RNA id: XM_034311853.1


Basic Information

Item Value
RNA id XM_034311853.1
length 4306
RNA type mRNA
GC content 0.48
exon number 26
gene id uba1
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10480490 ~ 10496127 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTTTGTTCCGTGTGCTGAAGTGAAAGCTGAAACGCGATTAGTTAGACGGCGCAGGGAGAAGTGAGCACGGTGACTCGGCAGGATAGCGACGGCGGGACTTTCTCGCACTATCTCAgcgacagaaaaaaaagaaaaacggcGACATTGTGATGTCCAGCTCGCCGCTGTCCAAGAAGCGTCGCGTGTCAGGATCAGAGACGAAGACGGGATCCCACTGCTCCTCCTCAAACTCTGTCAGAACCGAACTATCCCACACACCAGCTAACGGCATGGCTAAGAATGGAAATGATGCTGAGATTGATGAAGGCCTGTACTCCAGACAGCTGTATGTGTTGGGTCATGATGCGATGAAGCGCATGCAGAGCTCCAACGTGCTGATCTCGGGACTGCGTGGACTAGGTGTGGAGATTGCCAAGAATGTCATTCTCGGTGGAGTCAAGAGCGTCACTCTGCATGACGAGGGAGTGGCCGAATGGCGAGACCTCTCCTCACAGTTTTACCTGCGTGAGGAAGACCTGGGGAAGAACCGTGCTGAGGTCAGTCAAGGGAGGCTGGCAGAACTCAACAGCTACGTTCCTGTGACATCTTACACTGGAGCTCTCACCAATGACTACCTGATACAGTTTCAGGTGGTGGTGCTGACCAACTCTACACTTGATGAACAAAAGCACATTGGTGACTTCTGCCACAGCAAAGGCATCAAACTGATCATTGCTGACACACGTGGACTGTTTGGGCAACTTTTCTGTGATTTTGGAGATGAAATGACTGTATATGACACCAATGGAGAGCAGCCTCTAAGTGCCATGATCTCTATGATCACAAAGGACAGTGCTGGTGTGGTGACCTGTCTGGATGAAGCGAGACATGGTTTTGAGAGTGGTGACTACGTCACCTTCACAGAGGTGCAGGGTATGACAGAACTTAATGGTTGCCAGCCAGTTGAAATTAAAGTCCTTGGCCCCTACACTTTCAGTATTTGTGACACCACATCTTTCTCTGACTATGTGAGAGGAGGTATTGTGACACAGGTCAAGATGCCCAAGAAAGTGGCTTTTAAACCATTTTCGTCATCGATATCGGAACCCGAGTTTCTGCTCACTGACTTTGCTAAGTTTGATCGTCCCGGTCAGCTGCATGTGGGCTTCCAGGCTCTGCATGCCTTTGAGAAGAAACACGGCCGTTCTCCCAAACCCTGGAACCAGTCAGATGCAGATGAGCTGGTTTCACTTGCTGGGGAGGTGAATGCAGCTCAGTCTGGCTCTGCCAAGCAGGAGGAGCTGGACCAGGCACTGCTGAAAAAGCTCTCCTGTGTTGCAGCTGGAGACTTGGCTCCAGTCAATGCCTTTATCGGTGGGCTTGCTGCCCAGGAGGTTATGAAGGCATGCACAGGCAAATTTATGCCCATCATGCAGTGGCTGTATTATGATGCACTGGAATGTTTATCTGAAGCTGAGGAGGAACTTCTCACAGAGGAGGAATGTGCACCTAGAGGCTGTCGATATGATGGACAAATTGCTGTTTTTGGGGCCAAGCTGCAAGAACTGTTAGCCAAACAGCGCTACTTTTTGgTGGGAGCAGGAGCAATTGGCTGTGAACTACTAAAGAACTTTGCTATGATGGGTCTGGCCAGTGGGGAGGGTGAAGTCATTGTTACTGACATGGACACAATTGAGAAATCAAACCTCAATCGTCAGTTCCTTTTCAGGCCGTGGGATGTCACGAAGATGAAGAGTgagactgctgctgctgccgtgAAGCAGATGAATCCATCTATCCGTATCACAGGCCATCAGAACCGCGTTGGGCCCGACACAGAAAAAATCTATGACGATGATTTCTTCGAGAGCCTGAATGGAGTGGCCAATGCCTTAGACAACGTGGATGCGCGTATGTATATGGACCGCAGGTGTGTGTACTACCGTAAACCTTTGCTAGAGTCTGGGACTCTGGGCACTAAAGGGAATGTACAGGTAGTGATCCCCTTCCTCACAGAGTCTTACAGCTCTAGTCAGGATCCCCCAGAGAAATCCATCCCCATCTGCACGCTGAAGAACTTCCCTAATGCTATTGAACACACACTCCAGTGGGCTCGTGATGAGTTTGAGGGTCTTTTCAAACAGCCTTCTGAGAATGCCATGCAGTATTTAACAGACCCAAAGTTTATGGAACGCACATTGAAGCTGCCTGGTGCCCAGCCTGTGGAAGTCCTGGAGGCTGTATATAAGAGTCTGGTGACTGACTGTCCCCGGGGCTGGGAGGATTGTGTAGCTTGGGCACGCAACCACTGGCAGTGCCAATACAGTAACAACATCCGCCAGTTACTGCACAACTTCCCTCCTGACCAGctCACAAGCTCTGGAGCACCTTTCTGGTCAGGACCCAAAAGATGTCCTCATCCTCTAGAATTTAGCACCAGTAATgATTTGCACATGGACTATGTCATTGCCACAGCCAACTTGTTTGCCCAGACGTATGGCCTGCAAGGCTCCACTGACCGCGAAGCTGTGGCCAAGCTGTTGCAGAATGTCAAAGTACCAGAGTTTACCCCTAAATCCGGCGTTAAAATCCATGTATCTGATCAAGAGCTGCAGAGCGCCAACGCCTCAGTGGATGACTCAAGGCTTGAGGAGCTGAAAACCCTCCTGCCTTCTGCAGAGGCAGCATCCCAGTTCAAACTCTGTTCCATAGACTTTGAAAAGGATGATGATACAAACTTCCACATGGACTTCATAGTAGCAGCATCCAATCTGAGAGCAGAGAATTATGACATTCCTCCAGCAGACAGACACAAGAGCAAGCTCATTGCTGGTAAGATCATTCCTGCCATCGCCACGACAACAGCTGCAGTAGTCGGCTTGGTGTGTCTGGAGCTACTCAAGGTCGTTCAGGGTCACAAGAAGCTTGAGTCATATAAGAACGGCTTCATGAACCTTGCCCTGCCTTTCTTTGCCTTCTCCGAACCCATTGCTGCTCCCAAGCACAAGTACTATGATATTGACTGGACGCTATGGGACCGCTTTGAAGTGAAAGGTATTCAGCCAAGCGGAGAGGAAATGACACTCAAGCAGTTCCTAGACTACTTCAAGAATGAACACAAGCTGGAGATCACAATGCTCTCTCAGGGTGTGTCTATGCTCTACTCTTTCTTCATGCCTGCTGCCAAGCTCAAAGAAAGACTGGAGCTGCCCATGACCGAGATAGTAACGAAGGTGTCGAAGAAGAAGCTGGGGAAGCATGTTAAAGCACTAGTGTTTGAACTCTGCTGCAATGATGTGACTGATGAGGATGTGGAGGTGCCCTACGTCAGATACACCATTCGCTGAGAGGACGTCCAaggtggagggagggagggagggggtaCTAGTGGATTTGGAAAGTGGATTAAAAAATCAGATGGTGCTTGAAACAATGGGgcccaaaattaaaaaattaaaacatgatcACAAATATGGACTAGTTATTGACTTCAGAACTCAGTGTTTTAAAACCCAAGCTTGACCCCTGGGGTCATACAcctgcatttttaaatgtttcctaGGCCTGTTGGCATGGGTGAGTGGGATTTGGGGGAGATGGATGTGAATGTGCACCTTTGCGAATGAGCGCTTTGACTGTAACTGTTATTTAAAACTGGTTGTAAAGCTTCAGCATACGAGTAGATTAAATATGCTCATCAGCACTCTcccagtgtaaaaaaaaaaatgatggctCTGTTTTAACAGGTGTTTTGTTCCTTTCCCCACTCTGCTCTTCTCACTCTTTTCATTCATGATGGGCAACATCTGGCtttgtttttaaacactttcaTGCAAATGGTATACAATTGAATGATgccaaaaagaaaatgcaaactggAAGTGAtgacatttaaatgtaagtGCTTTAATCTTTTTCCTCACTTGCTGACATCATTTGATACACTTCATAGCCTTGACATGGACAATACATAATGGCACCTTAAACGCAAGCTGATAAGGGAAGGTGTGGGTGGTGTTACTTGACCGGGTGCTAATTCTGGTTAATGTCTCAAGGCATGTTGGTCCCCTCACTCTAACCCCTTTCTCCTCCATGGGTCCAGTCGGTGTGTCTTATTTGCTTCTCTGGCTTCTCTTTGGGTCAGGGATAAGAACCTGCACATAACTTGAGGATCTTTTTTTGGGTTGTCATGGCGCACACCTTGTAGGACAAACTCTATTCTTTCTACTTTGTTAACCTCCAGGAAACATTAcagtaaaatgtgattttattctgtaatgGGAGCACTTAGTCTAATTCTGATAGTGAATAAAGTTGTAAAAGAT

