RNA id: XM_034311779.1


Basic Information

Item Value
RNA id XM_034311779.1
length 4107
RNA type mRNA
GC content 0.46
exon number 13
gene id lima1a
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20586167 ~ 20610713 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGGTGACGTCACCGGGTGACTTCGGCGGCTGTTTGGGAGTTTGCTGAGGTGCAGGATACAAGTGgactGATCAAGAGAAAGTAAGCAGTTCAATGCACAAACAGCCAGCAACGATTTTATTTAAACACCACTGATAAAGCAAGACACTGCAGGTAAATAGGgatgcagaactgctgtcagagctgctgttatagaaaatgaatcaacaccttctgatcagaatcGAGAtttcagcagcgctgtgatgTAACTGATCATTTCCAGTCAATTTCTTCAGAACTGTGGTGTCAGATTGGGTTCAGATAGATGACCTCATTTGGAAATGGGTGGAGACTTCCTGGAATTGTCTGGGAATATTCCCAAACCGACTGAGTCATAGCAAGAGGGGCGATGATGCGCGCTCTGAATGGCTGGGACTTACCTGCTAGGTGGAACAAGGAGCTGTGTGCTCATTGGCTGGGAGGAGACAAAGtgctcacccacacacacacacacacacagtgtaaaactTAAGAGTCTGAGAGTTCAGAGAGAGCAAGCACACTCACAGGAGGAAAGAAACAGCTGAAACAATCTGAAAGCTACAGACTCTATTAACTTTTGACTTTAAGACGAGGATTAACTCGCCACACAGTCCATTTACTCACGTCCAGCCTGAGGAGCAGAGATGGCAGTCAGCTCATTCAACAGAAGGCAGTGGGCCTCCCAGTCCCTCCGCGTCACAGCGAAAGAGCTCTCGATTGTTGGAACTCGGGGGAAAAATACCGCCATAGCGGAACGATTCTCAAAGTACCAGAAAGCAGCAGAGGAGATCAACTTGGACAAGAAAAAAGCCGTGGAAGGCGTGGCTCTGCAAACCGGTACCCTGAGCGCACTGAAAAAGCGCTGGGAGGCTGAACAATCCCTCTCCTCCGACCAAAGTCCACACACTCCACCAAGATCTGCAAGCTCTGCTGACTCAAACTTCCCCCCGAGGGTCACAGAGATGGAGAAGACGCCACAGAGGGACATGGAGGACACGGACAAGCCCAACGTGCCTCTCAGCAGCCTCAAAATGATGTTTGAGAGCAAGGTTTCTGGAGAGTCGGTACAAACCTCAGGAAGTGGCCCTGACAAAATGGAATTTGGAGACAAAGgagtgTTTGAGACAATGGTGGAGACCACGCCCCTCAGGGAAAGAATGGCCCTCTATCAGGCCGCAGTGTCTAAACTAGACGTGTCCTCGTCCTCTTGTGGCCAGAGTGAAGTGGACATGGAGGCACGTGCTTATAGCGTGaagcagaaggaaaatgtcCCTCCGGTCCCGCTGGATGTGACCTCCACTCCTGAGTCTGACAGCAGGAAAGCTTCAACCACAGATAACAACGCAGGCTCCACTGTGGCTACTCCTGTTTCTGACCATGGCCAAACTAAAACGGTTAAGaagtTCAGTTTGCCGACGCGTGAGAGCTGCGTGACGTGCACGAAGACCGTGTACCCCCTGGAGCGATTGGTCGCCAACCAGCAAATTTATCACAACTCCTGCTTCCGCTGCGCTTACTGCAACACGAAACTGAGCCTCGCAAACTACGCCTCTCTACATAACAACGTCTACTGCAAGCCACACTTCTGCCAGCTCTTCAAGGCTAAAGGGAACTACGATGAAGGTTTTGGACACCGTCCCCACAAGGAGCTGTGGGACTCCCGAGGAGAGGGTGCAGAGGACCAGGAGGGCCAGGAGGAGCCTttggaaaacaacagcagtccCACAGTGGAGGAGTCTCCTCTGGTTAAAGTGAACatcctcactgcctcactgGAGACACGGGCTCAGGATGCATCATCAGAGAGAATGGAGAAACCAGTGGAAACCAGACGGCTGAAGATCTCCTGGCCTCCAAAAACAGACAGCGAGGAAGCTTCAGCTCAAACCAATGTGCTGGCTGAAGAGGCCGCTGTGTGTCCCAGCCGCCCAAAATGGCCACCAGAGGGCGACTCGAGCCCACTCTGTACCGAAAAAGCAGAGCTCTCTGACATCTGCAGCAGCTCCTCGCTTAAAGAGCGCAGCCGCCCCTTTTCAGTCAGCAGCCCTGCCTCAGCTGTCAGTCAACCCAGTCTGACACGCCCAACTCAGCCCCAGCCACTGGAAAAGCAGGAAATAAGTGAAGAGGCTGGACAGGAGGAAGTGGAAGTCGAAGATAGGCGTGATGAAGGAGTCACTGAAGAGAAAGATCAGCCGGAAGAGGAGGAGCCACCGTCTTTCACATGCCAGAGTGCATCACTGGAGGACACACCTCCTTCCTCCCCCCTCAGCGAGGGTGAATCAAGCTCTGGGTTTGAGCAGAAACACTCTCAGGATGTGGGATTCTGGGATGGCGAGGAAGAGCAAGATGCGTCCATTGAGGATGTGATCAGGAAAAACCGTCACTACGAAGAAGACGACGACGATGACGATGACTGATCCGTGTTACCAATAAATGAGTGAAACGAAATTAAAGTCTGTTTAATTCCACTGACTTTCAAGGGATCACCTTCACTGGTCTTCCTTTTATCTGTGGCAGTAGTCTCTGTCCCTCAGTGAGTGAATTCAGATTTCCACATGGGGCCACATCATGTGCAGCACATGAGAAAGATGcacaaggttttatttttattggtactttttatgtatgtacagtgtgtattttCTATGTCTTTTTTGTAGCGTATGGGTTGCCATTTAATGTTGCTTTGAAATTTTATAGAATCTTTTTTCATGTTATCTGTTAGATAgaagaggtgccaacatttacagtttGGCTGTGGCATTTGCAGTTTCTGACTCTGTGCCACAAAAATATGGAGGACACCTGAAAACGACTCTTTTCTACTGTTTTAGCTAAAGCAAAATGCGAATTAAATTCTCCCAGTGGAcaagccaattcactgaaggggaaaggatgcaGTACATAATAGacatttgcttctggtagtgCTTATGCTGACTTTACCTTACACCTTAGACTGTGAATTCGTAAACCACTGTTTTGTGAACCACTAGAAAACAAGAACTGGTCTGTAGTCGCTAAAAGCACAGGATAGAAATTGCTGTTCATCATTTATGACACCACTAACCGTTAGGGTTTTTTGTggtaaagttgttttttttctctctgtttgctaggattttcttgcaCCTCTGTAGTTCTGTTTTAGATGCTCTTATATAATCCACCATAAAACAAGTTGTACAAGGACAAAAAGCAGTCTACTAGTTCAagtcattcattattattattaatttttttttttccagatgcaaaataatttgtttttgattGAGCATTAAGACTTGGCAGTCATCCAGCTGTGTGAGCTAGAGGCTCGGACTTTGGAAATTTGTTTTAGTCATGGAAATATGTCTCAGCACATGTGATCTTTTAGAAGTGAAATAGGTTGTGTGCTATGTATGGACAGCTGTATGGATGTATCAATGGATGCCTTTTAGCACGGTCTTGCGCacttgcattttaaatgttacttttttttaaaaccagggGACCAAATTTCCTTcaataaataagtatttaatacataattgttttttttttcttcaacatttTGATTGTTGGGCCTCCAAAAATGGGTGCGTTTACACAATTTATacaagaaataatgaaaaatgaagtgACTCAGGATTTCTTAAACTAACACAGTTCACTATGTGTACTCTCTCTCAAGTGACTGTCACATGCCCCTATAGCTCATGTTCCAACTGCTTGCTTTCTAAAAGATTGATCTAATGCTTAGATTCCAAATTTCTATGGAAATCATAACCATATGTTGGAAATGGTTTCGTGCTGCAATTAGAGTACGATTGTAAACATTTCTAGCAGCATGAGATCTCGcataacagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacaaaagCAGTCATCTATTATACAACTCAACAATATAAAGGAGCAGGCAGAAAACGATTGCTCGATGGTCTGCTTCTTCATATTCCTATATGGTTTTATCCAAATTCAAGACTTTTTCATGTGATCACAAGTATTACACTTTTATGTAAACCTTATCCCCTTATCCAGAAAGTAaagcactcattctaatatgttatca

