RNA id: XM_026920842.2


Basic Information

Item Value
RNA id XM_026920842.2
length 4256
RNA type mRNA
GC content 0.44
exon number 4
gene id adnpb
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10548390 ~ 10561471 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTTTTAGCAAATGGCGCCCCCTATGGATATTTTGCGTGCTATTGCACACGGGGGGGTTGTTTACTGCGATATCACTGGGAAAAATACCCGGCGCGAAGACACCCGGCTTTTTGAAGTCTGTGAATTCCAGGTGGGCAGCATGTTCCAACTCCCAGTTAACAACCTTGGCAGTTTGCGGAAAGCCAGGAAGAATGTAAAGAAAGTACTAGGGGATATTGGCTTAGAGTTTTGCAAGGAACACGTTGACGACTATAAAGACTTTGTGCCCAATGAGTTCTACGTCAAGAACACCACATGggatgatgtgtgtatgtgggatcCTTCTCTTACAAAAACACAAGACTACCGGTCAAAGCCATTCTGTTGTTCAGACTGCCCATTTTCTTCTAAGTTCTTTTCTGCTTATAAGAGCCACTTTCGTAATGTCCACAGTGAGGATTTTGAGAATCGTATCCTTCTTAACTGCCCGTATTGCACTTACAATGGGAACAAGAAGACTCTGGAGACGCACATCAGACTCTTTCACATACCCAACAATGCAGTGCGCCAGAGGACTGGGGGCCTCCAAGGGGCAATAGCTGGCCTGAAGGATGGTAATCGCCTGGAGAAGCCTCGAGACAGTGTAGAGCAGGCAGTGTACTACTGTAAGAAATGCACTTATAGGGACCCACTATACAATGTGGTGCGCAAGCACATTTATCGGGAACACTTCCAACACGTTGCTGCTCCGTATTTGGCCAAACCCGGTGAAAAGACAACGACTCCTAATGGATCAACAGCTGGTCCTGACACAGGCAAAGGTAGCATTACAGATTCTAATAGCCCTGCAGGTGCTAGTAACAGCTCAGCCATTCACTGTAAGCGCTGCCTTTTTGTGCCCCGTACTTATGAGGCACTAGTGCAGCATGTCATTGAGGACCATGAACGCATTGGTTACCAAGTTACTGCCATGATTGGCCATACAAATGTTGTAGTACCTCGTGCCAAGCCTGTTATAATGGTGGCCCCTAAAACCCAAGTAGACAAAGGTGTCCCTAGTGCTACACCAAAGGGCACTTTGGTGGCTTCTGGACTGCGGCCGTTGTCCACACAGCAGTTGAGTCGTATTGTAATACCTAAAGGGAGTTTGAACTCCACTCGGCTCTTATCAGGTGTTAATTTGAAGTCGGGTACATTTGGCTTGAAATCTGGCACTACTCAGGCAGTGTCCATTGGGGGACAGCAAGTGCGCATTGCTTTGCCAGGCAGTGCACAACTTTCAGTGACCCAGCAATCCCAAACATCCAGACCTCAACTTTCTTCTAATAGTCTACGCAGCCCAATTTCTGCATCAACATCTGCTTCAGTTCTGAAGATTCCGCCACTGACCTCACAAATCCAGGCAGCTGCTGCTAGCGTAACATCTGCTGCTCCCAGGAAAGGCATCTCTGTCCTGGGCACATCCTACACTCAGAAATGGAAGATCTGCACAATCTGCAATGAGCTGTTTCCAGAAAATGTGTATAGTTCTCATTTTGAGAAAGAACACAAGGCTGAAAAAGTGCCAGCAGTGGCCAACTACATCATGAAGATCCACAACTTCACCAGTAAATGCTTATATTGCAACCGCTACCTACCTAGCGACACGCTACTCAACCATATGCTAATCCATGGTTTATCATGTCCACATTGCAGGGCTACTTTCAATGATGTGGAGAAGATGGTGGTACACATGCGAGGATCACATCCCAATGAGTCTGTTGGGGTACGCACTGATTCCCCACTGACCTTTGATCTCACCCTTCAACAGGGAAACCCCAAGAATGTCCAGCTGATTGTCACTACTTACAATATGCGTGATGCTCCCGAAGAGTCTGTGGCATTCCATGCCCAAAACAAATCCTCACCCACCTCACAGGGAAATAAGCCTCCAAATCCACGCTTCCCAAAGATACCTGCTGAGACCCCAGATGCAACAGTTGTTAAGAGTGGACCACAGACAGCTGTTCCCTATAAGAGAGATGTGGGCAAGACCCTTTGTCCACTCTGCTTCTCCATTCTGAAGGGTCCTATCTCTGATTCTCTTGCACACCACTTGAGGGAGAGACATCAGGTGATCCAGACAGTTCATCCAGTGGAGAAAAAGCTAACCTATAAGTGCATACATTGCCTTGGTGTCTACACCAGTAACATGACGGCCTCTACTATCACTTTGCACCTAGTGCACTGTCGGGGTGTGGGGAAAACTCAGAACGGCCAGGACAGCAGGTCTTCTGCAACTTCTCGGCTTGTTAAGGCTCAGGGAGCTTCCTTAAAACGGGCCGGCTTTCAAAATGATGGCGAAACTGACTCAAAGAAACGCAGAGTAGGGCCAGAAGACTACACTCAGTCAGGCCCGCTTGACTTAGTTGAGCAAAAAGAGGAGCCTGTTGTATTGGCCTTAAACCCAAAGGGCCACGAGAATGAGTCCTATGAGGCTCGCAAGGCTTTTCTCACCCAGTATTTTAACAGGCAGCCCTACCCCACTCGCCGAGAAGTGGACAAGCTAGCGTCCAGTCTCTGGCTGTGGAAATCGGATGTTTCAAGCCATTTTGCAAATCGAAGAAGGAAATGTGTCCGTgactgtgaaaaacaaaaagttagCGTTTTGCTTGGATTCAAAATGCACCATGTTATGCAGTTACAGCATGTAATGGACTTTGACACTGAGTGTTACTTTGAAACCAATGAAAAGGAGCAAAAAAGTCGGACATCTAGGGATTTCATAGGCAGATCTGCCAGTGCAATTAGACGACTTAAGCAACAAGCTATTATTAACGGTGATGTCCAGCAGCATGGGGTGCCAGCTAGATCTACTGCCAATGCTTCACCACACTCTAATGGTCAAAAAGTCACCCGAGGGTACAGTTGCAATGAGTCAGTCAACACACTTTTAAAACCTGGGGGACTTATAAATTCAGAGCCCATCTCTGTGGACTCAGACAGCGATGACGAGAGAGATCTCAAGGAAGCACAACAAAAGGACTCCAAATTGAACAACCAGATAGTTAGTGGGGTAAAAAGTGAAGAGAGTACAAGTGACTCTTACCCAGAGGATTCTCTCAATGGTGAAAACGGTTATGGGTCATTTGACCAGCTGCAAAATAGAGGAAGGCCCAAAGAAGAGGGTCAGTCTGGACAATCAGGTACCTGCCTTGGCAAGCAACAGGTCTGATATTTAAATacagttattaaaaatacaaatgcagaGTTCACATGTTAAGTTTCCCAGACATCAACAGTGCTGCCTCACTTGAACTTGTGGACCATGCTAATGGGCAGTGAGATGGGATACTTTCGTAAACTTTCTGAAGCCATTTTAAAGGCAAAAATTCAGACTTTTGATAATGTAGAGATGAGTGTTAAATTAGATTACTGAAGTGGAGGCAAGAAGGAGCTTTTCCTCAGGCTAGGAAAAGATAACGCTTAAAATGCCCCAAATCAGTAGAATATGATTTGCCTTTAGTTTGTTTCTTTGAAAGTTTCACAAAATACTTAATGTACATCTAGCCACTGTTATGTGGCCGAATGAGTGTTTATTAGAATTACAGGTATTCCTGAATTTCATGTAATCATATAGCTAGTGTATATTTGTACAGTCTTTTAGTTATGTCTAAGATGATGTTGGTGTATGTGTGCTCAGATTTGCTAATCATTTTGTGCTCACTCTAGATGGTCATATGTTATACATTGGTTCACTTAATGGATGTGGCTTTTGGTGGCTGTTCAACAtggttatttttaaacaaactatAGCAGTTTGCTAagtaatatatctatatatcaaaagcaaataaaataacctcttgctttttatcttttctgtttataactgaagtattccttttttttggtctttgcCATGACATACCCTTTAGGCCACTGTAAGAGCAGTTTGCCCTGATATAATTGCTGTCCTGAGGTCAGAGCAAAGAGCAGTCTGAGTGACCTCCATTGCgttgtgctttgtgttttaattGTGCCCAGTTTCAGCCTCTGCAGAACAGTGCTTGTTTTCTCACATCATTTTCAGtagttaaacttttttttgatTGCTTCCATGAATGGACTCTGGATTCTGCCTGTGGTGCACAAAGAGCCTTCACCATCAACCTGACTTTGTTGTCTGTATGTTTTAGTTTGTGACCTGCAatttatgtttgtatgtttttgtttttggtttgtttatttcacttaaagcatttctgaataataaagtGCTGTATTGTGCTTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299029 lncRNA downstream 151650 10396395 ~ 10396740 (-) True G252610