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0005524 ATP binding molecular_function
GO:0016874 ligase activity molecular_function
GO:0008641 ubiquitin-like modifier activating enzyme activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299029 lncRNA downstream 83750 10396395 ~ 10396740 (-) True G252610
XR_004579740.1 lncRNA downstream 191806 10244041 ~ 10288684 (-) False LOC117599279
TU299250 lncRNA upstream 161733 10655314 ~ 10655522 (-) True G252783
TU299304 lncRNA upstream 216814 10710395 ~ 10711491 (-) True G252833
TU299329 lncRNA upstream 285404 10778985 ~ 10779600 (-) True G252856
TU299332 lncRNA upstream 288554 10782135 ~ 10782588 (-) True G252859
TU299403 lncRNA upstream 371779 10865360 ~ 10865700 (-) True G252920
XM_026920976.2 mRNA downstream 626 10470499 ~ 10479864 (-) True arhgef3l
XM_026920979.2 mRNA downstream 10694 10460694 ~ 10469796 (-) False usp21
XM_034311542.1 mRNA upstream 4137 10497718 ~ 10529717 (-) False camkvl
XM_026920074.2 mRNA upstream 4137 10497718 ~ 10529717 (-) True camkvl
XM_026920842.2 mRNA upstream 54809 10548390 ~ 10561471 (-) False adnpb
XM_026920843.2 mRNA upstream 54809 10548390 ~ 10561262 (-) True adnpb
XM_026920247.2 mRNA upstream 68743 10562324 ~ 10568759 (-) True dpm1
XR_003403171.2 other downstream 10956 10460694 ~ 10469534 (-) False usp21
TU298725 other downstream 450497 10029492 ~ 10029993 (-) True G252373
XR_003403155.2 other downstream 1901890 8566656 ~ 8578600 (-) False ttll10
TU296847 other downstream 2970743 7476274 ~ 7509747 (-) False ctnnbip1
TU296070 other downstream 4172727 6304844 ~ 6307763 (-) False rps26
TU299234 other upstream 142942 10636523 ~ 10638718 (-) False sinup
TU299470 other upstream 520383 11013964 ~ 11015630 (-) False LOC113530950
trnae-uuc_4 other upstream 765462 11259043 ~ 11259114 (-) True trnae-uuc_4
trnan-guu_24 other upstream 779749 11273330 ~ 11273403 (-) True trnan-guu_24
TU299993 other upstream 962440 11456021 ~ 11462706 (-) False LOC113530309

Expression Profile