RNA id: XM_026920803.2


Basic Information

Item Value
RNA id XM_026920803.2
length 2020
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC113530632
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19795054 ~ 19803145 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTCCGCGTGCGGCGTGAGTGAGTCACATGTATAGTGTCCTCTCGCGTGCTGTTATAAACCAGTTTATTTTACTTGTATGCTAGTTTATTAACTAAAATATTGAATGTAAGCTTAAAAGAGAACTATTTGTCAGCGTTTGTAGCCAgttgctagcttgctaacacCTATTAATCTCATGAGCAGGCCTGAAAGCTATAGCGGCTCACGGATTATCTCCAACGGAGAAGCTGAAGCGTTTCTACCGGCCCGTTAGTGCAGCAAGGTGATCGCTTGTCCTGCTCGTTATTAGGAGTATGAGCTCGTTAGCTCGCTCTCGGTCCGAGGTGTTTGGAGAAATCCGGAAGGAGCTGTATGATGACCATGAATTTCGACAGGTTACTCATGTCTTTGTTATCATGGGCGCCTCGggGGATCTTGCCAAGAAGAAGATTTACCCCACCCTTTGGTGGCTCTTTAAGGATGGACTCCTACCAGAGGAGACCTACTTTGTTGGGTTTGCGCGTTCCCACCTGACCATGGATGACATCCGGGCTGCCTCTTTACCGTACATGAAGGTTAAAGATGTGGATAATGAGCGTCTCTCAGCATTTTTCCAAAGGAACTCTTACCTGGCCGGACACTATACAGAGGGAGAATCTTTCTCACAGCTGCAGTCCCACCTGAACTCTTTGTGCCATGGTACAGGTGCCAACTACATCTTCTACCTGGCATTGCCACCCACCGTCTACCACAACGTCACCTCCAACATTCGCCAGCACTGCATGAGCAACAAgGGTTGGAGCAGGGTGATTGTGGAGAAACCGTTTGGCCGGGATCTGCAGAGCTCAGAGGAACTGTCAGCACACCTCTCTTCCCTCTTCACTGAGGATCAGATCTACCGCATAGACCACTATCTGGGCAAGGAGATGGTGCAGAACCTCATGGTACTCAGgtttgGGAACAGAATTTTCGGCCCTATCTGGAATAGGGAAAGTGTTGCCAGCGTTGTTCTCACTTTTAAAGAACCCTTTGGAACTTATGGGAGAGGAGGATACTTCAATGACTTTGGTATTATCCGTGATGTCATGCAAAATCATCTTCTCCAGATGCTCACCCTGGTTGCCATGGAGAAGCCTGCTTCCACCAACTCGGATGATGTGAGAGATGAGAAGGTGAAGGTATTGAAGTGCATAGCACCAGTGGCTCTACATGATGTTGTGTTAGGGCAGTATGTGGGAAACCCTGAAGGGGAAGGGGAAGCTAAACTGGGTTACTTGGACGACCCCACCGTTCCCAAAGGCTCCCACACGGCCACTTTCGCTACTGCAGTGCTCTACGTCCATAACGAACGCTGGGAAGGGGTTCCCTTCATCCTGCGCTGTGGAAAGGCCTTGAACGAGCGCAAGGCTGAGGTGAGGCTGCAGTTCACTGATGTGCCAGGTGACATCTTTAATGCACAGTGCCAGAGGAATGAGCTGGTGGTGCGTGTGCAGCCTGATGAGGCTATTTATGCCAAAATGATGAGCAAAAAGCCTGGAGTGTACTTCAACCCCGAGGAGACAGAACTGGACCTGACCTACCGTAGCAGATACAAGGACGTGAAGCTTCCTGATGCCTACGAGCGTCTAATTCTGGATGTGTTCAGTGGAAGTCAGATGCACTTTGTGCGCAGtgatGAGCTCAGGGAAGCCTGGAGAATCTTCACTCCTCTCCTCCACCAGATGGAAGCAGAAAGGACACAACCAATCCCTTACACATATGGAAGCCGTGGACCTAAAGAGGCAGACGAGCTGATGAAGAGGGTGGGATTCCACTATGGAGGAACGTACAAGTACATGGCCTAGCCGGGGGGAGTGTTGTCACTCAGCTCGGAGGATAAATCAGTGGTGTGGTATAAACTGGAATGTGTTAAGTGGATAAACGCAGTGTTAACAACAAGCTGGAATGTGCTGCAGTCATCTACTTGTATGTTTTCCTATACTTCTGAGTTCagtcttaaattaaaaaaaaaaaaaaccatttcatacctaaaattttttt

Function

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0050661 NADP binding molecular_function
GO:0004345 glucose-6-phosphate dehydrogenase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305265 lncRNA downstream 180375 19611920 ~ 19614679 (-) True G257880
TU305254 lncRNA downstream 203924 19586328 ~ 19591130 (-) True G257870
TU305250 lncRNA downstream 213372 19580212 ~ 19581682 (-) True G257866
TU305220 lncRNA downstream 315322 19479524 ~ 19479732 (-) True G257838
TU305201 lncRNA downstream 329718 19464054 ~ 19465336 (-) True G257819
XR_003403186.2 lncRNA upstream 248277 20051421 ~ 20057906 (-) True LOC113530857
TU305425 lncRNA upstream 325761 20128905 ~ 20129112 (-) True G257980
TU305460 lncRNA upstream 340881 20144025 ~ 20144249 (-) True G258003
XR_003403139.2 lncRNA upstream 511218 20314362 ~ 20331611 (-) True LOC113530344
TU305690 lncRNA upstream 560911 20364055 ~ 20373180 (-) True LOC117599243
XM_034311654.1 mRNA downstream 17120 19660633 ~ 19777934 (-) True hspg2
XM_026920236.2 mRNA downstream 143465 19634054 ~ 19651589 (-) False tmem269
XM_026921242.2 mRNA upstream 674 19803818 ~ 19819735 (-) True galnt6
XM_026920863.2 mRNA upstream 19123 19822267 ~ 19841123 (-) False nol9
XM_026920859.2 mRNA upstream 19123 19822267 ~ 19840627 (-) False nol9
XM_026920862.2 mRNA upstream 19123 19822267 ~ 19840619 (-) False nol9
XM_026920857.2 mRNA upstream 19123 19822267 ~ 19840607 (-) False nol9
TU305224 other downstream 173494 19615527 ~ 19621560 (-) False magi3a
XR_004579690.1 other downstream 408013 19370687 ~ 19387041 (-) False LOC113530570
trnak-uuu_17 other downstream 666518 19128464 ~ 19128536 (-) True trnak-uuu_17
XR_004579689.1 other downstream 730472 18937910 ~ 19064582 (-) False lrp1ab
TU304189 other downstream 1281797 18509155 ~ 18513257 (-) False LOC113530839
XR_003403201.2 other upstream 297855 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other upstream 300630 20103774 ~ 20103911 (-) True LOC113530994
XR_004579656.1 other upstream 307319 20110463 ~ 20119949 (-) False mlh3
TU305550 other upstream 449026 20252170 ~ 20271907 (-) True G258077
TU305957 other upstream 1027684 20830828 ~ 20867958 (-) False LOC117599256

Expression Profile