XR_004579740.1 lncRNA downstream 259706 10244041 ~ 10288684 (-) False LOC117599279
TU299250 lncRNA upstream 93843 10655314 ~ 10655522 (-) True G252783
TU299304 lncRNA upstream 148924 10710395 ~ 10711491 (-) True G252833
TU299329 lncRNA upstream 217514 10778985 ~ 10779600 (-) True G252856
TU299332 lncRNA upstream 220664 10782135 ~ 10782588 (-) True G252859
TU299403 lncRNA upstream 303889 10865360 ~ 10865700 (-) True G252920
XM_034311542.1 mRNA downstream 18673 10497718 ~ 10529717 (-) False camkvl
XM_026920074.2 mRNA downstream 18673 10497718 ~ 10529717 (-) True camkvl
XM_026920773.2 mRNA downstream 52263 10480490 ~ 10496127 (-) False uba1
XM_026920772.2 mRNA downstream 54808 10480490 ~ 10493582 (-) True uba1
XM_034311853.1 mRNA downstream 54809 10480490 ~ 10493581 (-) False uba1
XM_026920247.2 mRNA upstream 853 10562324 ~ 10568759 (-) True dpm1
XM_034311722.1 mRNA upstream 8638 10570109 ~ 10617516 (-) True LOC113530527
XM_034311721.1 mRNA upstream 8638 10570109 ~ 10605288 (-) False LOC113530527
XM_026920643.2 mRNA upstream 8638 10570109 ~ 10605288 (-) False LOC113530527
XM_026920647.2 mRNA upstream 47422 10608893 ~ 10619665 (-) False LOC113530527
XR_003403171.2 other downstream 78856 10460694 ~ 10469534 (-) False usp21
TU298725 other downstream 518397 10029492 ~ 10029993 (-) True G252373
XR_003403155.2 other downstream 1969790 8566656 ~ 8578600 (-) False ttll10
TU296847 other downstream 3038643 7476274 ~ 7509747 (-) False ctnnbip1
TU296070 other downstream 4240627 6304844 ~ 6307763 (-) False rps26
TU299234 other upstream 75052 10636523 ~ 10638718 (-) False sinup
TU299470 other upstream 452493 11013964 ~ 11015630 (-) False LOC113530950
trnae-uuc_4 other upstream 697572 11259043 ~ 11259114 (-) True trnae-uuc_4
trnan-guu_24 other upstream 711859 11273330 ~ 11273403 (-) True trnan-guu_24
TU299993 other upstream 894550 11456021 ~ 11462706 (-) False LOC113530309

Expression Profile