGATAGGAGTAGAGAGCCCTTCTCACGCCATCCGGGCAGATGCTGACCCCTCCGCCCATTCTGCTACCAGCATTGTGGTCACCCTGGCAGACAAATACACCTATGACTGTCCTGTGGAAATCATCATCTACCCCAGTGAGCCACACCTGCCTCATGTGCTTATCGAAGATGGAGACATGACGCTGGAAGAGTATGATGAACATCTGAAGGGGAGGAGTGACTACATCAAGGCCATCAAGAAGGACTCTAGCAATGAAAAGAAAGTGGATATCATCCATAAAAGGCTCCATAAAGACATTCTTCACAACCCTGTGGTTATGCTTAACTTCTGCCCCGACCTACAAtccatgacctctgacctgcgCAGGGTGCAGGGGGAGTTTATCTTCCTTATTGACCGCAGTGGGAGTATGAGTGGTGTCAATATCAGCCGTGTTAAGgATGCCATGGTGGTGATTCTGAAAAGCCTTTTCCCCGCCTGCCTGTTCAATATTATCGGCTTTGGCTCGACGTTTAAACCGCTGTTTGCCACCAGTCAGAGTTATGATGAGGAAAGCTTAGGCACTGCGTGTGAATATATAAAGAAGATTCGGGCTGACATGGGTGGCACCAACATCCTGGCCCCGTTGAACTGGATCCTGAGGCAGCCGGTGCAGCGCAGTCATCCTCGCCTGCTCTTCTTCCTCACGGATGGAGCCGTCAGTAACACGGGCAAGGTCATCGAGCTGGTCCGCAGTCATGCCCGATTCATCAGGTGCTACACATTCGGTATAGGTCATGGAGCTTGCAGGCGGCTCATCCAGGGCCTCGCGACTGTTTCCAGAGGTGCTGCTGAGTTCCTGGCAGAAGGAGAAAGACTGCAGCCTAAGATGATTAAATGCCTGAAGAAGTCCATGGCCCCCGTTCTGAGTGACATCTCCATTGAATGGCTCTATCCTGAGACTAAGGAGGTGCTGCTATCTCCAGTGGGAACGACGTACCTGTTTCCTGGTGACCGGTTGATTGGATACAGCGTGGTGTGTGACACAACGCGCTACCACTCCAACCCCAAGTCTGACAAGCGACGGCGCTATAGCATGATGCGCTCCAATGAGTCGGCCAGCTCTGTGTTCTACCACAGTCAGGAGGAAGAACCAGGGAAGAGCAGCTCGGATGGGCATGGTGCTGCCAGGGATATATCAGGCACAGGAATGTCTGATGCATACCAGAGCATGTCTGAAAGCAGCCCTGGCATGGTGGAACAGGATGGCATTGGGACTAACATGAGCTCTTCTCCGAGAAGGCGTGCATACAGCACCAATCAGATTGAAGAATATAATCCTCTGAAGAAGGCCTACACATCCAGTGACCCGAGCTCAGTGGTGGGGAAAAACCCTCTGAGGAGAGCCAAGGTCCAGGAGCTCATCGGACAGACGAGTCCTGATAATGGGGTCCAGTGGAAGATGAACTATCAGCCTCAGCTGGCCACTCTGTGTGCCACTTCGTCCAAAGCGCATGGACGCCCACTGCCTGACGAACCCCATGGAGACACTGAACCAGAAGAAACCCAAGTGAACCCCAGTGCGCAGGCAGCCACCCGCGGCCAAAACAAGGAGAATGGCTCCAAATCCTCCAGTGACAGCCCTTCCCTGGGCAGCACAGGAGAAGAAGATGGATACACACATCAACTCTGTGAAGCAGAAACGCCTCAAGACCCACATGCTCCGGACTTCAAGCCCATGAGCAAAGGTAAAGGAGACTGCAAGGCAGTCATCTCGGGACTGCTGTGTGGGAAACCTGTGAAATGGGAGGTGTGCTTCGATATCGAACCCTACCTGAAAGGGCGTGAGCGAGAGGAAAAGGTTCATGAGGATCTGTGGAATGAAACCTTCCATCATCTGGCTGCAAGGTCGATTATTCAGGACTTTGAGCAGATGGCTGACAAAGAGTGTGAGATTGAGCATGgTTCCGGGAGGCGCTATCAGCTGTACGCCATGCAGACTAGCAAAGCTTGCAACATCCTGAGCAAATACACAGCCTTCGTGCCCATTGATCTAGACAGCAATGAATATTTACCTACTTCTATTGAGTATCTATACACTGGGGAAGAGCGGAAGGGTAGCTCACATTCGAGCCAGCGTTCAGGAAGCAGGAAGAGCCGTGGTTATTCGGTGGGTTTGGGCCACTCACAGTCCGGCTGCCTGGCTGAGGCTGAAGACCAAACAACACCAACTTTTGAAGACAAAGCCTCTCCTTGTAGCACTCCCTCATCAGCTGGATGGGAACGGTTCAGCTTCACAGAAGCCTCTcagaggagtcccacagtgtcCTCCGACCATTCGCAGAGATCAGTGGAAAGCCTCTTCTCAGCCAGGTTGAGTCTCACCAGAACACGGCTCCTGACTAAAGCAGCCCGGGGCTTCATGTGCCGCGCACAAAGCAAAGCTGAttcagtgggagagagtgatAATGACAACAAGGACTACATCCCTCTGGTGTCTCTGCAGCTGTCCTGTGGTGCATTTGTCCTTGACGCTGCCTTGTGTGAGGCCATAAATGTCCCCATGGACAAACTGAAGTGGACGTCGCCGTTCACCAGCCACAGACTCAGCCTCCCCCACCTTTCCCACTCCAGCAGCAGGAGAACCGACAGTCTGGAGGTCCAGCACAGCTATTCGCCTCCACCTAAAGACTCAGATCTTTCTGAATCTGAGGACATGGTGCCTCGCAGCCCCCGAACCGAAAGCAGCTCATCTGGTTTGGGTGAGGCGTCGCTCTCTCCCAGCTATTCACAGTCCGACAGTGGACGGGGATCCGATTTGGGAACCACAGAGACACCAGTCTCGCCTGGAGGCATGCAGAAGATGGTGCAGGAGCCAGAGGGCATGGTGTGGGCTACGGCTGTGGCCTTGGCGTGGCTCGAGAACAACTCAGCAAGCTACTTCATTGAATGGGAGCTGATCGCGGCGAAAGCAAGCCTGTGGCTGGATGCGCAGGTGGTGCCAGAGGGACGAGAGCTGGGGGCGGTGAAGGCGGCGGCCAATCAGCTCTTCATCATCCTCAGACACTGGGATGAGAACCTGCAGCTCAACATGCTGTGCTACAACCCCAACAGCATGTAGATCTATAAAGTACGTTATTGGCTGGTGATTTTGTTGGGATTTTATCCTGTACAGCATCATATGTCTGGTTTTACTTGATCCACACTCCATGCAAGTTGTCAAACCGTTGGTCTGTCAGTTCACTAAAAACTGAACGgaatttaaaatgacattagtGATGTGATAATTATACGGTATGCTGAGCTCTTACACCTTTTTaattctttccctttctttttggAAACAAAGGCACcacattttaatttgttcatCATATTATCAAAAATGCTGCAGTGCTGCAATAGGTTCTATGGAAGGCCTAAAAGATTAGTTTCATTAAAAGCTATTTCTGGGCACATTAAACTCTGGTGCACCGGAAGACCTAAAAACTGATAATTTGATGGTAAATTATTCATAACCAAGGTTATATGCAAACCAGTATATAGTTGTGACAGCTGATGTGGATTCTGTTGGCACATCCACTCAGGGATGTCCACGCTGACATCGAAGCATGCTATCGTTTGTTAACATTCCGTCTTTCAAGTTGCAGAATCCAAGCAGGATGTAACCGGAACGTGTTTGTGTTCGTCTCggagcatatatatatatactgtaaatgtatttttatttgttggaCTTGGTTTGACTTTTGGTGTGATTGCTGCTTTCTGTAATGAGTAAAGCAGATCTCGTGTACTGCAAATAGCTGTAAACACGGCTGTTTCTTCAATGGTCATCATCTTACAAAGTTCCTACAGCATTCTATGGAAATTCTTTTAATTAAGGCACTGAAGGATCAAACCTTTTAATGAACGCTTGCTCTGTTGTAAAAGGCAGcagtattatattgtatttaccATGCAGTGTTATTTTATTGTACTTGGAGACTTAATAAGATGTCAAACTATTGCTGAGACAGCACTTCCTGTCGAGTGCTCTCCAGTCTTAAGTGCCTGACCCAGCCGAACTTCTCCGATGAACTAtgatacgttttttttttcctgtaatgcCACGTGAAGTTTATCTCTTGTGTGCTGTTTACTAGTGTATTTATGAAATCTGTGAATCTGTTGTTGCTGAATTTCGCCATCGTTTGATTGCCTTAACGTGTGGCAAATCGTATGTGAATTCCACGAAATTTCTGCTGAGTGTTATCCACATGattgactgtttttatttatttatttatttattttttaaattttccataCAAGATTGTTACTGTCACTCAGGTATCGCTGCTGTGTAGCTTGAGTCCCTGTGGTGAGCATGAGTCTGTTGATGCATGAGTTCGTCTGAGAGCCACCGCTGATGTGTGACGTTTTGCTTGTGAATGTGGCCGTTGACTCTTCGCGTGAAAAAACGTGAACTCTATGTTTGAGGTCAATCGTGTTTTTCCAAAGTGGTTATCAAGCGCTTGTCAGCTCGCTGTAGTGCCTCTTGTGCAATGACGGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579744.1 lncRNA upstream 13050 20908816 ~ 20911082 (+) True LOC117599282
