RNA id: XM_026920753.2


Basic Information

Item Value
RNA id XM_026920753.2
length 5396
RNA type mRNA
GC content 0.44
exon number 7
gene id klhl21
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19849660 ~ 19863081 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTGTAAGCGGCGGAGTGTCCAATGAGCGGCCGTGTGGGGCGCGTGTGATCCGGATACTTAGGGGAAATATGGCGCTGAGATGAAGGAGGAAAAGACGAACGCGGTGTTAAAGTTTTCCGTAAGGAACGAAGGATCAgtgctgaagaaagaaaaatctgaGCCGAGAGGCGACTGACGAAAAAGCGCCGTGGTTATTTCGATGACAAGAGTGTTTTGAATCCAGTCCCAACAAGAGACTGTTTATCAGACAATTGTGCTGTGATGGAGAAGCCAGTCTTACAGACGCAGCATTCTATGCTGCCATTCTTCGATACAGCCCATGCTGTCAACCTGCTGCGCGGCATTCACGAGCTGCGTGCTGAGCGCAAGTTTTTCGATGTGACGCTATGCGCCGAGGGAAAGGAGTTCCACTGCCACCGAACAGTTCTGGCCGCTGCCAGTACCTACTTCCGCGCTATGTTTGCTGGTACGCTCCGTGAGAGCGCTATGGACAGAGTGGCACTACACGAGGTCTCGGCTGAGCTGCTCGGCCTTCTTGTAGACTTCTGCTATACGGGTCGTGTGACAGTCACATGTGACAACGTGGATGTGCTGCTTAAGGCGGCTGACCTCTTTCAGTTCCCGTCAGTCAAGGCGGCATGCTGCGCTTTCCTGGAGCAGCGCCTTGATGTCTCCAATTGCCTGGAGATCCAGGACTTTGCAGAGGCGTACGCCTGCAGTGAGCTGGCCACTAGTGCCCGGCGCTTTGCACTCAACAACATAATGGAACTGGCCAAGGGCCAGGAGTTTGAGCGTCTGCCCTGGAAACGCTTGCTGGAACTAGTGTCAGACGACGCGTTACGTGTGGACAAGGAGGAAACAGCTTACCAGATGGCGGCACGCTGGGTTAAGGCTGACCCACGGAGACGGCTCCAGTACTGGCCTGAGCTCCTGCAGCAGGTACGCTTACCCTTCGTTCGTCGCTTCTTCCTGCTTGCCCGCGTTGAGAGCGACCCCCTCGTCTATCTGACACCAGAGTGTCTGCGCCTGGTGGGCGAGGCGCGCAGCTTCCAGTCGGGAGAGTATGACCGACATGACCGTCCATGCCAGCGCATGCGCCCTCGTCCTTCTACCGGTCTCGCTGAGATCCTGGTCGTGGTGGGAGGTTGTGACCAAGACTGTGACGAACTCGTGACCGTCGACTGCTTCAACCCACAGACAGGCCAGTGGAGATACCTGGCTGAGTTTCCTGACCATCTTGGAGGAGGTTACAGTATAGCAGCACTAGGCAATGATATGTATGTCACAGGCGGCTCTGATGGTTCACGCCTTTACGATGGCGTGTGGCGCTACAACTCCAGCGTGAACGAGTGGACCGAGGTGTCGCCCATGCTTAAAGCACGCGAGTACCACAGCTCCTGTGTGCTGAAGGGCCAGCTGTACGTGGTGGCCTCGGACAGCACGCGCTACGACCACGCGCTGGACTGTTGGGAGCCACTGGCACCCATGCTGCACCCCATGGATAACTGCTCAACAACAGCATGCGGCGGGCGTCTCTATGCCACCGGCTCACTCACTGGTGACGATGCCATGGCCATCCAGTGCTACGATGCCGACACTAACCGCTGGAGCCTGGTCAACTGCGGCCAGCTGCCTCCCTGGTCCTTCGCCCCCAAATCAGTGACTCTCAATGGTTTCATCTACTTTGTGAGGGATGACTCTGCAGAAATTGACATCTATGATCCACAGAAGAACGAATGGGACAAGATTAGCCCAATGAACCAAGTACACGTGGGTGGCAGCGTGGCGGTTCTGGGAGGCCGACTGTATGTGTCTGGTGGCTATGACAACACGTTTGAGCTGTCTGACGTGGTGGAGGTGTACGACCCCGGCGCTCGCTCATGGAGCCTGGCCGGCCGTCTCCCCCAGCCCACCTTCTGGCATGGCAGTGTCAGTATCTTCCGCCAGTTCATGCCCCTCGTGCCCAGTACGTTTGAGCCGGTTCGAATCCCTGAGGCAGACAACATCCACCTGCACCGCCACCATCGCCACCACCAGGCTCTTCAAGAGCTCAACAACGAGCTTAACCAGAACCACCGCAATCGGGAGGTGAACCCGGCACGCTGATGTTACTGTTGAACTCAACACTAAATACGCACTTTACCACTTATTCACCTCAACTGGAGAGCGAGGAACATGAATGGACAGTTCCATATTCTCTGCTTGTTTGCCTCTCTAAATTCTCATTACCGTTACGCTTGGGCCAGCTGTGTCTGGGATTTGTGCTTACACCAGCATAATTCTCGCCACACTACTACAAATATcagtattaaaatgaaatgaaacacacagaaCTGCATGTTGCACACTAgccaaaaataatatttcaaaaactCTATTAGTAATTAGATAAAAGCACCGTGAtgctttaatgaaaatataggtgttaaaaaaaaaacacacacatctgcattaCAAGCACTTGATCTGAGACTTTAGTACAGTTTTTGATTTGAAGTCACGTATTTTCAATTCTGTGACTTCATATATCAAGACACCTTGCTGGAAAAGTGCTAAAATTAGCtaacaaatattaagtgttaatatttatttagtaacaAGTCAGCCAATATGCAGAAGCCATGTgggtaaaagtaaaagtacaagcTGGAGAAGAACTGGTTGCAATCACCATTAGCAGTAAAAACCTGAAGTAATCGTTTTCTGAGCCCCAAATCATCCCGCAGAATGCATCAAACTGCATTTCAGTGAACAGGCTACAAATTCTCAGCCTCAGTGCATTTTAGGCTACATGGTTAATGAtaaaaaacagtaaatgaaaaaataatacatatgtgcatcatattacactatttaaagACATACAGTACCAATTCATAAagtacacacatgcattcaACCTGGCGGATGCAGCTCAGCTGAAATTCCTGATTCTTGAACTGAGAACGTGCAGCAtagaagctcatgtccatcaccAGAGCTCCCCTTAAAGCTCAATGTGTGGCTTTTCTTAGATGGAGGATGCTATGTTTACAGCAGCCTCTAGgaggctttttttgtttgtttgtttgtttgttctttttttattataagaGATGCAGTTGACTTTAGATTTTGGTTTGATCTAGTCTGAAATGTGTTGCAGACTAACAAAGTCCATTTAGCCTCCTTTCTTTACCTTACCGTCCTGACTAGTGGATAGCTTCCCACACCGGCGACTAGTGAATGAATCAGTTCACTAATCTATGCAACCCCTAGTGCTTAatagttggtatgaggtgtttgtggtgaagTTTGTTTTTTGCTAATCTCCATTTTACATCTCATCTATCCAAAGGATATTATTCCAGAAATGCTGAGGTTTGTTCAAATGTAGCAGTCATTGTAGTCAGAGgatgttcttttcttcttttctaccCTTCCATAAAAGCAAGATAGGATCAGCATTTTTCAGATATTAAGAGTTATGAACTTCAACATCAACTAAGGCCTGAAGATACCTAGATGTTGCTCTTGGGTTCTTTGTGATTTCTTTGATCAAACAGTCTTGACCTTGGCATGAATTTGCTGAAACCCACTCctgaaaaaaaagtcttgaatGTTCTCAGTTTGTTAATAATTCTTCTTAATATAGGGTAGATTGCTATATATAGAAGATTCCCAGATTGCTAAACAGCAAGCTGCTTGAATCTTTTTTTCATGGCATGGTGTGAACATAAGTTTACATGATCTAGACCATCAGACTGTCAAAAGTTTTGCTTTtatacacagcaaaatccctagtgttgaattaacacctactgtAGTGTTAATTCAACTCTGGCGATTTTGCTGTGTAGACGTGGCCAAACCTCCCGATGATCAGCTAATCAGCTGATTTTGATGATTAGCAgttttatcttattattattctcgcAGATTACCATAACTTACGTGGACACATATAGAGGGTActtatttttgaacattttactATTGTACTAATGGATGTTGGCTGACGTATACCAAATTTTCAATATGATTGTCCAAAAAAATTCTGTAGCCCTACAACATATTTCAGTGTATATTGCAAATAAGGCTTGGATAAtagcattatattacattatcatAACCTGTTCTGCAGTGTAGACAAAATAAGGTTGTCCTAATGTGCTAATACAGAGAATGCTACAGGTCTCTGGTTGTATTATTTCGATTTTTCTGTTCACTGGCATGATAAATAtctgtcctttccccttcagtgagtTAGCTTTTCTCTGTGTGAATTTTATTAGCGTTTGGTCAGAGCACCGCTTTAactaaaaaagcagaaaagtaaaGATCTTCTGTATCACTGTAGCAAGgagtcaaaaatcataaatgctataGCTAAAccgtaaatgttggcacctctgttaCAATTAGTATAGTTTTTCATATGCCTTAaatttgttttactttgttattattaataaggacatgtattataaatacaaaaatctttacaaagaaaaagaaaatccacaCCTTGATGTACAAACACTACTCTGGCGGGAATCATGTCGGCTATGTTCCCCCCCcccacacgcgcacacacacacacacacacacacactgacctaaGCCTCGGTACTGGAGACGTGTACATTTGCATTGCATGTTACTCCGCATACAAGGAGACGGGTTGGAGACAGGGTAAAGTCTCGTTATGAAGTAGTGCCTAATGATCCATATTTTGGGAGCTGACAATAGACAAAGGAGTCTGCCAAAagcaagtgttttttttgttttttttttcttctttccataATCCAAAACCTTGCGACAAACATCATGACTACACACTTTCCAAAAGATGTAGGGTTGGATCGctttgttaatatatatatagatatataccaAATTTGGATTGcactgtggagaaaaaaaaattacatccaCTATTTTTCAGATCTGTTTCTCATCCTACTTTCTACCTGGAAATACCAGACAATCTATAATGCATGAATTCCTCACGTCTTTTGTGAATGTCTCAATCATAACAGTTTTCATATTTTGATAGGAAGTTTATTTATGAATGTgtagatgtttgtttttaatgaaggTGTGAAACAATAGATAAAGATGCTGTGTTTTCACTATTTGATTTTCTCTACAGCTTTCACTATGCTGTTAAATAACTGGAAGTAGTAATTCAGTAATCTCTTGTCAAGCAgacattgtgtgtttgttattactaataattatgattatgtACTCTATGCAGAAACGGTACTTGTAACTTTTtgttactttatttttcttacatTGTTTAGTTTTGGTTTGTGGCCAAAATCATTTTTACCGTGCAGGCCTTGTGTTTGGTTTGTGTAGTGATGTCTGTAAGTGTGATGAAGGAATAAACTGCAGGCAGGA

