RNA id: XM_034312069.1


Basic Information

Item Value
RNA id XM_034312069.1
length 1858
RNA type mRNA
GC content 0.52
exon number 3
gene id naca
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11892151 ~ 11900462 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAAGAAGCAGTGACTTCCTGTTGATGTCATTGTGAACCGGAAAAACAATGTTGATGTGAACGTGACGCAAAGGtcaggatctctctctctcagccatcTTGGACCCCGAGCTCGAACCTAcCAACAATGCCAGGTGAAGCCACAGAAACTGTCCCAGTGACGGAGCAGGAAATGCAGCAGCCCCAAGTGGAGACGGctgctgctgcttcagTTCCTGCTGTCTCTCAGCCAAAGACTAAAGGGGCTAAGGCTGGCTCATCTCCACACTCTTCTGCCCCCAAGCCTGTTCCTGTGGGCCGCCGGAAGCGCTCCTCGCTTTCcgcttcttcctcttctcccaCTTCACCCAAATCAGCCTCTGGCCCTCGAGCCACCCCACCTTGTTCTCCACTAGCATCTCCTACAGCTCGCTCCCCAGGTGCAGGGAAACCTGAGACAGTTGTTCCCAAGGTTGTGAAGGCTGGTAAACAAGCAAAACCCAAGaaagcagattttaaaattgCTGAACCTCAGCAGGCAACCCTACCTTCTGCTACACCCTCAGAGGCTAAAACAGCACATGAGTCTTCCCCAACCTCTAACAAGGTGGCTAATATACCAGTGGAGGGTGTAGCTACTGCCTCTGTATGTCCTAAAGCTGCTGGTGTAGCTCCAGTGGAGGCAAAACTAGTAGAAGGTGCAGGCCCTGCAGCTGACTCTCTTCAATGTACCACTGATTCTCCAGTGAAGGCAAAACAGGAGAAGGGTGCAGCAGCTGCTCCAGTGAAAGCTGAAGCACCTGCACTCGCTTCTGATAAAGATGTCCCAGCTCCAGTGGAAGCAAAACCAGAGAAAGTTGAAGCAACTACCTCAGCTTCAGTGGAGGTAAAACCAACAAAAGGTGCAGGCCCTACTGTAGCTTCTCCTAAAGGTACTATTGCTGCTCCAGGAAAGGTAAACCAGGTGAAAGGTGCTGCAAAAGTTGTCCCAGCTCCAGTGGAGGCAAAACCAGTGAAGGGTGAAGTAGTTGCCCCAGCCGCAATTCCAGTTGATGTGATGCTGGTGAAGGGTCCTGCACCAGCCTCAGCTAAAGATGTTGCCCCAGCTCCAGTGAAGACAAAACTACTGAAGGACGAAGCTGCTGCCCCAACTCCAGTTGATGTGCTGCAGGTGAAAAGTGTTGCACCTGCACCAGCCACTTCTAATGTTGCTGTCCCTGCCCCAGTGGGTGCAAAACCATTAGAGGGTGAAGCACCTACTCCAGTATCTCCTAAAACTACTGTAGCTCCTGAGGCTTTTAAAGTAGTTTCCAAGTCAGCTGCCCACGCACCCAAATCATATTCTGAGGTTGTGGCATGTAGCCCACCCAAAGTACCAGAAATCCCGAAGGTTGTTCATGAGACCCCAGTAGCACCTAAGGTGCCAGAAGTCCCAAAGGCTCCTGCAGTTGTTACAGAAACCCCGAAGAGTGCTGAAGTACCCAAAGCTGCTCCTGAATCTCCAAAGGCTCAGCCTGTACCTGCCTTATCTCCAGTGCAAAAAGCAAAGTCAGCTCCAGCTACTGCTTCTAAAGTAAAGGCAGAGGCCCCCAAAAGGAGCCAAGCGTTGCTCCCTCTACTGTTCTGGCAGCAACTCCTGAGTCTTCCATTTCACctctggaggaggaggacgacCTCCCTCCACTTATTCCACCTGAGAAGCCTGCCACAATGCCTGTTTTCCAACCCCAACCTGTGGTCGAGGCTTCACCTAAAGTAGACCCTGTAGTTAAAGCTGTTGTGCCGCCAGCTGGTCCCAAAGCCACTGTTACACCTGCTAAATCTCAGCCTGACCCTACACCAGTAAAAGCCCCATCCAAACCGGAACCAGTAATCAAGA

Function

GO:

id name namespace
GO:0030239 myofibril assembly biological_process
GO:0006810 transport biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300144 lncRNA downstream 35132 11841041 ~ 11859346 (-) False LOC113530816
TU300151 lncRNA downstream 116545 11777718 ~ 11777933 (-) True G253509
TU300120 lncRNA downstream 136548 11755205 ~ 11757930 (-) True G253492
TU300131 lncRNA downstream 150320 11743950 ~ 11744158 (-) True G253499
TU300122 lncRNA downstream 179725 11713177 ~ 11714753 (-) True G253494
TU300190 lncRNA upstream 3815 11904277 ~ 11904686 (-) True G253538
XR_003403159.2 lncRNA upstream 243171 12143633 ~ 12150945 (-) True LOC113530483
TU300415 lncRNA upstream 243252 12143714 ~ 12150861 (-) False LOC113530483
TU300430 lncRNA upstream 316962 12217424 ~ 12217744 (-) True G253749
TU300547 lncRNA upstream 491901 12392363 ~ 12393653 (-) True G253843
XM_034312068.1 mRNA downstream 2452 11884544 ~ 11892026 (-) False LOC113530663
XM_034312067.1 mRNA downstream 2452 11884544 ~ 11892026 (-) False LOC113530663
XM_026920866.2 mRNA downstream 2452 11884544 ~ 11892026 (-) True LOC113530663
XM_026920868.2 mRNA downstream 2452 11886408 ~ 11892026 (-) False LOC113530663
XM_034311549.1 mRNA downstream 15628 11863151 ~ 11878850 (-) False nfascb
XM_026920875.2 mRNA upstream 7464 11907926 ~ 11915984 (-) True prim1
XM_026920289.2 mRNA upstream 26444 11926906 ~ 11932495 (-) True rnd1a
XM_026920758.2 mRNA upstream 168127 12068589 ~ 12083533 (-) True slc17a9b
XM_026920760.2 mRNA upstream 183523 12083985 ~ 12087721 (-) True gid8b
XM_026920538.2 mRNA upstream 255266 12155728 ~ 12167795 (-) False ptk6b
XR_003403207.1 other downstream 1476 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 2058 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 325948 11556887 ~ 11568530 (-) False avpr2ab
TU299993 other downstream 431772 11456021 ~ 11462706 (-) False LOC113530309
TU299994 other downstream 431772 11456021 ~ 11462706 (-) True LOC113530309
trnae-cuc_33 other upstream 240640 12141102 ~ 12141173 (-) True trnae-cuc_33
TU300417 other upstream 258310 12158772 ~ 12159360 (-) False ptk6b
XR_004579685.1 other upstream 2228754 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 2228754 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 2228754 14129216 ~ 14150581 (-) True LOC113530423

Expression Profile