RNA id: XM_026920755.2


Basic Information

Item Value
RNA id XM_026920755.2
length 4366
RNA type mRNA
GC content 0.42
exon number 11
gene id spryd3
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20613668 ~ 20658178 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttccctctcagtgGCCTCTGATGTAAACAGGAAGAGTCTTAGACAAATTTCTGTTGAGTTTTTCAGATGACTAGCGTGCTAGCTAATGGAGTTTGTGGCTAGAATTAAACACAAGGGGCCTTAACATCCCATAACATTACCTCCAAATGTGAGTAAGATGGATGACATCAATTTACACTACAGGATCCTCAACTGGAGGCGCAGGATCAGAGAAATAAGGGAAGTGCGAGCTGTACGCTATCAGGAGCGCTACAAACGCATGCTGAAGGATGGAGACACTTTGAGTTACCAAGGGAACTCTGATGAAGTTGGCTGCTATGTGGCTCCACGGCCTTTATCAAAAGGAAACTGTTACTTTGAGGTGACTATAATGGACACGGGTGTCAGAGGGACGATTGCTGTGGGTCTGGTTCCTCAGTTCTACAAGCTTGATCATCAGCCCGGTTGGCTGCCTCACTCAATCGCTTACCATGCCGATGATGGGAAACTGTATAATGGCAACCCTGTCGGCCAGCAGTTCGGCCCCAAGTGCAACCGTGGCGATCGGATAGGCTGCGGGATCTACGCAGACACTTTCGACGCCGGACTCACCACTGTGTTTTTCACCAAGAACGGCAAAGAGGTGGGCTCAGTGGTGGTGCCTGTGGCTCCGGGTGGCCTTTTCCCTGCCATCGGCATGCACTCTCTGGGGGAGGAGGTGCGTCTGAACCTGCAGGCCGAGTGGGGCACGGAGGAGGAGGACAGCATCATGATGGTGGACAGCCACGAGGATGAATGGGGACGCCTGTATGACGTCAGAGTCAGCGGAACGCTGCTGGAGTATGTAGGAAAGGGAAAGAGCATCATGGACGTGGGACTCGCTCAGGCTCGCCAGCCGCTCTGCACACGGAGCCACTACTTCGAGGTGGAGATTGTGGACCCTGGAGAGAAGTGCTACATTGCATTGGGCCTCGCTCGAAGAGACTACCCTAAGAACAGACATCCAGGCTGGAGCCGAGGCTCAGTAGCATATCATGCAGATGATGGGAAGATTTTCCATGGCAGTGGAGTTGGAGATCCATTTGGCCCACGTTGCTTTGAAGGGGACATCATGGGCTGTGGGATCATGTTCCCTCGTGACTATGAAGATGAGGCTGATGATGGAGAGGACATGGCAGAGAATCCCAAGCAAAACCGCGTTCAGAACGTACTGTACCTAAacgatgaggatgaggaggatgagggaGATGACGCAGAGCAAGAGCAGGAAGGCAGGAAGGTTATGGTGTTCTTCACCCGCAATGGGAAGatcattgggaggagggaggTGGTGGTGCCGGCTGGAGGATTCTACCCCACCGTCGGCATGCTGAGCAGTGGAGAGAAGGTGAAGGTGGATCTCCACCCTCTCAGCGGCTGATGGCCAGAGACTACAACTAATCCCATGTCGACAGTTCAACTGTGAGCCTGTAGCAACATGAACGGTTTAAAAGGGAATCAGGGAACATTAAGTCTGCAAACTGCtctaatgtcattttttttcttattgatgGGTGCACACTGTGGAAGTAGGTGGAAGTTTTTCATATTAATTGCCATGGAACCAAAAACAGCAGTGCATGATTTTCACTCACGCTGGAATAACGATGCATATCTTACTGTCTTTAGGCCTTTTTGTCCTTCAGGGGCCGAGCTGTATTCTCTTTATACGGTTTTGGCGATGGTTCCATGTGTAACCATGTTGAgcagctgtattcagagttgagcagagtgtgtgtggtaagaaattaatactgaaatactgaaatactgaaatactgcaTACACTCATATTATTATGTGGACTTAAGGGCTATATAGACAGTTACATTATTATGTGTTAAATAGCAGCTATTCACACTTTTTGTACCAAAGGGCTTTTCTCTTAGCTGTAAGTCCAGCTACACTGTATGACAATTTTTTGTCAGTGATATGATATTggcaatataatatattatatctaGTAATAGTAATTAGAAGAACAAACAACCACAGAATGTAACTTGTGGCCAATATTAGATGTTTAAATGTGACCTCGAAAAATAAAGAATcatataaatacagatttattcCCAAATTACAAATATTCAGTAAAATACTTACTCAaatcaggggtggacaaattataaatcataaattcattagctagctctTCGGGCAAGTAAAATCTCTTAAAGTGCTGCCCAGTACCAATTTTAACCGACAAGGCTAAAAAGTGGCAAGCTACATAGCTAGTTAAGTGAATTAATACAGAGACAAATgagtataaaattataaaataatggtTCAGCTATTAGCCATGATGTTTTCTTCACATCGCACATAAAAACCCttcgttcacactagcaagagACAAGTCACTTGTATCGCTTGTAGtgtgtctcttgtgggcgtgcaCTCTCTAGCGTGCACTCATGAGGATGGAACTGAAGAAAAGTCGGACCAGACCGAGTGCATCATTGAGtggattggtccgaggaatcatttgaATTTGGATTCGTCGCTTTGCAGTGTCGTATCTAATTTGCATAGGATTAAGAAAATCTCAGTTCAGTTATCAACTGTTATGCCATCACTTTGTCGATTGCTGTTGTCGCTGAAATTGTGGCTCTATGTCATGTATATTCATAGAAAACAAATGATCGCCGGTAACTTTCTAGTGTGAATGCAAGGGTATGCCGCACTTAACTCGGTTTTGTCACACATATGTGTCCACATACCTGCGTGTATCAGTTTTCCATGCACAATAATTAATTCGCCTAGTAAAATCCAATGTTCAtcgtgcagcaggtggtgggattcacCACGTGTAACTTGTGCTATAGTTACATCATCAAGGTGCGTCGTGAAGCATGTTTTgtctaaatataaatcaaagTAAAAGTCAATAGCAAGTAGGATTTAGGAGAAAACAGCTAGCCTACAGAGCCTACTTGTCCTTTGTGCCCAAACTACTCACTAGTCCACCCctggaaattatttttatattatttcattcTTTACAATATTagtaaagatttttattttaaagataaatgtACATCCCAGCGCATTTTCCTCCAGAAAATTATGTTCCCTGAATTAGCCTAATCTCAACAGTATCTAAATTACACAATAAGGAATCAGTCATATACCTCCAAgccattcatcatcatctttaccTTCATGAACAGAGGCATGTATGCAGAAGGAGAAGTGTTTTTTAGGCCCCCACTGGAGGAGTTGTCACTTACAGATGAGCAGTGTTTTAAAGGCTATCGATCTGTGATGCTGACCTGAAACAACAAATTGACAGCTGAGCGTCTGATTGTTTCAGAAGGCGTCTGGGGGAAATTCTCCGAGTCTCCTTGGTGTCCATCATTTTAAACAGAGGCATAATGTTCAGAAAGTTTCCCATTAAGCAGCGGAGAAGGAGAGCTTGTGAATGCGACTATCAAGACAATCAACAACAATATATTCAGCTTCTATTAGATtacatatttcttatttttatatcatcatatcagtcTAACCTTCTAactttaatttgaaaaaaaaaaaattacatttacattgaaTTGACAGCAAATTTCACTTATTAAATGTAAACTGTTTATTTCTTATCACCTGAAAATTGTGCCAACGCAggtcattttaatcatttaaataatcgAGATCATTATCTAAATACGGTTAACTATTTTTCgtacatatatatttgttttatgagCTTAAGTGGCCCGCTTaagtcaccaactctgaatacagcgaAACTTAAATGATTTCAATTGACTAACGAGAGTTGTATGAAGCTGATTTTCTGATGCATAGATCATatgtagctatatatatatatttttaaaaagcttgtatataatgtacagttatatatatactatatatatatatcaccgGCTGTACTGATGCCACAGCAAGTAACAAAGAATCACTTCAGGAAATagctgaatgaatgactgaataaaggaatgaatgaaaggaGTGAATGGACAGAGAATGGCATTTCAGTTTATAAACAGCATGCATTCGAGGGGCAGTCGCGTCCCCGAGCATCATCGTCACGGTCCTGCACCTTCCCCTTTCCCTCACAGTCCTAAAGCTGGTGACATTTCtactttgtcatgtttttgttttgtttttttttcctgatcaaCTGACATTCAGAAAGAAAGTGCCACTTTGTTATCGCTGCTTCGTGGAAATGAGGCCTTGGGCAGGAGCAGAGAAATGTCACGAGGTAATTGCGTCCACAGCAGAGGTCAGACAGTTTGCAGTGAcgtatgcttttctgagatgctAAAtgcaatctgaaaaaaaaaatctagaaataaaagaggtttatttctttata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305785 lncRNA downstream 2609 20610311 ~ 20611059 (-) True G258268
