RNA id: XM_026920771.2


Basic Information

Item Value
RNA id XM_026920771.2
length 6095
RNA type mRNA
GC content 0.51
exon number 23
gene id tasorb
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11090187 ~ 11103588 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACTGAGGCCTCGGGTTTGGCCTTTGGGTGGCGCTCGGCTACTTGTAAACAGAGTGACGCCAGAGTTTTCGCAGCGCAGGGAAGCCGCACGTCAGAGGCATAATGGCGGAGGCTGGTTGAGAAGGAGAATTACTCCGTGAAGCGGCGCTGAAACCAACTTCATCGCCAGTCGACGAAGTGATCGGTGGCCAAAATGGCCTGCAATCTGAACGAAGACAGAAAATACGACCGGGACGGCATCAAGACCAGCGGCTTATGTCTGGACGGCAGCGAGAGCCAGGAACAATTGTCAGCCTCTACCACGACTACATCCAAGCAAAATGGCGATCAAGCTGGATGCGAAGACGAGCAAATGTCTGAACAAGATGCTTGTGAGCGGCGGAAGAGCGGGCTGTCAGATTTGAAGAACTGCAGCACTTCACCGTCGGGGCTGCACAGATCAGCCGAGGAGTGGTCGCGGAAGACTTTCCAAATCCCGCGGAAGATTAAGGAGCGCAAAGGTCTTCTCCAGCAGTTAGTGCCAGAATCGTGGGAGTTTGAGGAGCTTCTCAAGCTCCTGTCTTCCTCATACCTGGATGCTTCATCTCGAGGAGCTTTCACCTACACTAAAGCTTGTCTCATTCACAATGAGCTCCTGGAGAAAGAGTACATTGAGAAGAAAAGGGAACTCAAGCAAGCTGGGCGGACAGACGCTGAGCTTACTGACTCCTACGCTTTTCTGCTGCCTGATGCAAAAAAGACTCGCTGGATCTGTGAAAAGGGCCTTTCAGTGGGACATGCACGTATTAACAATTTGGGAAATCCCGTTAAAGgTGTTTACCTTTCAAAATATTCAGATTTATTGCAAATAAATCCGTTTGAAGCAGGTGCTTCTGGGGACATAATCATATTTAAAGTCATGAAGgGTAGATTAAAGAGCATATTTGAAAATACGCCCAAGAATAATCTGGAACCTGCGCCTAAGTTTGATTGCCACATGCACAAAAATGCCAGCAAAGTCACCTCATTATTGTCGTATAGGGCCTTTGAGCTCACTCAGCAATACTTTTATGAGTTTGCGTTTGAGGAGCTAAGGTCACGGCCCAGACACGTGTGTCCCTATGCTGTGGTGTCCTTTCAGTACAAAGGCAAGGAGTCGGCCACAGCTGCTCACAGATTAAGCAGTGGTGTGTATGAAGGACATAGAGGATGGCGAAGGTATACAGTGTGGAGTGGCACATTAGTGAATAGGGGAGAAGAGCTGTATCACGTGTGCATCCGGTCACCCAATCTCCCCTTTCTGCCCTTCAAACTTCCTGACAAAATTGACATAAGTATGGCAATGCACCTTGATCAAGTGAAGAGGAAAATTCCCTCTACACTGCTTTCATGGGATGCATATAATGGAACACAAGAGgCAATGAAATGTGGGCTGTACTGCAGCCTGTTTGATGTCATGGCTAAGACCAAGCAGGGAAACTGCCTGTCTGGCCTGCTACACAAAatggagaaggaaaaaatgGTTCTTGTGAAGCCACTGGCAGAAAGAGGCTTTCTTCTCCTTCTATCATCATCTCACCTGCACAGTTCTAATGAGAAGCGAGGGAGAAGCGACAGAGGATTACAagcactttttgtttttcaagaaTCAAGAATCACAGGCAGGTTAATGTCCAAGCATGCTGGCCTACACGTGGACTCTCTGGTTTCATTAGAGCCCAAAGACCCAATCACTGAGCACCTAGAGACCTTTGCTCCTGCCCTGCACCATGCTTTCTATAAACTGCGCTCCAATCCACCCAAAGATCTGGCAAGTGCAGTGAAAAACCAGGCTCTGGACTATCTGAGTTTAAGGGAACATGGCTCAGGACGGCCCTTCTCTGTGCCTGAGTACAGGTCAAGCTTGGATGAGCGACCTGGGCCATACCCACCACAGCGGCCCAAGAGCTTGGACTCAGTGCTGAATACATATGTCCACGCACCTGCGAACTTCCAACTGGCCATAGCATGCCTACAGCAGGACATGGAGGACAGTGGTCCTGCCATGGTTGACGAATATAGTCCTGTGTCTGACTGGAGTGGCTCGGGCAGCACCAGGACCGGACTGGCGCAATCTAATGGTGGTGGTGCTCAGAAGCCCCAGGGCGAGTATGACAAAGACAAGATGGAGAAGCTGCTGAAACTGATCCAACTGCACAAACGGGCACTGGGCAAGGAGGATGGAGGCATGCAGGAGCGCAGTGAGGACTGGGAGCCTGCCGGGCACAAGCGGAGACCTGAGGGTGACATCTCAACCGGAGTCAGCAAGTACCTGAAGACAGATGTCTTGAGCAATGGAGAGCTGGGGAGAGTTCCTCAGGGCGAAACGTCTATGTCTCTGTCGGCGGTGATGGACAGCATGGGTATGTGTGACACGGACTTGCGTGAGCACGTTAGCCATACCACACCCATCCAGGACACGCAGACGCTGCTTAAGTTCTTCATCACTGCTCTGAAGAAGGTGTCTCAAAGCTCTGCTACTGCTGCTTCTGCCACCACTACACATCTTATGCTGCCTACACAACTCCAGGAGAGCCTGGTACCTGAGCGGACATGCGAGCCAGCTGAACCCACCGCCCACTATGAGCGCAACCTGCGAGCcagacacacagaggatgaGCAGGTCTCAGTGGATTATCTGGAGGATCAGATGGCATGCAGTATTGGCAGTATGGACTTGTGCAGTCCGTCCTCCGGCTTCGAGCAACAGGTGCAGCTCCCTGCTGAAGCTAGTCATAATCGATTACAGTGGAGAACAACCTCTACAGTCCCGGTTACTGCGGATGAGGCAGGGACATCGGGTACATCAGTGAAGGACAGATCAGTACCGTCAGCGGCGCAAACATTAGACTCCATCCTGGACCAGGAGTTTCAGTCTCTCTGCACAGGCATCCAGGAGCTGATGGAAAGGCAGCAGATATTTTACGTTTCCCAGCCTACACTTCCTCGACATGAGGCTACACCCAGCAGACTGGAATCCACCTTCTCTCCGTATGTCTCGAAATACATCTCACCTCTGCCGGTACAGGGTTACATCAGCACGCTGTGCGAAAAGATGAACCACATGATTAGCTCACCTGCTGCTCCTCTGTACCCTGTTGCTCCCAATGATGCGGTTCAACCTGCtcttgctcctcctcctccacctgttGCTCCTCTTTCTGCTGCACTTACTGCATCTCCTACTGTTACTCCTGCTGCTGTCCTCCCTGCCAAACAGTCAGCTTCGAAGGCTAAATCACAGGAGTCCTTACACAAGGCAGCCAGCAAGCCACAAACACCTGTGTCAACCCCGACACCGACTGCTACCCCTACTCCACCTCCTCCTGCCCCCAAGAAACAGCCCTCCCCTGCCAGAAAATCTCACCCAGGGAAAAAGACAGATGCAAAGCTTCCAGATGTTGCAGACAGTCCCAAATGCATGCCTATAGTAAGCACTGCTCTCCCACTGATACCTGAGGTGCCCCCTGAACCAGCCCAGATGGGTGCACCAGGAAATGACATGATTGGCCAGATCAAGCCAGATGTGCTGTGCACACTGATGGAGATCATGCAAATGAATGCAGTTAGGTTTTACATTCAGCGAGGAGATGAAGAGGAAAATGAACTCTGCACTGAGATTAAGGGTTACTTAGAAAACCTTGGCAACATTGAGTGCGATCCTCTGACATATCTGGAAAACAACTGTCAGCAGAAGTTTATGGTCATCATTCAGAATGAAGACATAGCTTCTCATGTTCACAagATTCCAGCGTTGGTGTCATTAAAGAAGTTGACGACAGTGTATTTTGCTGGCGTGGACAATCTAGATGATGTGAAAAATCGCACTTACAATGAGCTTTTTATGTCTGGAGGCTTAATCGTATCAGACGAGCTCATCCTGAACCCAGACTTCATCACCTTAGAGAGGCTTCAGGCATTCTTACAGTTCTTGGAGGAGCAGAGCATGCCATGGAAGTGGAAGGTTCACTGTAAGACTCAGAAGAAGCTGAAAGAGCTCAGCAGGTCAAACAGTGAAGCTCTGGATCTGCTAAATCTTCTGACAGCTTATCAAAAGAAGCACCTGGTGGAATTCTTGCCTTACCACGAGTGTGATGCTCCGTCACGGCAAGCTCCAGATCTGGACTGTCTGGTGAAGTTACAGGCTCAGCACACACAGCTCCGACACATCATCTTCCTCACAGagaagTCCCTTGACGCACCCAAGTTCTCTAGTAATGGGATCATCATAGCTAGCTTGAATGACCTCATGACAGACTTTGAGAGCCTGATAAGCAGGACTCGAGCTGAAGACTCCACCCTGCCCATTGTCCTGGGTCCAGGTGACAGCCACACAGAGCCGGATGCGTGCATGGACGAGGAGGACATGTCCCTAGACTCGGATGAGGATGCAACTGTGCAAGCGGAAGACAGGGCAGCGGAGAAGCAGACCACTCTACCTCTTCAACCCGTGAGTGAGGACACACTGCCCCCTCTCTCTGACCCACACAGAACAGACCTTCTGTCCTCTTGTCCTGTGGATTACAACGTTCTCAAGGCGGCCATCTCACACTATAAAGCTTCTAAGCAAGCTGGAACATCCATGGTTGAGGGGGAGGACAACTTGGTTAGTTTTGGTGTGAACCCTCACCAGAGCTACTTGTACCCCAACTCGGCACAGTGGAGCCCCTATTCCGGTTCTCCTGGCTATCATGTGAGCTCTGCCTATTCTTCACCTGCATGCTCAACTTCGCAAGGACAGGAGTACAGCCAAGTGAGCAGCATGAGTGTAACCCTGGCCAACACTGTCCCCCTGTCCCAACCTGCTAATCAGGCTAACCCCAACTCTTCTTGTGTGAACCCATCTGCTAACACTGCTCCCCCGGGCCTGTCCCAAACCTCCTGCAGCAAAGGGGACATAGATCCTGATGGCCTGTCCTGCCCTCAACCCTTGCCTCAGGCTCAGACTCAGTCTCTTGCTGAGGACAGTCAGTCATTTTTGCCTGGCTCTCAAGATAAACAGACTAAAGCCATGGAACCTCCTGTTCTCTGTTCCTCTTCCTCTGTACCTTGCACTTTGCCCAGCTACCCAGATACTCCCGTATTCCCTGGTCCCATACCCACACCCCCTGCACCACCAGTGTATAACTGGGCAGCCCCAACAGGGGCACAGAATAGCTATACACCAGGGGTGAGCACGGCACCTTTTGGGAAGAATGAAGGTGCAGCTTCAGCTGAAGGATTATGTATTGGGACTGGCGAAGGATTGACTCTTAATAATAAAGTTGATGGAAGCACGTCTGGCACAGCGCCTTCCTCTGTGCAGTTCCAGGACGGAGGGACTGAGAAGAGCAGCACATCGGGCAGTGTAATGCCCAACAATCAGGGCAGTAGGACATCAGTAAACTCTTGCACAGAGAGCCACAGAGGTGGCATGACACATGCCCGTGGCATGACTGGAGGGGGAATGCCTAGCAACCCCAGAGGGCTCCTACCCCGACCTGGAGCCACGATGCGTCCTGCGTGCCGAGGAGGGCCACACGGCCCAATCTCTCAAAGCGGGAACCGCATGTTCGGCCCCCGAGGGCCCATGCCAGGGCTTATGGACATGAGGCGTGGAGGCTTCAGAGGGAGAGGAGTGCCCCCCATGCCCATGAGATCCAGACCGGGCAGAGGGTCAATGTGGGGAGGAACGCACTGTAACCGGGGCTATGGTCCCCCAAAGGATTACTACTCGGACTACACTTACTAAAATGTTGGGAGCAGTACTTACAGACTACTGCCATACAGAATGTAAATATTCAACATGAAGAGCACATTtaaatttaaggaaaaaaaagaaaaaaattggtttTGTACCATTAGATCAACAAATCAGACCAAGATCGTGTCACTCAAAAATGCTCTTCTTTAATGAGTTGTTTGAAACCTTGTTCAGACCACTATATTTATATCGCCAAGAAATGTAATTGcctttcaatgttttttttgtgttctaaTTTTCAAAATGGTTTGTGAACAAGGGGCAAAACGcagacaatatttttttaaaaagaaaaaagtgaatcaCTCTTCATtttagctgctttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299459 lncRNA upstream 50758 11038218 ~ 11039431 (+) True G252966
