RNA id: XM_026920739.2


Basic Information

Item Value
RNA id XM_026920739.2
length 2689
RNA type mRNA
GC content 0.43
exon number 11
gene id edem2
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15976896 ~ 16034838 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCCTGTATCAACTGAGCCATAAAGCTATCTGAAGTGTCTTGTAATAAATGTACCTTGGAATTATTATAGTGCTTAATTTTTCTAACATATCACAGCTTCATGCTTACTTTCCTGCTTAACGCCATTTTCTGCGCAACATACCTGTTTCCGATCAACAGCCATGCCTTTACTAAGCGGGAAATGTCTCATTATAGAGACAGAATAAAGTCCATGTTTTACCATGCCTACAACAACTACTTGGAAAATGCATATCCATATGATGAGCTCCGGCCATTGACATGTGATGGACAGGATACATGGGGCAGTTTTTCACTTACTCTTATTGATGCCCTGGATACCTTGCTGATATTGGGGAACCACACAGAGTTTCAACGGGTGGCCACTCTTCTTCAGGACAATGTGAATTTTGACATTGATGTAAATGCCTCAGTGTTTGAGACAAACATACGAGTGGTCGGTGGTCTCCTCTCAGCTCACCTGTTGTCCAAGCAGGCTGGGATCACTGTAGAGGAGGGCTGGCCATGCTCTGGTCCTCTGCTCCGCTTGGCTGAGGATGCAGCACGCAAACTTCTCCCAGCATTCCACACACCCACTGGTATGCCCTATGGCACAGTGAACCTGCTGAGGGGTGTCAGCCCCACTGAGACTCCCATTACCTGCACAGCTGGCGTGGGCACATTCATCCTGGAGTTTTCCACCCTGAGCCATCTCACTGGAGATCCTGTGTTTGAAGACGTGGCCCGAAAGGCTCTCGTTGCCCTGTGGAAAACCCGGTCGGATATTGGCCTGGTTGGGAACCATATTGATGTCATTACCTCAAAATGGGTCGCTCAGGATGCAGGTATCGGGGCAGGGATTGATTCATACTTTGAGTACTTGTTAAAGGGTGCAATCATGCTGCAAGATGAGGAACTTCTTAACATGTTTCATGAGTTTGATATGTCCATAAGGAACTACACTAAGTTTGATGACTGGTACCTATGGGTGCAGATGCATAAGGGTACTGTTTCCATGCCTATATTTCAGTCTCTGGAGGCATTCTGGCCTGGCCTGCAGAGTCTTATAGGGGATATAGAGAGTGCGACAAGGACCTTCCATAACTACTGTACAGTGTGGCGTCAGTTTGGTGGACTTCCAGAGTTCTACAGTATTCCTCAGGGCTATACTGTGGACAAGCGAGAAGGATATCCTCTACGACCAGagttGATAGAGAGTGCAATGTACCTGTATAAGGCCACGGGTAACCCAGCATTTCTGCAACTAGGCAGGGATGCAGTGGAGTCCATAGAGAAGATAAGCCAAGTTAAATGTGGATTTGCAAGTgTGAAGGATGTGAGAGACCACAAGCTAGACAACCGGATGGAGTCATTCTTCTTGGCTGAAACTATCAAGTACCTTTACCTGCTGTTTGATCCTGACAACTTTATTCACAACACAGGCACAACATTTGAACTGGGCGGGGCACATGGGGACTGCATTCTGGGGGCAGGGggttatatttttaatacagagGCACATCCACTTGATCcagctgcattgcattgctgcAGCAAGGACCAAGATGAGCGCTCAGAGCTACAGGACATCCTCCTGAGCTTAACCGAGCACTATAAGCCTTCCATGGACCAATCAGACGAGGCTTTGGGAGACAGAAATTCAGAAAGGATACCATTAAGTCctagagaaagaagaaaagcaatTCGGCTGTCCTGCCCAGTGCAAAGTTTCAGTGCTCGATTTGCAGTCATGGGTCAAGTCTTTTCTGACAGCACATGAACAGAAATTGTTCTGAGATTaagatgtaaaatattaaatttttaaaaaatatttactgaaaACGTGAAATTTTCCCACCTTATatgtaaaacagaaatatgtgtggcagcctgggaaaacctgtcagatgtcactgtggctgaataaaactgataaataaataatatttaaaatgcaaatgtacagtaaaggaataaaataattgttatatgcagtttttgttaaaaataccAAACAATGCCAGCAAGTCATGACATCATGTTTCTAATCATGTTTGATACTACATTACCTTGTCCATCTTGATGTGCCTGAGATAGCCAGCAAGCTAACTAGTTAGAGTACAATGGAGTAAATACAGTTTTTGAAGAGAAAATGACCAGAAGCTGTACAGCCCGAAGAACCACCACAGAAAAGCTCCACTGCTAGTAAAATTAGCAAATATGACCCAGCACACACAAAATATGGTTTCACTTCAGCCAGCTAAAATGGCAATGGAGACACTCACGAACAAGGCTTTAAAGCCATCTAAACTTGAGAGACACTTAAAAcaaagtgtctttttttaaatgcaaattggAAAGTCATTTAGAAATCAAGCCACTATTACTGAAAGAGCATTGAAAGCATCATTTTTTTAGCCTCATACCACATTGCTCGAGCTTGAGAattgctcatttatgcagttattcaatcagccaatcaagatGCGATCgaagtatagactttcagctttattttaagaggttccacaaaaatatggcatttaccatttaggaattacaggaAAGCCACATTATACTTTGCCGGAAAACATCTAAacaaaagcctcccatgttctggaataagattctttggactgatgaaaccataTATACCACATcttgtgtcaaacatggtggaggcagtgttat

