RNA id: XM_034311950.1


Basic Information

Item Value
RNA id XM_034311950.1
length 2507
RNA type mRNA
GC content 0.44
exon number 9
gene id edem2
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15976896 ~ 16034838 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATATTGGGGAACCACACAGAGTTTCAACGGGTGGCCACTCTTCTTCAGGACAATGTGAATTTTGACATTGATGTAAATGCCTCAGTGTTTGAGACAAACATACGAGTGGTCGGTGGTCTCCTCTCAGCTCACCTGTTGTCCAAGCAGGCTGGGATCACTGTAGAGGAGGGCTGGCCATGCTCTGGTCCTCTGCTCCGCTTGGCTGAGGATGCAGCACGCAAACTTCTCCCAGATCCCTATCCAATCAAGCATccgtgggatgtgctggacaaacaagtacggtccatggaggccccacctcgagcttacaggacttaaaggttctcctgctaacatcttggtgcaaGATACCACAGCATACCTTCAGAAgccttgtggagtccatgcctcgacagCATTCCACACACCCACTGGTATGCCCTATGGCACAGTGAACCTGCTGAGGGGTGTCAGCCCCACTGAGACTCCCATTACCTGCACAGCTGGCGTGGGCACATTCATCCTGGAGTTTTCCACCCTGAGCCATCTCACTGGAGATCCTGTGTTTGAAGACGTGGCCCGAAAGGCTCTCGTTGCCCTGTGGAAAACCCGGTCGGATATTGGCCTGGTTGGGAACCATATTGATGTCATTACCTCAAAATGGGTCGCTCAGGATGCAGGTATCGGGGCAGGGATTGATTCATACTTTGAGTACTTGTTAAAGGGTGCAATCATGCTGCAAGATGAGGAACTTCTTAACATGTTTCATGAGTTTGATATGTCCATAAGGAACTACACTAAGTTTGATGACTGGTACCTATGGGTGCAGATGCATAAGGGTACTGTTTCCATGCCTATATTTCAGTCTCTGGAGGCATTCTGGCCTGGCCTGCAGAGTCTTATAGGGGATATAGAGAGTGCGACAAGGACCTTCCATAACTACTGTACAGTGTGGCGTCAGTTTGGTGGACTTCCAGAGTTCTACAGTATTCCTCAGGGCTATACTGTGGACAAGCGAGAAGGATATCCTCTACGACCAGagttGATAGAGAGTGCAATGTACCTGTATAAGGCCACGGGTAACCCAGCATTTCTGCAACTAGGCAGGGATGCAGTGGAGTCCATAGAGAAGATAAGCCAAGTTAAATGTGGATTTGCAAGTgTGAAGGATGTGAGAGACCACAAGCTAGACAACCGGATGGAGTCATTCTTCTTGGCTGAAACTATCAAGTACCTTTACCTGCTGTTTGATCCTGACAACTTTATTCACAACACAGGCACAACATTTGAACTGGGCGGGGCACATGGGGACTGCATTCTGGGGGCAGGGggttatatttttaatacagagGCACATCCACTTGATCcagctgcattgcattgctgcAGCAAGGACCAAGATGAGCGCTCAGAGCTACAGGACATCCTCCTGAGCTTAACCGAGCACTATAAGCCTTCCATGGACCAATCAGACGAGGCTTTGGGAGACAGAAATTCAGAAAGGATACCATTAAGTCctagagaaagaagaaaagcaatTCGGCTGTCCTGCCCAGTGCAAAGTTTCAGTGCTCGATTTGCAGTCATGGGTCAAGTCTTTTCTGACAGCACATGAACAGAAATTGTTCTGAGATTaagatgtaaaatattaaatttttaaaaaatatttactgaaaACGTGAAATTTTCCCACCTTATatgtaaaacagaaatatgtgtggcagcctgggaaaacctgtcagatgtcactgtggctgaataaaactgataaataaataatatttaaaatgcaaatgtacagtaaaggaataaaataattgttatatgcagtttttgttaaaaataccAAACAATGCCAGCAAGTCATGACATCATGTTTCTAATCATGTTTGATACTACATTACCTTGTCCATCTTGATGTGCCTGAGATAGCCAGCAAGCTAACTAGTTAGAGTACAATGGAGTAAATACAGTTTTTGAAGAGAAAATGACCAGAAGCTGTACAGCCCGAAGAACCACCACAGAAAAGCTCCACTGCTAGTAAAATTAGCAAATATGACCCAGCACACACAAAATATGGTTTCACTTCAGCCAGCTAAAATGGCAATGGAGACACTCACGAACAAGGCTTTAAAGCCATCTAAACTTGAGAGACACTTAAAAcaaagtgtctttttttaaatgcaaattggAAAGTCATTTAGAAATCAAGCCACTATTACTGAAAGAGCATTGAAAGCATCATTTTTTTAGCCTCATACCACATTGCTCGAGCTTGAGAattgctcatttatgcagttattcaatcagccaatcaagatGCGATCgaagtatagactttcagctttattttaagaggttccacaaaaatatggcatttaccatttaggaattacaggaAAGCCACATTATACTTTGCCGGAAAACATCTAAacaaaagcctcccatgttctggaataagattctttggactgatgaaaccataTATACCACATcttgtgtcaaacatggtggaggcagtgttatgg

