RNA id: XM_026920738.2


Basic Information

Item Value
RNA id XM_026920738.2
length 1702
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC113530599
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14669816 ~ 14673966 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTACTGCCCTGTGCATTCATTTGGCTGCCTTCCTGCTCTCTGTCCATTCTGCCTTTCTCTCACTCAACTCATTTACTCCAACCAAAATGAGCACGCTGCAAAGCTATTCTGTGCGTTCGTCTGGGCCCCTGGCTCAGGTGTCCATCCAGCGCAGCTCTGTGGTGCCCGCTTTCCGGGCAGCCAGCATCTATGGTGGAGCTGGTGGCAAGGGCACTCGTATCTCCTCAGCCTCCTATAGTGGTGTGCAGAGTGGGCTGGGATCTTCTTCCCTGTCCAGCTCTTTCCAAGTAAGTGCCTCTGGGGCCACAGGAGAGATCATGGGCAACGAGAAGATGGCCATGCAGAACCTGAACGACCGTCTGGCCTCCTACCTGGATAAGGTTAGGACCCTGGAGAAGGCTAACAGCAAGCTGGAGGTGCAGATCCGAGAGGCTCTGGAGAAGCGAGGCCCTGATGTACGTGATTACAGCCGCTATCAAGCCATCCTGGATGACCTGCGCAAAAAGGTCTTTGATGCTACTGTGGATAATGCCCGACTTGTGCTCCAGATCGACAATGCTCGCCTGGCAGCTGATGACTTCAGAGTGAAgtaTGAGGCTGAGCTGTCCATCCGGCAGTCAGTGGAGGCTGATATTGTTGGTCTGAGGAAGGTCATCGATGATACCAACATAGGTCGCATGAACCTGGAGAGTGAGATTGAGGCCCTCAAGGAggagctcatccacctcaagaagAACCATGAAAATGAGGTAATGGACCTGAGAAACCAGATTGCTCAGTCAGGAGTGCAGGTGGATGTTGATGCTCCTAAGGGACAGGATCTGGCTCAGATCATGGGGGAGATCAGAGCCAAGTACGAGAAGATGGCCCAAAAGAACCAGGAGGAACTCAAAGCCTGGCACGAGTCACAGATCCAAGAAGTACAGGTACAAGTCACACAGAACACAGAGGCCCTGCAGAGTGCACGAACAGAAGTCAACGACCTCCGCAGACAGATTCAGACACTAGAGATCGAGTTGGAGTCACAAAAGAGTCTGAAAGCTTCGCTGGAAGGCACACTGCGGGACACGGAGATGCGGTACAACATGGAAATCGAGAATCTGAATTCCGTCATCCTGCAGTTGGAGGCTGAGTTGATGCATCTGCGCAACAACATCCAGCAGCAGACACAGGAGTACGAAGCTCTTCTCAACATGAAGATGAAGTTGGAGGCTGAGATTGCCACCTACAGAAGACTTCTGGATGGCGAAAACTTCAAGCTCGAGGATGCTGTTGATGAACAGAAAAAGGTTAAAGTGATGACCGTCACACAGACCCTTGTGGATGGAAAAGTGGTGTCCTCAACCACAGAGACCAAGGAGAGGAAGTTGTAATCAGTCACCAAGCCCTCACCAGCAACACAACACTAACAACTCATGAGCCTGTACTGACAACCATTCACACAGTGGGTGGTGTGGaaaagttatttattatatcCCTAGTGCCTTAATTCAATTGGGTCAGTGCtaatatattttagtatgaATTAATTTTATGGGAAGCATATCTAAAGCTACAGGAATCAAAAGCAATGTTAATAGCATACAATATTTTTGAACATCACAGATATTGTGTACGTTGTTCACAATGTGTACAGTTTCTTATTTGCTTGTTGTGTTGTGTCCATCTGATCATGTCCAATAAATTCATGTCTCATTGTTA

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07604 KRT1; type I keratin, acidic

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301888 lncRNA downstream 137228 14530825 ~ 14532588 (-) True G255020
TU301364 lncRNA downstream 969411 13700009 ~ 13700405 (-) True G254567
TU301398 lncRNA downstream 973196 13692797 ~ 13696620 (-) True G254600
TU301397 lncRNA downstream 1004343 13664893 ~ 13665473 (-) True G254599
TU301384 lncRNA downstream 1055153 13614428 ~ 13614663 (-) True G254587
TU301946 lncRNA upstream 26258 14700224 ~ 14704270 (-) False G255071
TU301947 lncRNA upstream 26258 14700224 ~ 14704270 (-) True G255071
TU302215 lncRNA upstream 201678 14875644 ~ 14878506 (-) True G255306
TU302322 lncRNA upstream 506420 15180386 ~ 15180640 (-) True G255403
TU302303 lncRNA upstream 508191 15182157 ~ 15185972 (-) True G255385
XM_026920791.2 mRNA downstream 23511 14624061 ~ 14646305 (-) True eif4ba
XM_026920792.2 mRNA downstream 23571 14624061 ~ 14646245 (-) False eif4ba
XM_026920793.2 mRNA downstream 23571 14624953 ~ 14646245 (-) False eif4ba
XM_026921048.2 mRNA downstream 55161 14573892 ~ 14614655 (-) False tns2a
XM_026921050.2 mRNA downstream 55161 14573892 ~ 14614655 (-) False tns2a
XM_026920809.2 mRNA upstream 67203 14741169 ~ 14748595 (-) False zgc:171775
XM_026920808.2 mRNA upstream 67203 14741169 ~ 14748450 (-) True zgc:171775
XM_026920159.2 mRNA upstream 166322 14840288 ~ 14847015 (-) True slc16a7
XM_026920171.2 mRNA upstream 299050 14973016 ~ 14979288 (-) False adrm1
XM_026920169.2 mRNA upstream 299050 14973016 ~ 14979288 (-) True adrm1
XR_004579685.1 other downstream 519235 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other downstream 519235 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other downstream 519235 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other downstream 522985 14129216 ~ 14146831 (-) False LOC113530423
TU300417 other downstream 2510456 12158772 ~ 12159360 (-) False ptk6b
TU301948 other upstream 25306 14699272 ~ 14704270 (-) False G255071
XR_003403204.1 other upstream 813791 15487757 ~ 15487859 (-) True LOC113530990
TU302676 other upstream 1041069 15715035 ~ 15820154 (-) False znf512b
XR_003403156.2 other upstream 1973857 16647823 ~ 16695030 (-) False fam50a
XR_004579669.1 other upstream 2139418 16813384 ~ 16831259 (-) False si:ch211-210c8.6

Expression Profile