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function

KEGG:

id description
K10085 EDEM2; ER degradation enhancer, mannosidase alpha-like 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302785 lncRNA upstream 27307 15949213 ~ 15949589 (+) True G255798
TU302766 lncRNA upstream 95031 15881386 ~ 15881865 (+) True G255780
XR_003403187.2 lncRNA upstream 151444 15823289 ~ 15825452 (+) True LOC113530859
TU302647 lncRNA upstream 151512 15823288 ~ 15825384 (+) False LOC113530859
TU302599 lncRNA upstream 318754 15657777 ~ 15658142 (+) True G255650
TU302796 lncRNA downstream 8319 16043155 ~ 16048021 (+) True G255809
TU302797 lncRNA downstream 13726 16048562 ~ 16052355 (+) True LOC117599274
XR_004579732.1 lncRNA downstream 14386 16049222 ~ 16052382 (+) False LOC117599274
TU302802 lncRNA downstream 143301 16178137 ~ 16181020 (+) True G255815
TU302907 lncRNA downstream 197177 16232013 ~ 16309562 (+) False spo11
XM_026921436.2 mRNA upstream 33893 15895643 ~ 15943003 (+) True prpf6
XM_026920719.1 mRNA upstream 436166 15519342 ~ 15540730 (+) True LOC113530581
XM_026920177.2 mRNA upstream 571249 15399806 ~ 15405647 (+) False naa10
XM_034311955.1 mRNA downstream 24476 16059312 ~ 16173060 (+) True baz2a
XM_026920761.2 mRNA downstream 24476 16059312 ~ 16171317 (+) False baz2a
XM_034311688.1 mRNA downstream 175254 16210090 ~ 16216697 (+) True LOC113530889
XM_034311689.1 mRNA downstream 175814 16210650 ~ 16216697 (+) False LOC113530889
XM_026920414.2 mRNA downstream 197217 16232053 ~ 16326614 (+) True spo11
TU302132 other upstream 809228 15117112 ~ 15167668 (+) False rps21
TU302131 other upstream 856684 15117112 ~ 15120212 (+) True rps21
TU301848 other upstream 1302944 14669804 ~ 14673952 (+) False G254991
TU301849 other upstream 1302944 14669804 ~ 14673952 (+) False G254991
TU301463 other upstream 1904680 14070269 ~ 14072216 (+) False wfdc2
XR_004579698.1 other downstream 175814 16210650 ~ 16229406 (+) False LOC113530889
XR_003403143.2 other downstream 328713 16363549 ~ 16395000 (+) False LOC113530371
TU302910 other downstream 338406 16373242 ~ 16396212 (+) False LOC113530371
TU303060 other downstream 473189 16508025 ~ 16508380 (+) True G256046
XR_004579712.1 other downstream 1036300 17071136 ~ 17120941 (+) False itga5

Expression Profile