RNA id: XM_026920789.2


Basic Information

Item Value
RNA id XM_026920789.2
length 1869
RNA type mRNA
GC content 0.43
exon number 10
gene id fam3a
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18703452 ~ 18721160 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGATTGTCACGTGGTCTGTGACGTATTCCTCCTGCAACACAACCCGGAAATAAAGACGCTCTTGCGCTGGTGCAGAGTAATATTTGCTTATCTCTGTTTGCTTTAGGATCCGCTGCTATATCCTGAACATTCTGCGCTGATTTGAGGATCAGTGGATGGGAAGTGCTCAGTGGATGAGGCGTTTATGAGCAGTGCGGGATTAGGAGATGTTTTGATCATGTGCGCTGTAGTGCGGGTTCGCGGCACAGGATTCAGTCACGCGCGCACTTCACTCTGTCCCCGCTGCTTTCTGGAAACTTCctgactgaaacacaaacaaCGAAGACACTCAAGACATCAACGGAGGCTCATCTTCTATACCATTCAGGATCTGCAGTCCGGATATCATGAGGCTGGCAGGACCACTGCGTGCAGTCGGCGTCGTGTTCCTTGTAGGCTTGACTTGGCTTCTGGCAAGTTCCATACTAGGAGGAGATGGAGGTTCTGTCATGAAAATGTTCTTTACTGGTACACAAGAGGAGCCCACTCCAGAACCAGGGCCACGCAGGTACAAGTGCGGTCTCTCGGCCCCATGTCCTCCTAAACACCTCGCTTTCCGTTTGGTGTCGGGAGCTGCAAATGTTATTGGACCCAAGATCTGTTTGGAGGATAAAATGCTTATCAGCAGTGTGAAGGACAATGTTGGCAGAGGACTTAACATTGCCTTAGTAAATGGGGTCACTGGAGAGCTTTTGGAAACAAAATCATTTGACATGTGGGAAGGAGATGTTTCTAATTTGCTGAAGTTTCTGCGACCTCTCCATGAAGGAACTCTAGTGTTTGTGGCGTCCTTTGACGATCCAGCCACCAAGTTGAATGATGAGGCACGGCGGCTGTTTGAGGAGCTGGGCAGCACCGCAATAAAAGAGCTCGGATTTAGGGACAGCTGGGTGTTTGTGGGAGCCAAAGGAATAGAAAACAAAAGCCCATTTGAGCAGcGAATGAAGAACAACAAAAGTAGTAATAAATATGAGGGCTGGCCGGAGTCTTTGGAGATGGATGGCTGCATTCCTTTACGCGCCCCACAAGAGAGCTAATCTCTCAATCGAACAAGCATGAAATAAGGAAATGCACAAACAACTTCAACACTGACTAAACTGGTTCAGTCAGGCACATGGTGGACTCTTGGATCACACTACCTAATcagtttctttttaaagaatttttaaagaattcCAGTTGGTAATACAAAATCTTTCTTGTAAAGGTGAGCCTCAACACAAATATAACACTTTTAGGACAGTAAATGTCAGTCATGACTTTACCTGTCTGGTGTATACTAGCCATAAACActcacatttttatatgtaaagcTTTAATTTATCTTGTCACTAATCCATGCATCCATTGACCAATGGCCCATCATGCTTCATGGGTAAACTTATAATATCTAGAAACATTCCTAGTAACTGGTGTTAGGGAGTGAAAGTGTTACACAGTAAGGAACGCCTGTCtttgttgtatatttttaatacatttttgccATAATTAAATGAAGCGTGGCATGTAGTTGCTGTCAAAGTCATAGCAAGCTTAGGATTAacattttggttgttttttttttctaattttatagTAAACAAATGAAGATGACTGCTGTATTTTAAGTAGAAttgttcaaataaaatatgaatgtgatattATATGAACTCAAAAAGCATCATGctgaaataagatttttttttttttttcggtcaTGTTCCAAGCATCCTAGGTGGTGGAGTTATCATACTGTGGCCACTAGAGGGTGACACAGATTCAAGAATGTGTATGAAATCTAACTATGCTGTCCAATaaactactgtatatacttATACAGGTGGCCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304261 lncRNA upstream 85188 18620249 ~ 18621305 (+) True G257068
TU304260 lncRNA upstream 85318 18620249 ~ 18621175 (+) False G257068
TU304259 lncRNA upstream 85427 18620249 ~ 18621066 (+) False G257068
TU304014 lncRNA upstream 378237 18326232 ~ 18328256 (+) True G256899
TU304013 lncRNA upstream 382423 18322069 ~ 18324070 (+) False G256899
XR_003403140.2 lncRNA downstream 120593 18841753 ~ 18843237 (+) False LOC113530356
TU304314 lncRNA downstream 120628 18841788 ~ 18846170 (+) True LOC113530356
TU304316 lncRNA downstream 120628 18841788 ~ 18846347 (+) False LOC113530356
TU304359 lncRNA downstream 170729 18891889 ~ 18936419 (+) True G257127
TU304358 lncRNA downstream 174697 18895857 ~ 18936419 (+) False G257127
XM_026921011.2 mRNA upstream 54664 18646708 ~ 18651829 (+) True LOC113530736
XM_034312116.1 mRNA upstream 61728 18623471 ~ 18644765 (+) False arhgap4a
XM_026921094.2 mRNA upstream 61728 18623472 ~ 18644765 (+) True arhgap4a
XM_026921093.2 mRNA upstream 61728 18623473 ~ 18644765 (+) False arhgap4a
XM_026920101.2 mRNA upstream 86438 18611377 ~ 18620055 (+) False casp9
XM_034311790.1 mRNA downstream 4117 18725277 ~ 18779657 (+) True si:dkey-151g10.3
XM_034311793.1 mRNA downstream 4117 18725277 ~ 18779657 (+) False si:dkey-151g10.3
XM_034311794.1 mRNA downstream 4117 18725277 ~ 18779657 (+) False si:dkey-151g10.3
XM_034311791.1 mRNA downstream 4117 18725277 ~ 18779657 (+) False si:dkey-151g10.3
XM_026920711.2 mRNA downstream 4117 18725277 ~ 18779657 (+) False si:dkey-151g10.3
XR_004579712.1 other upstream 1585552 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 2198113 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 2310281 16373242 ~ 16396212 (+) False LOC113530371
XR_003403143.2 other upstream 2311493 16363549 ~ 16395000 (+) False LOC113530371
XR_004579698.1 other upstream 2477087 16210650 ~ 16229406 (+) False LOC113530889
TU304341 other downstream 158408 18879568 ~ 18911714 (+) False fmnl3
trnae-cuc_34 other downstream 311757 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304946 other downstream 757142 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 1669649 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 1789084 20510244 ~ 20514195 (+) False LOC113530729

Expression Profile