RNA id: XM_026920841.2


Basic Information

Item Value
RNA id XM_026920841.2
length 3386
RNA type mRNA
GC content 0.43
exon number 16
gene id tfcp2
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16936562 ~ 16960566 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTATTAAGCCTTATGCAATCGACGAAGAAAACGACCACGGCTGTTACGGCTCTAGTGAGCAGAAGGAATAAACAAACATGTCTCACGtgtaaattttcatttttttgtgttggtCCAGTCAGTTTTCGCTCTTTTCTTTCTGATAAATCAATCTTCGTTACATTTACCGGCCACCAGGACTTCTGTGATATAACTTACGGTAACAGTTTCCTGTCTAGACCCCATCTAGCTGTTTCATTGCGAAGACGACGGATTGAAATATGGCGTGAAGAGGGGTCCAATGGATTGCAATTGACTTCTTTTTATTCCTGAGCCAAATAAAACGAGCGTCACGCAAGTGCGTGTGATCCTGCACACAACTCGAAAGAATTCTAGGCCACTTTTGTTCATCGTGGTCAATACGAGCTGAGTAAGCTCCTCGTCGTGATGGCCTGGGCTCTGAAACTGCCGCTCGCTGATGAGGTGATCGAGTCCGGCCTGGTGCAGGATTTCGACGCCAGTCTGTCTGGAATTGGCCAGGAGCTTGGAGCAGGAGCCTACAGTATGAGTGATGTGCTGGCACTCCCCATCTTTAAACAGGAAGAGTCAAATCTGCCACCTGATAATGACAACAAAATCCTTCCCTTCCAATATGTTCTTTGTGCTGCCACGTCACCAGCTGTCAAACTACATGATGAGACACTCACCTACCTCAACCAAGGACAGTCTTACGAAATTCGAATGCTGGACAATCGGAAAATGGGTGAGCTTCCAGAGATCACAGGCAAAATGGTGAAGAGCATCATTCGTGTGGTTTTTCATGACCGGCGACTGCAGTACACTGAGCACCAGCAGCTGGAGGGCTGGCGCTGGAACAGACCAGGTGATCGAATCCTTGACCTAGATATTCCTATGTCTGTTGGTATCGTGGATCCCAGGGCAAACCCAACACAGCTTAACACAGTGGAGTTCCTATGGGACCCATCAAAGCGGACTTCAGTGTTCATCCAGgTTCATTGcatcagcacagagttcacaATGCGCAAGCATGGCGGTGAGAAGGGGGTTCCATTTCGGATCCAAATTGACACGTTCAAAGAGAATGAAGCAGGAGACTACACAGAACATCTGCACTCTGCCAGCTGCCAAATCAAAGTCTTCAAGCCCAAAGGTGCTGACAGAAAGCAGAAGACTGATAGAGAAAAGATGGAGAAGAGGGCACCTCAAGAAAAGGAGAAATACCAGCCGTCATATGAAACCACCATCCTTACTGAGTGCTCACCGTGGCCTGAGGCCACTTATGTCAACAACTCTCCATCGCCAGGCTTCAGCAGCACCCACAACAGCTACCCTACTGAAGGGAATGGCTCACCGAATCACCAGCCAGAACCAGTGGCACAGGTAGCAGATAATCTGGTGCCCACTGCAACACCTCAAGAAGCACAGCAATGGCTCCATAGAAACCGCTTTTCGCCATTCTGTCGTCTCTTCACAAACTTCTCAGGGGCAGACCTGCTGAAACTAACTAGAGAGGACGTCATTCAGATCTGTGGCCCAGCTGATGGCATACGACTGTTCAATTCACTAAAAGGAAGGGTGGTTCGCCCAAGACTCACTATCTATGTGTGCCAGGAGTCTCAGCAGGCCCGAGACCAACAAAAACATGAGAACGGAGATGGTGCTAGCAATACCTTTTTTGTGTACCATGCTATTTACCTGGAGGACCTAACGGCCATCGAGCTGACTGAGAAATTAGCTCAGCTTTTCAACATCTCTCCACGCCAGATCAGCCAGATCTTCAAGCAGGGACCCACAGGCATTCATGTGCTTGTCAGCGATGAGATGATTCAGAACTTTCAGGATgagatgtgttttgtgttggaCACAATGAAAGCTGAGACGAACGATGGCTATCACATCATCTTGAAGTGAGAATGCAGATTGGGCAAATAGTCGACACCCATTTTCCAGCAGATTAATCTTGATCAGTATGCTTCCCCACAGTCCCTACCTTCACTGTTCCTGGATCTTTTGATTACGATTGTTTCTTACAGTTGTATTGCTCAGGCATTAGAGGCCACTGTGGTAAAGTGGAAATGCATCTGGCTTGTTCCGATACCTTACTGTCGTACTCTCCACAGACTGTCTGTACTGCCAGTACTATCAGACTgcagattttattgttttgtattttattgctttagttatcctttctttttaaaaatctcttttctTTGATGTCTATACATTAGTTGTAAGCACTGGTGTGCCAGAGCCTGCTGCCTGAGAATGACTGAATGGGTTGTTGTAGAATTAGCATTAGCAGACACTGTCTGACAAGGTCTTTTTGCATCCTGTGCCTATATCCCACCATTTATCAGCATTGCGAGTTATTATCCACCATGCAAGGCAAAAGTCATAGTAAAAGTGTAATCAATAATTACACCTGATAGTCCCCTATATTGATTCCCCACTGAAAAAGTGGTTTCAACATGTTCTGTTAGTAGGCTAATTTATAACGCGTATTACGCTTATGttatcaaaataaattatttcagtAACTTCCCCTGGTTTGCCTACAGGAAGAAAAGTAgcactgctgctactgctactgttgAGTTACTTTTCTGTAGCTCATTTATTAACAAGGGTTTTCTGCAGAGTAACTAATCCTTTCTTTGTAAGTGTAGTAGTACTTCTAAATTGGTATAAATTCTCAATCCGAGAAACATGAATTCAGTTGGTAATTCACAACAGTATAGTCACACTACATTTTGTTGTTAAATGTTCCATTATACTATTCAGACAGTGGGTATAAATGGCAACACCAGTCCATTACCTCCTCCATATTCTTTTTTGTGCTtagtatttttcttctttaaatacAGGCTTATTCTATAGAACAAGTTCTTACAAAGATCTGTTCAGACCaggatttgttttcttttatatcatgtttTATGTACGTACACCAACTGCTTTGTGTTGGCCGTGATCATTGTTgggctgttgttttttttgtttgtttgtttttgtttgtttttttttttgtctataacCATTGCAATGCAAATCGATTTGGTGTGAAAAGCATATGTTTTAAGTGCTTCTGAAGGTAGAGCGGGTTAGCTGTGTTGGATGTATGCAAGGCAGTAAAGTCACTGAAGACTTTCTCTCCACCATTTTCTCATGTCAGTGcaacaattaaaacattttacccATTAAAAGCAATTTTGCTTGTGTGTCAGCTTTGCTCCAGCCACAGTTTGCAATATCTCATTTGATGCTAACATTTTATACTGAGTATATTTCAGATGGATTGTAATTTATCTCGATGCTGGCTTGAATTtcatgtatgtacagtattcaCACAACCAGTAAAAGTGAAAATCAGTATTGACAAACCA