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302785 lncRNA upstream 50375 15949213 ~ 15949589 (+) True G255798
TU302766 lncRNA upstream 118099 15881386 ~ 15881865 (+) True G255780
XR_003403187.2 lncRNA upstream 174512 15823289 ~ 15825452 (+) True LOC113530859
TU302647 lncRNA upstream 174580 15823288 ~ 15825384 (+) False LOC113530859
TU302599 lncRNA upstream 341822 15657777 ~ 15658142 (+) True G255650
TU302796 lncRNA downstream 8317 16043155 ~ 16048021 (+) True G255809
TU302797 lncRNA downstream 13724 16048562 ~ 16052355 (+) True LOC117599274
XR_004579732.1 lncRNA downstream 14384 16049222 ~ 16052382 (+) False LOC117599274
TU302802 lncRNA downstream 143299 16178137 ~ 16181020 (+) True G255815
TU302907 lncRNA downstream 197175 16232013 ~ 16309562 (+) False spo11
XM_026921436.2 mRNA upstream 56961 15895643 ~ 15943003 (+) True prpf6
XM_026920719.1 mRNA upstream 459234 15519342 ~ 15540730 (+) True LOC113530581
XM_026920175.2 mRNA upstream 594317 15400888 ~ 15405647 (+) True naa10
XM_034311955.1 mRNA downstream 24474 16059312 ~ 16173060 (+) True baz2a
XM_026920761.2 mRNA downstream 24474 16059312 ~ 16171317 (+) False baz2a
XM_034311688.1 mRNA downstream 175252 16210090 ~ 16216697 (+) True LOC113530889
XM_034311689.1 mRNA downstream 175812 16210650 ~ 16216697 (+) False LOC113530889
XM_026920414.2 mRNA downstream 197215 16232053 ~ 16326614 (+) True spo11
TU302132 other upstream 832296 15117112 ~ 15167668 (+) False rps21
TU302131 other upstream 879752 15117112 ~ 15120212 (+) True rps21
TU301848 other upstream 1326012 14669804 ~ 14673952 (+) False G254991
TU301849 other upstream 1326012 14669804 ~ 14673952 (+) False G254991
TU301463 other upstream 1927748 14070269 ~ 14072216 (+) False wfdc2
XR_004579698.1 other downstream 175812 16210650 ~ 16229406 (+) False LOC113530889
XR_003403143.2 other downstream 328711 16363549 ~ 16395000 (+) False LOC113530371
TU302910 other downstream 338404 16373242 ~ 16396212 (+) False LOC113530371
TU303060 other downstream 473187 16508025 ~ 16508380 (+) True G256046
XR_004579712.1 other downstream 1036298 17071136 ~ 17120941 (+) False itga5

Expression Profile