RNA id: XM_026920868.2


Basic Information

Item Value
RNA id XM_026920868.2
length 3386
RNA type mRNA
GC content 0.44
exon number 9
gene id LOC113530663
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11884544 ~ 11892026 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGAATAAAATAGTCAGTTTATCAATTGAATAAGGTTGCTAAGAACTTCCATCAACTAATCAAGTGGCTGCACTACCCAGGTTGTCTGCAAATTAGGAGGTCCAACTAAACAGTTATACTGAACTAGATGCAGTAACACAAGCAAGAGTGTTTTAATGAATGTCGGCATGCCTGTGATTTATATGATAGTTCTATTAATAAGGAATTAAAatcaagtaactgacatttcggacataatatggccaaatattttgtttatttttgtgtgtcagCAGAAacagttcccaaagaagccacagctggatagttTGTTTCATGTTTCCATGCCaatgcacagactgactgaaagTCAGTAGTAAGTTTCAGGGTAACAAACTATTggtagaattggaattttatgtagcgcAAACAGACAAGCAGCGTGAAATATACCACTGTTGTTATACTAAATAGAAGTACTCTTGGGATGTCACTTGACCAGTCAAATTACTGGACCTTATTTAACTGTTGTTTAACAACACTTTAAATCAAAAGTTGAGGAAGTACCATGTTATTCGTGTGGTTTTTCcataatgaaaatgtttacttGCAAGCAAATTCAGTTACCTGTTTTCAGTTAAAACACCTTCAATTGCATGACAGGCATGGTGTTGGATTAGTATTTGCTATCAGCTATGCTTGGAAGTGCCAGCACACTTCATGTTTTTAGTACAGTTTTGCTCCATTACCTCATATGCTGTAAGAGCATCTCAGAAGGTATTGATACTGAGAAGAACCCCTAAATTTAGAAACTTGATTGGCATGAAGGGCTAGGGTCATGTAGATAATTTCAGAAGGGAGAAAGAGGATTGGTCCAAGGCAGGCTCATGTGACTTATCCCACCAGAAAACCCACCAATAGGATTCAGCTGGTAAAGCTGCAGTGAGATTTATAGTTTTGGCTTGGCTACAACAGGGCTCAGGCTCAATGTaaatacaacaaaaagaaaCCTTAGACTACATGTAGGGAGTACTGTATATGTTGGTGGAACCTGTTAACGCTTTGACTGGGGAGGAGTAAAGACAGGAATTGGGTGCTTCAGAATCTTTGGCCCAGGCTTGCATTTTTCACTTCAGGgatccattttctctctcactgtgtgtatgtgactgaTGGGGCGATACATCAGCACAAATCTGGGCACAACCTTTGGGCCACAGAGGTTGCAGTTACTATGTAGGATAAGGAACCTGTTCACTAGGATCAGAGCTTTGTCTCACCTTGCTGGGACTCCTTGTCCCATTAGGCCCCACAGGTCATACTTGAACTGCCACTCCTCGGCCTGTAATTTTGTCTGGAGAATTTCCCTCAAAAGGTCAAAGGAGATACCTCTGAGGACCACCTATACCGGACTGAAAAGCTATGTCCAAGCTTCTCACATGTGTTCCACTTCCAACAGGGAGGCATTTAAACCAGAGGTTCCAGTTAGGGTTTACACTGATAGTAAGGCTAATTTTCAGATGCAGTGGATGCAAATAAGATTTGGAGACTCTTTCAGGCATTTAGCTCAACACATCAATATGTATTTTAAGCAGAAAGAGATGTCTTGTGGTGCTGGTCAGGCTGTATTTATGTCTGCACTACAGAAGCCTCTTACTGGAGTGCAGAAACAAGCACTGACCCAAAATGCTGTTGAGGGCAAAGAGGCTAGAGAGCTTAAACAGGTGCAGTATCCATCCATTAGCCAGTCTGAAGAATCACCTTTGACCTCAGGATATCCGGGACTACAACTGTTTCATATGAGTTCTCTGGTGACCAAATTTGGGGAGAGCTATAACTATGTAGCCAGTCACATAAACTCTGTGTTCTCGAAACAAATCTGTATGGAGGTGCCATCATCCAGAGATATACTTGGAAGAACCAGGACAATATCTAGAAGAGTTGCCAAAAATCAGAGCACAAATATCAAAGAAAATGTGTCTTCAGAAACTGGCCCTACTCACCTTAATGCAGCCACAGTAGATGTTAACAACACTGATGTTTGTAGCTCCTTGGAGGAAGGCTATCTTCATTTTGCACGTCATATAAACCGATACTTCGGTGCAAAAGTGACAGATACTGTAAAGGAATCAGCACATCAGCAAGGCAAGGGCTCAGATACGCACCCATTTTCATACTCTCTGGACCATCAGAAAAGTTGTGAAGCATCACGGGACACTCTTCCCCTCCGTCCTAAAGCTCTTTTCCATATGAGCAACCTCACCACACACTTTGGGGAAAATTATGCCTATATGGCCACTCACATCAATCAGTATTTCAAAAGTTCTGTAGCTGCAGATgaggaaatggagagagagcCATACAGTGGACAATCTGGAAGTACTCTGGAGAAACATACATCCTTTTTCCAGGGCCTTTTAAACCCCTTTGGTATTCAAAGCCTTTTGGGGAGCTACCTGGGAAGGGCTTCTAGTAGTCCTACCACTGTAGACCCTGCCCTGGACAGAGTGGCAATAAGAAAACAGCTGGCTGAGGACAGAACTCGAGTTCTACTGGGCAAGCTGGAGAAAGCTAGGGCACGTTCATGTATCAGCTCCTGTGTAGAGGAGTTGAACGCTCACCTAATTCTCAACCCAGCGTGCAAGAATGTTGTGTGGCAGGAAAAATCAGCAATGCATATACTGAAGCATCGACGGCTATTTTGGATGGATAAGAAACTTCAAGCTGCCATTAGAGAAACTCTAGCCCTGATTGGCTATGTGGATCCACTCAAAGGTTGGGGGATACGAGTGCTGTCCATCGATGGTGGTGGCACCAGAGGGGTAGTTCCACTGCAGGTACTAAAACAGCTAGAGGCTCGGACAGGAAAACGGGTTTATCAGCTCTTTGACTATGTTTGTGGAGTGAGCACAGGAGCAGTTTTGGCCTTCATGTTGGCTTTGGCTCATTTCTCGATAGAGGAGTGTGAGGAAATGTACAGACGTTTTGGGTCAGATGTTTTCAGACAGAACCCTCTGGTTGGCACTGTGAAAATGGGCTGGACTCACTCATACTACAACACAGAGACATGGGAGATGATTCTGAAGGAGAAAATAGGTGACCAGCTCCTTGTTAGAACAGCCAGAGATGAGAGGAGTCCTAAGGACGCCTCAGCCGTTACGCGGGTGGATCTGGGTACCAGCTTTGGCAGGCAGTACGAGCTTCTTCTGCTGCTCCAGGATACTTCCAGGAGTTTCCCCTATATAATGACATACATCAGGATGGAGGTATCATTCTGAACAATCCCTGTGCTCTTGCTGTCCATGAAAGCCGGCTACTCTGGCCCAGTCAGCCCTTCCAGTGTGTGCTGTCTCTAGGAACTGGTCGTTATGATAATGCCAGAAGGGGGCCTGCCACGTCCACTAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300144 lncRNA downstream 27062 11841041 ~ 11859346 (-) False LOC113530816
TU300151 lncRNA downstream 108475 11777718 ~ 11777933 (-) True G253509
TU300120 lncRNA downstream 128478 11755205 ~ 11757930 (-) True G253492
TU300131 lncRNA downstream 142250 11743950 ~ 11744158 (-) True G253499
TU300122 lncRNA downstream 171655 11713177 ~ 11714753 (-) True G253494
TU300190 lncRNA upstream 12251 11904277 ~ 11904686 (-) True G253538
XR_003403159.2 lncRNA upstream 251607 12143633 ~ 12150945 (-) True LOC113530483
TU300415 lncRNA upstream 251688 12143714 ~ 12150861 (-) False LOC113530483
TU300430 lncRNA upstream 325398 12217424 ~ 12217744 (-) True G253749
TU300547 lncRNA upstream 500337 12392363 ~ 12393653 (-) True G253843
XM_026921151.2 mRNA downstream 2385 11863151 ~ 11884023 (-) False nfascb
XM_026921148.2 mRNA downstream 2385 11863151 ~ 11884023 (-) False nfascb
XM_026921150.2 mRNA downstream 4548 11863151 ~ 11881860 (-) False nfascb
XM_026921149.2 mRNA downstream 4548 11863151 ~ 11881860 (-) True nfascb
XM_034311549.1 mRNA downstream 7558 11863151 ~ 11878850 (-) False nfascb
XM_026920873.2 mRNA upstream 125 11892151 ~ 11900392 (-) False naca
XM_026920874.2 mRNA upstream 125 11892151 ~ 11900267 (-) False naca
XM_034312069.1 mRNA upstream 2452 11894478 ~ 11900462 (-) False naca
XM_034312070.1 mRNA upstream 2452 11894478 ~ 11900358 (-) True naca
XM_026920875.2 mRNA upstream 15900 11907926 ~ 11915984 (-) True prim1
TU300077 other downstream 317878 11556887 ~ 11568530 (-) False avpr2ab
TU299993 other downstream 423702 11456021 ~ 11462706 (-) False LOC113530309
TU299994 other downstream 423702 11456021 ~ 11462706 (-) True LOC113530309
trnan-guu_24 other downstream 613005 11273330 ~ 11273403 (-) True trnan-guu_24
trnae-uuc_4 other downstream 627294 11259043 ~ 11259114 (-) True trnae-uuc_4
XR_003403206.1 other upstream 322 11892348 ~ 11892420 (-) True LOC113530992
XR_003403207.1 other upstream 901 11892927 ~ 11893002 (-) True LOC113530993
trnae-cuc_33 other upstream 249076 12141102 ~ 12141173 (-) True trnae-cuc_33
TU300417 other upstream 266746 12158772 ~ 12159360 (-) False ptk6b
XR_004579685.1 other upstream 2237190 14129216 ~ 14150581 (-) False LOC113530423

Expression Profile