Function

GO: NA

KEGG:

id description
K09275 TFCP2; transcription factor CP2 and related proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303285 lncRNA upstream 13159 16922911 ~ 16923403 (+) True G256239
TU303148 lncRNA upstream 59526 16876802 ~ 16877036 (+) True G256119
TU303142 lncRNA upstream 85382 16847154 ~ 16851180 (+) True G256114
TU303122 lncRNA upstream 174016 16756532 ~ 16762546 (+) True G256097
TU303097 lncRNA upstream 207396 16661652 ~ 16729166 (+) True G256077
XR_003403182.2 lncRNA downstream 87511 17048077 ~ 17050931 (+) True LOC113530783
TU303360 lncRNA downstream 88338 17048904 ~ 17049092 (+) False LOC113530783
TU303367 lncRNA downstream 94300 17054866 ~ 17055091 (+) True G256319
TU303370 lncRNA downstream 97626 17058192 ~ 17058497 (+) True G256322
TU303379 lncRNA downstream 146151 17106717 ~ 17108738 (+) True G256331
XM_026920396.2 mRNA upstream 22490 16872863 ~ 16914072 (+) False pou6f1
XM_026920395.2 mRNA upstream 22490 16873960 ~ 16914072 (+) False pou6f1
XM_026920394.2 mRNA upstream 22490 16877167 ~ 16914072 (+) False pou6f1
XM_026920393.2 mRNA upstream 22490 16877288 ~ 16914072 (+) True pou6f1
XM_034311786.1 mRNA upstream 22490 16877764 ~ 16914072 (+) False pou6f1
XM_026920744.2 mRNA downstream 44499 17005065 ~ 17034276 (+) True csrnp2
XM_026920459.2 mRNA downstream 110571 17071137 ~ 17124951 (+) True itga5
XM_026920984.2 mRNA downstream 211626 17172192 ~ 17175513 (+) True slc48a1a
XM_026920301.2 mRNA downstream 215141 17175707 ~ 17188377 (+) True LOC113530386
XM_034312245.1 mRNA downstream 217282 17177848 ~ 17188377 (+) False LOC113530386
TU303060 other upstream 428182 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 540350 16373242 ~ 16396212 (+) False LOC113530371
XR_003403143.2 other upstream 541562 16363549 ~ 16395000 (+) False LOC113530371
XR_004579698.1 other upstream 707156 16210650 ~ 16229406 (+) False LOC113530889
TU302132 other upstream 1768894 15117112 ~ 15167668 (+) False rps21
XR_004579712.1 other downstream 110570 17071136 ~ 17120941 (+) False itga5
TU304341 other downstream 1919002 18879568 ~ 18911714 (+) False fmnl3
trnae-cuc_34 other downstream 2072351 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304946 other downstream 2517736 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 3430243 20390809 ~ 20398714 (+) True G258096

Expression Profile