Function

GO: NA

KEGG:

id description
K23026 LIMA1, EPLIN; LIM domain and actin-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305640 lncRNA upstream 9378 20567790 ~ 20576789 (+) True G258156
TU305574 lncRNA upstream 199354 20369995 ~ 20386813 (+) True G258097
TU305577 lncRNA upstream 206833 20369995 ~ 20379334 (+) False G258097
TU305179 lncRNA upstream 476941 20108390 ~ 20109226 (+) False G257803
TU305180 lncRNA upstream 476941 20108390 ~ 20109226 (+) True G257803
TU305646 lncRNA downstream 828 20611541 ~ 20657067 (+) True G258162
TU305792 lncRNA downstream 52969 20663682 ~ 20680938 (+) True G258273
TU305795 lncRNA downstream 71657 20682370 ~ 20756538 (+) False G258275
XR_004579728.1 lncRNA downstream 86272 20696985 ~ 20699668 (+) True LOC117599265
XR_004579729.1 lncRNA downstream 97402 20708115 ~ 20711958 (+) True LOC117599266
XM_026921356.2 mRNA upstream 41370 20537706 ~ 20544797 (+) True copz1
XM_026920987.2 mRNA upstream 72789 20510244 ~ 20513378 (+) True LOC113530729
XM_026921098.2 mRNA upstream 139185 20439254 ~ 20446982 (+) True hoxc1a
XM_034311741.1 mRNA upstream 155114 20403301 ~ 20431053 (+) False hoxc3a
XM_026920287.2 mRNA downstream 50693 20661406 ~ 20666057 (+) True igfbp6b
XM_026921162.2 mRNA downstream 57400 20668113 ~ 20680070 (+) True pip4k2ca
XM_026921045.2 mRNA downstream 73652 20684365 ~ 20686778 (+) True LOC113530755
XM_026920339.2 mRNA downstream 78473 20689186 ~ 20691614 (+) True LOC113530407
XM_026921277.2 mRNA downstream 109152 20719865 ~ 20729933 (+) True tspan31
XR_003403172.2 other upstream 71972 20510244 ~ 20514195 (+) False LOC113530729
TU305571 other upstream 187453 20390809 ~ 20398714 (+) True G258096
TU304946 other upstream 1107272 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 1553179 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 1674453 18879568 ~ 18911714 (+) False fmnl3
XR_004579743.1 other downstream 292392 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 292434 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 617607 21228320 ~ 21230871 (+) False si:ch73-290k24.5
TU306357 other downstream 927541 21538254 ~ 21542254 (+) False LOC117599233
trnal-uaa_2 other downstream 1701093 22311806 ~ 22311888 (+) True trnal-uaa_2

Expression Profile