RNA id: XM_026920875.2


Basic Information

Item Value
RNA id XM_026920875.2
length 1777
RNA type mRNA
GC content 0.44
exon number 13
gene id prim1
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11907926 ~ 11915984 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAAAAAACTCACAACTTCTACTCACACACATTTCGTCACTTCCTGATATTTCCCGCGCTGGTTTTTGATACAGCTGTCACTGTGCCACTGAGCTGCAGTAGTTTAATTACTAAACAATGCCGACCTCCGACTATGACCCTGCTTGTTTACCGGATTTGTTGCCACTTTATTACCGCCGACTGTTTCCATACTCACAGTACTATCGGTGGCTAAGCTACGGCGGCGTGTCCAAGAACTACTTCCAGAACCGCGAGTTCTCATTCACTCTCAAAGATGACATCTACGTTCGGTACCAGTCGTTCAGCACCCAGAGTGAACTGGAGAAGGAGATGCAGAAAATGAATCCGTATAAGATTGACATTGGTGCAGTTTACAGCCACAGGCCCAGCCAACACAACACGGTGAAGTCTGGAACGTTTCAGGCACTGGAGAAAGAGCTGGTGTTTGATATCGACATGACTGACTatgatgatgtcagaagctGCTGCAGtgctGCAGATATTTGCTCCAAGTGCTGGACCCTGATGACCATCGCCATTCGTATTCTGGATCGGGCACTGAGAGAGGACTTTGGCTTCCATCACCTCCTGTGGGTGTACTCAGGCAGGAGAGGAGTGCATTGCTGGGTTTGTGACGAAGCCGCCAGGAAGCTGTCAGTGGCGGCTCGTTCGGCTGTGGCCGAGTACCTCAGCTTAGTCAAGGGTGGCGAAGAGACTGTGAGGAAAGTTGTGCTGTCAGAGCCTATTCACCCTTTCATCAGCCAGTCTCTTATTGTAGTAGAGCACTACTTCCCTCAGTACGCAATTGTTGGACAGGAGCTGTTGGGCAGTAAAGCAAGTGTTGACAAAGTGCTCAGCCTATTACCTGAAGATGTCAGGAAGGAGCTATTAAACACTTACCAGACGGAGAAGAATCCAATGAAGCGCTGGGAACAACTAAGGTCTGCAGTGCACCAGAAAAGGGCTACCAGTAAGAAGGGAGCTCAGTACTTTGATAAGGAGATCATGCTGCAGTACTGCTACCCACGCCTGGATGTTAATGTCAGCAAAGGAGTCAACCATTTACTGAAAAGTCCATTTAGTGTCCATCCGAAAACAGGTCGAATTTCTGTACCAATTGACTTGAAAAATCTGGACAAATTCGACCCCTTCGATGTTCCTACAATCAGCCTTATCTGTGAAGAGCTTGACAAACCCCTAGctgctgaggaggaggaagaggagataaAGGATAAAGCAAATGAAACGGAACCTGGTGAACGGCGCAAAATCAGAGATTACAAGCAGACTAGTCTGGGCAAGTATGTGAAGCTCTTTGATCAGTTTCTGGATGCTATGGCTCGTTCTAGAAAAGGAGAGATGCTGAAGAAAAGTGATCTCCAGAAAGAATTTTAATGAGCCAGTGATGGTCCAAAACAACTATTGATGGTCAACTAAGAAATGAGAACTTACTACCTTACTTGATCGTTTTTCTACAACAGAACAGAAATTGAATCAGTTTGCTATAAAGTACATTTGGATGTGTACTTTACCTGGATTCTTGAATGTTTGACATTACTGTAGAATTATCATCACAGAAAAATTAATGATCTGAAAACAGAAGGACACCTTTCATTTTCTGAATTTTGACACTGAACAGATTTTGTACTGTAGAGAAATGTCCTTCTGGTctgttaaaatgtgtttttttttttttaccaagaaatattaaaagtatTGTATATTATTTGCTAGCACATATGCAggaaacacaataaatatagcATTTAATATTGAA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:1990077 primosome complex cellular_component
GO:0003896 DNA primase activity molecular_function

KEGG:

id description
K02684 PRI1; DNA primase small subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300190 lncRNA downstream 3240 11904277 ~ 11904686 (-) True G253538
TU300144 lncRNA downstream 48580 11841041 ~ 11859346 (-) False LOC113530816
TU300151 lncRNA downstream 129993 11777718 ~ 11777933 (-) True G253509
TU300120 lncRNA downstream 149996 11755205 ~ 11757930 (-) True G253492
TU300131 lncRNA downstream 163768 11743950 ~ 11744158 (-) True G253499
XR_003403159.2 lncRNA upstream 227649 12143633 ~ 12150945 (-) True LOC113530483
TU300415 lncRNA upstream 227730 12143714 ~ 12150861 (-) False LOC113530483
TU300430 lncRNA upstream 301440 12217424 ~ 12217744 (-) True G253749
TU300547 lncRNA upstream 476379 12392363 ~ 12393653 (-) True G253843
XR_003403193.2 lncRNA upstream 690557 12606541 ~ 12607682 (-) True LOC113530910
XM_034312069.1 mRNA downstream 7464 11894478 ~ 11900462 (-) False naca
XM_026920873.2 mRNA downstream 7534 11892151 ~ 11900392 (-) False naca
XM_034312070.1 mRNA downstream 7568 11894478 ~ 11900358 (-) True naca
XM_026920874.2 mRNA downstream 7659 11892151 ~ 11900267 (-) False naca
XM_034312068.1 mRNA downstream 15900 11884544 ~ 11892026 (-) False LOC113530663
XM_026920289.2 mRNA upstream 10922 11926906 ~ 11932495 (-) True rnd1a
XM_026920758.2 mRNA upstream 152605 12068589 ~ 12083533 (-) True slc17a9b
XM_026920760.2 mRNA upstream 168001 12083985 ~ 12087721 (-) True gid8b
XM_026920538.2 mRNA upstream 239744 12155728 ~ 12167795 (-) False ptk6b
XM_026920537.2 mRNA upstream 239744 12155728 ~ 12167792 (-) True ptk6b
XR_003403207.1 other downstream 14924 11892927 ~ 11893002 (-) True LOC113530993
XR_003403206.1 other downstream 15506 11892348 ~ 11892420 (-) True LOC113530992
TU300077 other downstream 339396 11556887 ~ 11568530 (-) False avpr2ab
TU299993 other downstream 445220 11456021 ~ 11462706 (-) False LOC113530309
trnae-cuc_33 other upstream 225118 12141102 ~ 12141173 (-) True trnae-cuc_33
TU300417 other upstream 242788 12158772 ~ 12159360 (-) False ptk6b
XR_004579685.1 other upstream 2213232 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other upstream 2213232 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other upstream 2213232 14129216 ~ 14150581 (-) True LOC113530423

Expression Profile