TU299445 lncRNA upstream 90369 10998081 ~ 10999820 (+) True G252955
TU299384 lncRNA upstream 128547 10949669 ~ 10961642 (+) True G252903
TU299383 lncRNA upstream 137007 10949669 ~ 10953182 (+) False G252903
TU299371 lncRNA upstream 143276 10945080 ~ 10946913 (+) True G252893
TU299500 lncRNA downstream 551 11104139 ~ 11104527 (+) True G252996
TU299682 lncRNA downstream 141173 11244761 ~ 11245472 (+) True G253152
TU299681 lncRNA downstream 142310 11245898 ~ 11246862 (+) True G253151
TU299753 lncRNA downstream 267115 11370703 ~ 11372352 (+) True G253210
TU299755 lncRNA downstream 269407 11372995 ~ 11376620 (+) True G253212
XM_034312190.1 mRNA upstream 1561 11079277 ~ 11088628 (+) True asb14b
XM_034312191.1 mRNA upstream 1561 11079277 ~ 11088628 (+) False asb14b
XM_034312183.1 mRNA upstream 10915 11051523 ~ 11079274 (+) True dnah12
XM_034312184.1 mRNA upstream 14126 11051523 ~ 11076063 (+) False dnah12
XM_026921369.2 mRNA upstream 75534 11009781 ~ 11014655 (+) True ognb
XM_026921276.2 mRNA downstream 20356 11123944 ~ 11223630 (+) False LOC113530897
XM_026921274.2 mRNA downstream 20366 11123954 ~ 11223630 (+) True LOC113530897
XM_026921273.2 mRNA downstream 20853 11124441 ~ 11223630 (+) False LOC113530897
XM_026921275.2 mRNA downstream 20853 11124441 ~ 11223630 (+) False LOC113530897
XM_034312174.1 mRNA downstream 21612 11125200 ~ 11223630 (+) False LOC113530897
XR_003403205.1 other upstream 93446 10996609 ~ 10996743 (+) True LOC113530991
XR_004579720.1 other upstream 177656 10872029 ~ 10912533 (+) False atp2b3b
TU299368 other upstream 238844 10848851 ~ 10851345 (+) False b4galt3
XR_004579736.1 other upstream 750984 10292606 ~ 10339205 (+) False kcnab2b
TU297603 other upstream 2464327 8621005 ~ 8625862 (+) False LOC113530359
TU299671 other downstream 127841 11231429 ~ 11237362 (+) True oard1
trnah-gug_14 other downstream 156259 11259847 ~ 11259918 (+) True trnah-gug_14
trnaf-gaa_28 other downstream 164023 11267611 ~ 11267683 (+) True trnaf-gaa_28
XR_003403199.2 other downstream 289004 11392592 ~ 11415449 (+) False wu:fa11c10
XR_003403198.2 other downstream 296448 11400036 ~ 11415449 (+) False wu:fa11c10

Expression Profile