RNA id: XM_026920723.2


Basic Information

Item Value
RNA id XM_026920723.2
length 2291
RNA type mRNA
GC content 0.47
exon number 8
gene id eef1a2
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14035800 ~ 14042467 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATGGTCTCAACAGTGCATACCTGGCCCACTTAGGAAAAAAGTGATTCATCAGGTTTTAAAACTGAAGAAATTTGGGTCAACATGCTGAGTCACtgaggtttgtgtgtggtgtttttctctctcttctctatcTGCCTACTTTGTCCTGCTGCCTTTGCAGTTCTCTAgcttcagtctctctctctctctctctctctctctctcaccctctctcacCCTCCCTTACCCTCCCTCTGTCAACCGCCCTCTTCACTTAAAGTGCTGCATTGCGTTCCCTGGGCAGACACAGTTGGAGCGTGCCAGCCCCAGTGTTCTTGAGTGTATAGAAGGAGCACACAGAGCCGCCTGTATACAGCTGTGGGTGCATAACTCCACTGCCAGAGAACTCTGGGTGGATACGTACTCACTTCTTTACATCTGTGATTCCTTCGTTATGGGGAAGGAGAAGATCCATATTAATATAGTTGTGATTGGCCATGTCGATTCTGGGAAGTCCACCACCACTGGCCACCTCATTTATAAGTGTGGTGGCATTGACAAGAGAACCATCGAGAAATTCGAGAAGGAGGCTGCAGAGATGGGGAAAGGTTCGTTTAAGTATGCTTGGGTTCTGGACAAGCTGAAGGCAGAACGAGAGAGAGGCATCACAATAGACATCTCCTTGTGGAAGTTTGAGACCTCTAAATACTACATCACCATCATCGATGCTCCAGGACACAGAGATTTCATCAAGAACATGATTACAGGAACTTCCCAGGCAGACTGTGCTGTTCTTATTGTGGCAGCTGGGGTAGGTGAGTTCGAGGCGGGTATCTCTAAGAATGGACAGACGCGTGAACATGCCCTGCTGGCATACACGCTGGGTGTCAAGCAGCTGATTGTTGCCGTTAACAAAATGGACTCCACAGAGCCTTCTTACAGCGAGAAGCGCTATGACGAGATTGTTAAAGAGGTCAGTGCTTACATCAAGAAGATTGGCTACAGCCCTGCCTCTGTACCCTTCGTCCCCATTTCTGGATGGCATGGGGACAACATGCTGGAACCTTCCCCTAATATGGCATGGTTTAAAGGCTGGAAACTTGACCGGAAGGAGCAGCATGCCACTGGAATCACTCTCCTTGAGGCCTTGGACACTATCATGCCTCCTACACGTCCCACTGACAAGCCTTTACGCCTTCCTCTGCAGGATGTTTACAAAATTGGAGGCATCGGGACAGTACCTGTGGGCAGAGTGGAAACCGGCATCCTGCGTCCAGGCATGGTGGTGACCTTTGCCCCTGTCAATATCACCACAGAAGTGAAGTCTGTTGAGATGCACCACGAGTCCCTGAGTGAAGCAGTACCAGGTGATAATGTAGGATTCAATGTGAAGAACGTGTCAGTGAAGGACATTCGCAGGGGGAATGTGTGTGGAGACAGCCGGTCAGACCCACCCCAGGAAGCTTCAGGCTTCACAGCACAGGTTATCATTCTAAATCATCCAGGGCAAATCAGTGCCGGCTACTCCCCCGTCCTCGACTGTCACACGGCTCACATCGCCTGCAAGTTTGCCGAGCTGAGGGAGAAGATTGACCGTCGCTCAGGGAAGAAGCTGGAAGACAACCCCAAGTCCCTGAAGTCTGGAGATGCTGCCATTGTAGACATGATTCCAGGGAAACCCATGTGTGTGGAGAGCTTTTCTCAGTATCCTCCTTTGGGACGCTTTGCTGTGCGAGATATGAGACAAACCGTTGCTGTTGGCGTCATCAAGAACGTAGAAAAGAAAATTGGTGGGAGCGGCAAAATCACCAAATCAGCCCAAAAAGCTCAGAAAGCTGGCAAATGAATCTTGTTGCCCTTGTAGCATTGTAGTTCTGCTcccaagcagcagcagcagcagcagccccCATATTATATCTGGGCATGCTCACCTGGCCTATTGCACTTCAATCCCATTCTACATCACTGACTGGATGATTGTCATTCACATTCAGATGACTGCAAATATTTATTGAATGTTTGACATGGCTTTATTGTAATTTAAGCTCCCAGACTTAGGTCTTTACtataatatgtattataataCTGAtgttatgtatatgtaaatgtgtataaaattcaTACATAGCAGAAAGTTTCCATTTGAGGTTTGTGCTGCAGTCATAAAATGAGAGATTGTGATCAGGTTAAAGATTTGTTGTGGATTTATTCAAAACTGTGGATGCCAATAGGCTTTGACTTGATTCCTGTTTTTGTAAGCTGGACTTAATGAATGAACCAtttagaagaaataaaataaggttgTTTGACA

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03231 EEF1A; elongation factor 1-alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301364 lncRNA downstream 335395 13700009 ~ 13700405 (-) True G254567
TU301398 lncRNA downstream 339180 13692797 ~ 13696620 (-) True G254600
TU301397 lncRNA downstream 370327 13664893 ~ 13665473 (-) True G254599
TU301384 lncRNA downstream 421137 13614428 ~ 13614663 (-) True G254587
TU301365 lncRNA downstream 444830 13590500 ~ 13590970 (-) True G254568
TU301888 lncRNA upstream 488358 14530825 ~ 14532588 (-) True G255020
TU301946 lncRNA upstream 657757 14700224 ~ 14704270 (-) False G255071
TU301947 lncRNA upstream 657757 14700224 ~ 14704270 (-) True G255071
TU302215 lncRNA upstream 833177 14875644 ~ 14878506 (-) True G255306
TU302322 lncRNA upstream 1137919 15180386 ~ 15180640 (-) True G255403
XM_026920634.2 mRNA downstream 88231 13814838 ~ 13947569 (-) False sulf2b
XM_026920633.2 mRNA downstream 88231 13814838 ~ 13947569 (-) True sulf2b
XM_034311846.1 mRNA downstream 88231 13819191 ~ 13947569 (-) False sulf2b
XM_034311844.1 mRNA downstream 88231 13819191 ~ 13947569 (-) False sulf2b
XM_034311843.1 mRNA downstream 140838 13814838 ~ 13894962 (-) False sulf2b
XM_026920724.2 mRNA upstream 105 14042572 ~ 14048229 (-) True mrgbp
XM_026921080.2 mRNA upstream 7977 14050444 ~ 14054172 (-) False sac3d1
XM_026921081.2 mRNA upstream 7977 14050444 ~ 14053773 (-) True sac3d1
XM_026921076.2 mRNA upstream 12935 14055402 ~ 14060447 (-) True haus8
XM_026921077.2 mRNA upstream 12935 14055402 ~ 14060446 (-) False haus8
TU300417 other downstream 1876440 12158772 ~ 12159360 (-) False ptk6b
trnae-cuc_33 other downstream 1894627 12141102 ~ 12141173 (-) True trnae-cuc_33
XR_003403207.1 other downstream 2142798 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 2143380 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 2467270 11556887 ~ 11568530 (-) False avpr2ab
XR_004579685.1 other upstream 86749 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 86749 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 86749 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other upstream 86749 14129216 ~ 14146831 (-) False LOC113530423
TU301948 other upstream 656805 14699272 ~ 14704270 (-) False G255071

Expression Profile