RNA id: XM_026920856.2


Basic Information

Item Value
RNA id XM_026920856.2
length 2031
RNA type mRNA
GC content 0.44
exon number 12
gene id sars1
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16574026 ~ 16587748 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAGTGAACTACATAGGGTATGAAATAATGGCTCCTTcgccctatatagtgcactaaaTGTCTAAAAGTAAGTCATTTGTGAATCAGCCCGTGACGGACAGAACGGAACACTGAATCACTCCCCATTACTGCGAAGCCCTGTTCCAATTGTGTGCACGGTTTTCCTAATTTCGCCTTTATACAAGAGCAGTGCGGCATCATGGTTCTTGATCTAGACCTTTTTCGGACAGACAAAGGCGGCGATCCAGAAATTGTGAGAGAGACGCAACGAAAAAGGTTTAAAGATGTGTCCTTGGTGGATAAACTCGTTCAAGCAGATAAGGAATGGAGGAAGTGTCGCTTCATTGCTGACAACCTCAACAAGGCAAAGAATTTATGCAGCAAATCTGTTGGTGAGAAAATGAAGAAGAAGGAGCCAGTTGGAGATGATGAAACCCTCCCAGAGGAGGTCCAGAACCTGGAGACACTCACAGCAGACATATTATCAACACTGACTGTAACTCAGATTAAAAAGGTTCGAATGTTGGTGGATGAAGCAATTCAAAAAACAGACAATGAGAGGCTGAGGCTGGAGATGGAGCGCTTTGAATCCCTGAGAGAGATTGGCAACCTCCTACACCCTTCTGTTCCCATTAGCAATGATGAGGATGCTGATAATAAAGTTGAGCGCACCTGGGGTGACTGCACAGTGCAGAAGAAGTACTCTCACGTGGATCTGGTTGTCATGGTGGATGGATATGAAGGAGAGAAAGGTGCCATCATTGCGGGAAGCAGAGGATATTTCTTGAAGGGACCTCTAGTTTTCCTGGAGCAGGCTTTGATTAACTACGCCCTGCATATCCTTTACAGCAGGAATTACACTCTCCTCTATACGCCATTCTTCATGCGGAAAGAGGTCATGCAAGAGGTTGCTCAGCTCAGCCAGTTTGATGAGGAACTATataagGTTATTGGGAAGGGCAGTGAGCATTCTGATGATACATCAGTGGATGAGAAGTATTTGATTGCCACTTCAGAACAGCCCATAGCAGCCTTCTTGAGAGATGAGTGGCTCAAGCCCGAGGACCTGCCCATCCGCtttgctggcatttctacctgcTTCAGACAGGAAGTGGGGTCCCATGGCCGAGACACCCGTGGCATCTTTAGGGTTCACCAGTTTGAAAAGATTGAACAATTTGTGTATGCCTCACCTCACAACAACAAGTCATGGGAGATGTTTGATGAAATGATCACAACTGCAGAAGAATTCTACCAGTCGCTAGGATTACCCTACCGCATTGTTAACATTGTCTCTGGTTCTTTGAACCATGCAGCCAGTAAGAAGCTGGACTTAGAGGCTTGGTTCCCAGGTTCTCAGGCTTTTAGGGAGCTGGTGTCCTGCTCCAATTGTACGGACTATCAAGCTCGCCGCTTACGTATACGCTATGGCCAGACGAAGAAGATGATGGACAAGGCTGAGTTTGTGCACATGCTCAATGCAACCATGTGTGCTACTACCCGTGTAATATGTGCTATTCTGGAAAACTACCAGACTGCAGAGGGCATAATCATTCCAGAGCCACTCAGGGTGTTCATGCCTCCAGACTTAACAGAAATAATCAAGTTTGTGAAGGCAGCTCCTATTGACCAAGAGTTTTCAAAGAAGCACAAGAAACAACAagagggaggaaagaaaaagaagcagcaAGCCAATGCCACTGACTTGCAAAACAAAGTGGAGAACATGTCAGTGAACGACTCTTAAAAACTTCTGTCCTGCAGCTGTGGCTATTCATTACTGGTCCCTTCTAACTTCTATTTCATACCATTAGtctattataatatataatttcatgccacctctttttattttctaatcatGCATGTAAATCTGTCAACATTATGGTTAGTTTCCTTGATGTGAAACATGGCTTCTTCACTGGTGACCTGTTCTAGCTGTCAACAGTGACATGTACAGAACTTGCTTGAGATATCTTCAAAGGGATATGAGTATGGTGGCACatccaaataaatgaatatgaaacaaTG

Function

GO:

id name namespace
GO:0006434 seryl-tRNA aminoacylation biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004828 serine-tRNA ligase activity molecular_function

KEGG:

id description
K01875 SARS, serS; seryl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403197.2 lncRNA downstream 8553 16560724 ~ 16565473 (-) True LOC113530939
TU303061 lncRNA downstream 65614 16507990 ~ 16508412 (-) True G256047
TU303057 lncRNA downstream 69859 16503938 ~ 16504167 (-) True G256043
TU303054 lncRNA downstream 76337 16497478 ~ 16497689 (-) True G256040
TU303013 lncRNA downstream 195429 16367155 ~ 16378597 (-) True G256004
TU303192 lncRNA upstream 36718 16624466 ~ 16624772 (-) True G256163
TU303193 lncRNA upstream 38494 16626242 ~ 16626535 (-) False G256164
TU303194 lncRNA upstream 38494 16626242 ~ 16626617 (-) True G256164
TU303198 lncRNA upstream 41233 16628981 ~ 16629517 (-) True G256166
TU303189 lncRNA upstream 43644 16631392 ~ 16632448 (-) True G256160
XM_026920962.2 mRNA downstream 753785 15658336 ~ 15820241 (-) False znf512b
XM_026920960.2 mRNA downstream 753785 15658336 ~ 15820241 (-) False znf512b
XM_026920961.2 mRNA downstream 753786 15658336 ~ 15820240 (-) False znf512b
XM_026920967.2 mRNA downstream 753786 15658784 ~ 15820240 (-) False znf512b
XM_026920969.2 mRNA downstream 753786 15659186 ~ 15820240 (-) False znf512b
XM_034311723.1 mRNA upstream 53712 16641460 ~ 16647701 (-) False si:ch211-207e14.4
XM_026920434.2 mRNA upstream 53712 16641460 ~ 16647701 (-) True si:ch211-207e14.4
XM_026920436.2 mRNA upstream 53712 16641460 ~ 16647513 (-) False si:ch211-207e14.4
XM_026920435.2 mRNA upstream 53712 16641460 ~ 16647419 (-) False si:ch211-207e14.4
XM_026920437.2 mRNA upstream 60075 16647823 ~ 16695031 (-) True fam50a
TU302676 other downstream 753872 15715035 ~ 15820154 (-) False znf512b
XR_003403204.1 other downstream 1086167 15487757 ~ 15487859 (-) True LOC113530990
TU301948 other downstream 1869756 14699272 ~ 14704270 (-) False G255071
XR_004579686.1 other downstream 2423445 14129216 ~ 14150581 (-) False LOC113530423
XR_003403156.2 other upstream 60075 16647823 ~ 16695030 (-) False fam50a
XR_004579669.1 other upstream 225636 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_004579680.1 other upstream 1088817 17676565 ~ 17695598 (-) True LOC117599224
TU303855 other upstream 1305333 17893081 ~ 17913277 (-) False kcng1
XR_004579746.1 other upstream 1697738 18285486 ~ 18300687 (-) False znf217

Expression Profile