RNA id: XM_026920857.2


Basic Information

Item Value
RNA id XM_026920857.2
length 3349
RNA type mRNA
GC content 0.49
exon number 13
gene id nol9
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19822267 ~ 19841123 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCCCCTTTGTACGGTCCATACCGCTTTTCGAGGCTACGCTAGACAACAGCAGgctgtattgtaatatattttctataatattgtagtaatattataatatttttctgcCTTCATGTATGAGCGTTTGCACAAAAGAGCATAAATTAGCGTTAATGTTTGTCTTTTCCGCTGCGTTTGAAGGCTAACGCTAACGCTACAGGACTCAGCCTGCTCACATGGAGTGATCCTAGCTGgtGTTCTTTCACACCGTGAGCCAGTGCCAATGAAAGTTCACAAGCAGTGACCATGAAGGTGCATAAAGTCTCCACTCGCTCCAAACATGAGCATCGAAATGCCACGAAACGCCACACGAAAAACAAATGGCGCACCCACGGGAAGAAAATCCGCCATGTGGATCCCTCCGGCCACAGTCCGAAGCCTTCAACAGCAAAGTTTGAGAATGAGCTTGTTAACAGACAGAAGCCCAAAGTGAAGCGGTTACAGAAGGCTTACGTCAAGGCTGCGACCGTAACATCTGAAGACGGACGTTTATCACAGGCTAAAGGCAAGGCCGTGTCTGCACCCTTCCCTCACGTCCACACCAACGGCGGCACCGAGCTGGAGACGGGCAGTGACTCGGAGGACTCCCAGGACTGGAGGTCTTACGCCAAGAGCGTTCTTCAGAACGGTTCGGAGAAAGAAGCAGGTGAAGGGAACTCGGTTGCAAATCAGTTAGAGGAAGAGGAGGTGTTCGAATACCACGCCCAGTATGACCGCTCCCAGAACCACACAGTGTTAGTCCTGAAGCAAGGccagTCGCTGTGTTTTCGAGGGAAGTGCCTGCTCACGTGCCTGAGCGGTCGCGTGGAAGTGCTGGGCTTCACCATAGAGCAGGGCCAGCAGCCTTATCCGCTCTTCTCACCGTCGTCCCACTGTCCCCTCACCATCAGGGCCATGGCCGACTGCACAGCttcagccaagagcaggaagGAAAGCCGACTGGAGGCCAAGGCCATCGTCCGCAAGTACCTCTTGTCAGAGCCTCGGAAGAGACTGCTGAGTGAGGTGGACGCAGACTCGTGCGTGGTGCTGCTTCAGCCACTGGACACGTCACTCACACGCTTCTTCGGCAGCTTCAGTGAACTCAGCCATCTCTTTGGCCTCAGCTCGaagGAGCTGCACTCTCAGGCTGCTGTGTATAACCCAGCTCTCTCAGCCGTGGGTGTTACAGCGCTAAAAGGTTCCTGTGCACGCGGTCTGGTGGCATCCGACAGCTATAAAGAGGCTCTCAGCAGCCTGCTCAGTGCATGGGAAGGGGATTTTGATCGCTGTCCCATTATTCTCGTGTGTGGGGCCAAAAACTCTGGCAAGTCGACCTTCAACAGACATCTCATCAACAGCCTGCTTAACCAcactgCAAGCGTGGAGTATTTGGAGTGTGATCTTGGCCAGACTGAGTTCACACCTCCCGGGTGTCTCTCCTTAATCACAGTGACTGAGCCACTGCTAGGCCCTCCGTTTACACACCAGCGAGAGCCAGAGCACATGGTGTTTTATGGACAGGCAGACTGCCAATCTGATCTAGACCGCTACCTGGACTCACTCAAATCCCTGTGGAGACAGTACAGCGGAGAGAACCCAGTGATCATTAACACCATGGGATGGGTCAAAGgtCATGGCTTCCAGGTGCTGGTGGACCTCATCCGCTTCTTCTCCGTCACCCATGTGGTGCAGCTGAGCTACGGCGCCACACCTCAGTGCCATACTCTCACCCCCGACTTCCTGCGCTCTGCCCACGGCTGGCACACGCATCCCCCGGCACAGTCGGCCCTGGCAGAGGAACCGGCCAATCAGCTCACAGCGCGGGGTCACCTGCTCCTCAGCGTCCACTCGGAGTTTGAAGGAGCCGGGACCTCCGGGGAAATGCGTCACCAGCGCAGTAACGAGCTGCGTGACCTGGCATTGCTGGGTTACTTCAGCCAGCTACAGTCTGCAGAACCCGGCCCCATCTGCCCCCTGCACTGCTTCACCCCCTACCAGGTGCCCCACTCAGCTATAGCTCTTGGAGTCACACACTGCGATGTGGCTCCCAACCACATCCTGTATGCCGCTAATGCCAGTTTAGTAGCTCTGTGCTGTCTGAGTGAAAAAGTGGCAGGAAGAGGTGGACCTGTGCTGCTGTCTCAAACGCCCATCTGTCAGTGCGTGGGCTTAGGTGTCCTCAGAGGGGTGGACATGGCTCGTGGGCTCTACTTTCTAGTCACCCCAGTGCCTCCTGTGACCCTGAGGCAGGTCAACTGCCTGCTACTAGGGGAGATCACACTGCCTAAAATCCTCCTCACTGTCCAGcATGGTTTTGAAACGGAGCTCCCTTATGTCACCACAGATTACAGCTTTGAGATCACCGGCGCAGGAAAAGTCCACGTTTTCAAAGGGCTCACAAGATCCTGTTTCGTCAAATCTAAAACGAATAACTAAACTCTTGTGTATGGACTTCTCTTTCAGCGAATGATGTTTGTATCACTGTAATTGTTTTATATACCAAATAAAGAGGCTACAGCTGCCACCGAATGTACAGAACGACAGACATTTTGCTTCTTGGATCAGTATACCATCTAAAGACCTGGTGCATGATGGGAACGGTAGTTTTTAGAGTCCTAAGCCTGCGCCTTGCCATATGGAACACGGTTACGATAAAACATTGTTGCCTGacatatttgtgttttctcttctgttttataTTTCCACATATTTCCTAGTATCACTAGTAATAGGTTTGCTTGCATACTGTTCATTTGTCAGTTTGTTTCAGGTAACATTCCCGGACTGTACAGACTGTAAGATATTAAAATgggtttcacttttttttgtcaagaaaGTCTGACTATTTCACTGACTTTTGCAACAAACTTATGAAAGAGTGTGTTTAAACCCCTTGAAGAACGAAAATGACTCAAAACTCTATTTTAATTATCTCCACAAGTGGTTTTGCACATGCTGGTTATAGATAATACAGATGGTGaaaagtgaaaggaaaaaacacaacaaagtcttagtaaggtgttagGCCATGATGTTGTGCCTTAGCATCAATTCTACATGTCTCTTCAACTGTGCTAGAAGGATGAATACTGTTCTTCAGGGTTAACGCAGTGTTCAGGATTAAAGTGACAAGTATTtttaggaaggaaggaaggagagatgAAAAAGGATGTGAATTTAAAAACACCTTAGAAAAGTgttttgataattatttatatactgcATGTTTTGAATTGGTATTAAGTACAAAGCTCCCATTTTTATCCTTTGACATTCAGAAGAGTCAAATGTGAAagagacaacaaaaataaatcgcATTAATCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305265 lncRNA downstream 207588 19611920 ~ 19614679 (-) True G257880
TU305254 lncRNA downstream 231137 19586328 ~ 19591130 (-) True G257870
TU305250 lncRNA downstream 240585 19580212 ~ 19581682 (-) True G257866
TU305220 lncRNA downstream 342535 19479524 ~ 19479732 (-) True G257838
TU305201 lncRNA downstream 356931 19464054 ~ 19465336 (-) True G257819
XR_003403186.2 lncRNA upstream 210814 20051421 ~ 20057906 (-) True LOC113530857
TU305425 lncRNA upstream 288298 20128905 ~ 20129112 (-) True G257980
TU305460 lncRNA upstream 303418 20144025 ~ 20144249 (-) True G258003
XR_003403139.2 lncRNA upstream 473755 20314362 ~ 20331611 (-) True LOC113530344
TU305690 lncRNA upstream 523448 20364055 ~ 20373180 (-) True LOC117599243
XM_026921242.2 mRNA downstream 2532 19803818 ~ 19819735 (-) True galnt6
XM_034311925.1 mRNA downstream 19122 19795054 ~ 19803145 (-) False LOC113530632
XM_026920803.2 mRNA downstream 19123 19795054 ~ 19803144 (-) False LOC113530632
XM_026920801.2 mRNA downstream 19123 19795054 ~ 19803144 (-) True LOC113530632
XM_034311654.1 mRNA downstream 44333 19660633 ~ 19777934 (-) True hspg2
XM_026920753.2 mRNA upstream 9053 19849660 ~ 19863081 (-) True klhl21
XM_026920112.2 mRNA upstream 127619 19968226 ~ 19977788 (-) True olfml3a
XM_026920137.2 mRNA upstream 167974 20008581 ~ 20033502 (-) True c1qtnf12
XM_026921101.2 mRNA upstream 204698 20045305 ~ 20051294 (-) True LOC113530786
XM_026920675.2 mRNA upstream 233253 20073860 ~ 20098987 (-) False nckap5l
TU305224 other downstream 200707 19615527 ~ 19621560 (-) False magi3a
XR_004579690.1 other downstream 435226 19370687 ~ 19387041 (-) False LOC113530570
trnak-uuu_17 other downstream 693731 19128464 ~ 19128536 (-) True trnak-uuu_17
XR_004579689.1 other downstream 757685 18937910 ~ 19064582 (-) False lrp1ab
TU304189 other downstream 1309010 18509155 ~ 18513257 (-) False LOC113530839
XR_003403201.2 other upstream 260392 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other upstream 263167 20103774 ~ 20103911 (-) True LOC113530994
XR_004579656.1 other upstream 269856 20110463 ~ 20119949 (-) False mlh3
TU305550 other upstream 411563 20252170 ~ 20271907 (-) True G258077
TU305957 other upstream 990221 20830828 ~ 20867958 (-) False LOC117599256

Expression Profile