Function

GO:

id name namespace
GO:0035853 chromosome passenger complex localization to spindle midzone biological_process
GO:0016567 protein ubiquitination biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0005827 polar microtubule cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10458 KLHL21; kelch-like protein 21

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305265 lncRNA downstream 234981 19611920 ~ 19614679 (-) True G257880
TU305254 lncRNA downstream 258530 19586328 ~ 19591130 (-) True G257870
TU305250 lncRNA downstream 267978 19580212 ~ 19581682 (-) True G257866
TU305220 lncRNA downstream 369928 19479524 ~ 19479732 (-) True G257838
TU305201 lncRNA downstream 384324 19464054 ~ 19465336 (-) True G257819
XR_003403186.2 lncRNA upstream 188340 20051421 ~ 20057906 (-) True LOC113530857
TU305425 lncRNA upstream 265824 20128905 ~ 20129112 (-) True G257980
TU305460 lncRNA upstream 280944 20144025 ~ 20144249 (-) True G258003
XR_003403139.2 lncRNA upstream 451281 20314362 ~ 20331611 (-) True LOC113530344
TU305690 lncRNA upstream 500974 20364055 ~ 20373180 (-) True LOC117599243
XM_026920863.2 mRNA downstream 8537 19822267 ~ 19841123 (-) False nol9
XM_026920859.2 mRNA downstream 9033 19822267 ~ 19840627 (-) False nol9
XM_026920862.2 mRNA downstream 9041 19822267 ~ 19840619 (-) False nol9
XM_026920857.2 mRNA downstream 9053 19822267 ~ 19840607 (-) False nol9
XM_026920860.2 mRNA downstream 9053 19822267 ~ 19840607 (-) True nol9
XM_026920112.2 mRNA upstream 105145 19968226 ~ 19977788 (-) True olfml3a
XM_026920137.2 mRNA upstream 145500 20008581 ~ 20033502 (-) True c1qtnf12
XM_026921101.2 mRNA upstream 182224 20045305 ~ 20051294 (-) True LOC113530786
XM_026920675.2 mRNA upstream 210779 20073860 ~ 20098987 (-) False nckap5l
XM_026920676.2 mRNA upstream 210779 20073860 ~ 20098987 (-) True nckap5l
TU305224 other downstream 228100 19615527 ~ 19621560 (-) False magi3a
XR_004579690.1 other downstream 462619 19370687 ~ 19387041 (-) False LOC113530570
trnak-uuu_17 other downstream 721124 19128464 ~ 19128536 (-) True trnak-uuu_17
XR_004579689.1 other downstream 785078 18937910 ~ 19064582 (-) False lrp1ab
TU304189 other downstream 1336403 18509155 ~ 18513257 (-) False LOC113530839
XR_003403201.2 other upstream 237918 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other upstream 240693 20103774 ~ 20103911 (-) True LOC113530994
XR_004579656.1 other upstream 247382 20110463 ~ 20119949 (-) False mlh3
TU305550 other upstream 389089 20252170 ~ 20271907 (-) True G258077
TU305957 other upstream 967747 20830828 ~ 20867958 (-) False LOC117599256

Expression Profile