TU305773 lncRNA downstream 20507 20589758 ~ 20593161 (-) True G258258
TU305751 lncRNA downstream 90023 20522552 ~ 20523645 (-) True G258242
TU305676 lncRNA downstream 93465 20518425 ~ 20520203 (-) False nfe2
TU305681 lncRNA downstream 96955 20511166 ~ 20516713 (-) True G258189
TU305953 lncRNA upstream 117971 20776149 ~ 20776709 (-) True G258411
TU305972 lncRNA upstream 225621 20883799 ~ 20884095 (-) True G258424
TU305980 lncRNA upstream 243100 20901278 ~ 20902757 (-) True G258427
TU305993 lncRNA upstream 295448 20953626 ~ 20953852 (-) True G258437
TU305999 lncRNA upstream 315219 20973397 ~ 20976261 (-) True camk2n1b
XM_026920972.2 mRNA downstream 27244 20580607 ~ 20586424 (-) True zgc:174906
XM_026920876.2 mRNA downstream 35734 20567789 ~ 20577934 (-) True csad
XM_026921339.2 mRNA downstream 47071 20560115 ~ 20566597 (-) False znf740b
XM_034312135.1 mRNA downstream 47072 20560115 ~ 20566596 (-) False znf740b
XM_026921338.2 mRNA downstream 47073 20557604 ~ 20566595 (-) True znf740b
XM_026920372.2 mRNA upstream 33628 20691806 ~ 20698192 (-) False LOC113530420
XM_026920370.2 mRNA upstream 33628 20691806 ~ 20698192 (-) True LOC113530420
XM_026920374.2 mRNA upstream 33628 20691806 ~ 20697647 (-) False LOC113530420
XM_026920373.2 mRNA upstream 33628 20691806 ~ 20696937 (-) False LOC113530420
XM_026920368.2 mRNA upstream 40945 20699123 ~ 20718020 (-) False agap2
TU305550 other downstream 341761 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 493719 20110463 ~ 20119949 (-) False mlh3
XR_003403201.2 other downstream 504458 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other downstream 509757 20103774 ~ 20103911 (-) True LOC113530994
TU305224 other downstream 992108 19615527 ~ 19621560 (-) False magi3a
TU305957 other upstream 172650 20830828 ~ 20867958 (-) False LOC117599256
TU306159 other upstream 510808 21168986 ~ 21169698 (-) True G258580
trnaq-uug_7 other upstream 696448 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579748.1 other upstream 1270997 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 1787852 22446030 ~ 22449427 (-) True G259306

Expression Profile