TU305939 lncRNA upstream 16673 20903147 ~ 20907459 (+) False ubxn10
TU305900 lncRNA upstream 133987 20786242 ~ 20790145 (+) True G258362
TU305794 lncRNA upstream 167594 20754692 ~ 20756538 (+) True G258275
XR_004579729.1 lncRNA upstream 212174 20708115 ~ 20711958 (+) True LOC117599266
TU305997 lncRNA downstream 21927 20975898 ~ 20976359 (+) True G258439
TU306029 lncRNA downstream 131411 21085382 ~ 21088222 (+) True G258460
TU306047 lncRNA downstream 139358 21093329 ~ 21093844 (+) True G258476
TU306054 lncRNA downstream 149743 21103714 ~ 21105101 (+) True G258483
TU306031 lncRNA downstream 153376 21107347 ~ 21108015 (+) True G258462
XM_034312060.1 mRNA upstream 18736 20903105 ~ 20905396 (+) True ubxn10
XM_026921039.2 mRNA upstream 18736 20903107 ~ 20905396 (+) False ubxn10
XM_026920955.2 mRNA upstream 21361 20900122 ~ 20902771 (+) True cptp
XM_034312195.1 mRNA upstream 37623 20883692 ~ 20886509 (+) False LOC113530777
XM_026921097.2 mRNA downstream 43698 20997669 ~ 20999732 (+) True fam43b
XM_026920704.2 mRNA downstream 98699 21052670 ~ 21056506 (+) True LOC113530567
XM_034312061.1 mRNA downstream 98869 21052840 ~ 21056506 (+) False LOC113530567
XM_034312062.1 mRNA downstream 98874 21052845 ~ 21056506 (+) False LOC113530567
XM_026921161.2 mRNA downstream 105805 21059776 ~ 21062377 (+) True cdaa
XR_004579743.1 other upstream 16882 20903105 ~ 20907250 (+) False ubxn10
TU305940 other upstream 19059 20903147 ~ 20905073 (+) False ubxn10
XR_003403172.2 other upstream 409937 20510244 ~ 20514195 (+) False LOC113530729
TU305571 other upstream 525418 20390809 ~ 20398714 (+) True G258096
TU304946 other upstream 1445237 19478302 ~ 19478895 (+) True G257622
TU306101 other downstream 274349 21228320 ~ 21230871 (+) False si:ch73-290k24.5
TU306357 other downstream 584283 21538254 ~ 21542254 (+) False LOC117599233
trnal-uaa_2 other downstream 1357835 22311806 ~ 22311888 (+) True trnal-uaa_2
XR_004579671.1 other downstream 1717654 22671625 ~ 22679550 (+) False LOC113530514
TU307769 other downstream 2417776 23371747 ~ 23383653 (+) True LOC117599309

Expression Profile