RNA id: XM_026920808.2


Basic Information

Item Value
RNA id XM_026920808.2
length 1418
RNA type mRNA
GC content 0.46
exon number 12
gene id zgc:171775
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14741169 ~ 14748595 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCTGCGCCGCTAACCTGAGAGCTCAAGAGCCTCCGACACAGCGCTGAGCTCGTGGGCTTGTCGGGAGTACACTGccttattgttattaataactaattaattaattaattaatcaatttcaTGGCTTCTCCTCTGAGAGCGGGTTTCCACCGACTGGAGGTCCAAAAAACCTCCTGGGAAATTCCGGACCGGTACACAACCCTAAATCCCGTCGGTTCCGGGGCATATGGAACAGTATGCTCTGCTATTGACCAGAAAACAAAGGAGAAAGTGGCCATTAAAAAGCTGTACAGACCGTTCCAGTCTCTGATCCACGCAAAGCGAGCCTACCGAGAACTCCGACTGTTACGCCACATCCAACATGAAAATGTGATCTGCCTTCTGGATGTTTTCACTCCTGACTCCTCACTGGACAAATTCCAAACTTTCTACTTGGTAATGCCATTTGTGGCTCAGGATCTTGGCCACATAATGAAGAAGGGGAGGCTCACTGAAAAAGTCATTGTCTACTTGTTCTACCAGTTACTCAGAGGGCTAAAGTACATACATTCTGCTGGGATCATTCATCGGGATCTGAAGCCAAGCAACCTTGCTGTTGATGAAAACTGTGAGTTAAAGATATTGGACTTTGGATTGGCGAGACATGCAGAGATGGAGATGACTGGCTATGTTGTGACACGGTGGTACAGAGCCCCAGAAATCATTTTCAACTGGATGCATTATACTCAGACAGTTGACATATGGTCTGCTGGTTGCATCCTGGCTGAGATGATCACCGGGGAGGTGCTTTTCCCAGGAAATGACAGTATGGACCAGCTGAACATGATCCTGCATCTGACGGGAACACCGCACTCATCACTGGTGCAGAAAATGCAGAGCAAAGATGCAAGGTCATATGTACAGTCTCTCCCAATCCAGAAAAAGAAGGTTCTCAGAGATGTCTTCCCATCCATGGATTCCAAtgCTGTGAATCTGCTTGAGAAGACTCTGATGCTGGACCCAGAAGCCAGACTGACAGCTAAAGATGGACTGTCTCACCCCTACCTCTCGGAGTTTCATGACCCAGAAAGCGAACCCGAGTCTCCCGCTTATGACGACTCATTTGAGAGCCTGGAGCTGGCTATTAGCGAGTGGAagagtCTTATACACATGGAGAtaatgacctttgaccctgacAATCCTAGACAGACTGCAACATAACACTTCATCAGACCTGGGAATATGTTGCAATAAAAAGTTACTAACGATTAAGCTACATGCCTGTATTATCCAACACACCAGCAGTGAGGGATAGTGAGTGTATTTAAGCAGCCATCTTGAAGTTCTTCGGTTTCCGTCTCTGTACACTGTAATATTGCGGTACATGAATACCCATTTTTACTCTGTTTTCCAatatttgtagttacatttaaaaaaa

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301946 lncRNA downstream 36899 14700224 ~ 14704270 (-) False G255071
TU301947 lncRNA downstream 36899 14700224 ~ 14704270 (-) True G255071
TU301888 lncRNA downstream 208581 14530825 ~ 14532588 (-) True G255020
TU301364 lncRNA downstream 1040764 13700009 ~ 13700405 (-) True G254567
TU301398 lncRNA downstream 1044549 13692797 ~ 13696620 (-) True G254600
TU302215 lncRNA upstream 127194 14875644 ~ 14878506 (-) True G255306
TU302322 lncRNA upstream 431936 15180386 ~ 15180640 (-) True G255403
TU302303 lncRNA upstream 433707 15182157 ~ 15185972 (-) True G255385
TU302304 lncRNA upstream 433707 15182157 ~ 15227960 (-) False G255385
TU302326 lncRNA upstream 510035 15258485 ~ 15260105 (-) False LOC113530775
XM_026920738.2 mRNA downstream 67203 14669816 ~ 14673966 (-) True LOC113530599
XM_026920791.2 mRNA downstream 94864 14624061 ~ 14646305 (-) True eif4ba
XM_026920792.2 mRNA downstream 94924 14624061 ~ 14646245 (-) False eif4ba
XM_026920793.2 mRNA downstream 94924 14624953 ~ 14646245 (-) False eif4ba
XM_026921051.2 mRNA downstream 133004 14573892 ~ 14608165 (-) False tns2a
XM_026920159.2 mRNA upstream 91838 14840288 ~ 14847015 (-) True slc16a7
XM_026920171.2 mRNA upstream 224566 14973016 ~ 14979288 (-) False adrm1
XM_026920169.2 mRNA upstream 224566 14973016 ~ 14979288 (-) True adrm1
XM_026920902.2 mRNA upstream 232896 14981346 ~ 15002677 (-) True osbpl2b
XM_034311947.1 mRNA upstream 232896 14981346 ~ 14997524 (-) False osbpl2b
TU301948 other downstream 36899 14699272 ~ 14704270 (-) False G255071
XR_004579685.1 other downstream 590588 14129216 ~ 14150581 (-) False LOC113530423
XR_003403204.1 other upstream 739307 15487757 ~ 15487859 (-) True LOC113530990
TU302676 other upstream 966585 15715035 ~ 15820154 (-) False znf512b
XR_003403156.2 other upstream 1899373 16647823 ~ 16695030 (-) False fam50a
XR_004579669.1 other upstream 2064934 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_004579680.1 other upstream 2928115 17676565 ~ 17695598 (-) True LOC117599224

Expression Profile