RNA id: XM_026920876.2


Basic Information

Item Value
RNA id XM_026920876.2
length 3617
RNA type mRNA
GC content 0.43
exon number 14
gene id csad
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20567789 ~ 20577934 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAGGTTTAAGTGCGACTTCAGAGCACACAGAGGACTGCAGAGATGAGTTCAACCGTTACTATAGAGCACACTGTGAGCAAAGTCACAAATGGCCACCTTCATGTGGATGAAGCTGAACTGGACCGTTCAGTTGGTGAGCAGTTCCTCTCCGAGGCTTTCAAAGTGATCCTGGAGGAAGCGGTTCATAAGGCTACCGACGTGAAGGAAAAGGTGTGTGAGTGGAAGGACCCTGACCAACTGAGGGCTCTTTTGGACTTGGAGCTGAGAGACCATGGGGAATCTAATGAAAAGTTGCTGCAGAGAGTACATGATGTCGCCAAATACAGTGTGAAAACCAATCACCCTCGCTTCTTCAATCAGCTGTTCACTGGAGTGGACTACCATGCCCTGACTGGACGCCTCCTCACAGAGACACTCAACACCAGTCAGTACACCTATGAGGTGGCTCCGGTCTTTGTTCTGATGGAGGATGTGGTTCTCCGCAGTCTGCGCTCCCTAGTGGGCTGGTCCGAGGGGGATGGCATATTCTGCCCAGGAGGCTCTATTTCTAACATGTATGCCATGAATGTGGCTCGATATTGGGCGTTTCCGCAGGTGAAGACTCAAGGCCTGTGGTCTGTCCCACGTCTGGCTGTGTTCACATCACAGGAGAGCCACTATTCGATTAAAAAGTCGGCTGCCTTCCTAGGTATCGGGACGGAAAACGTTTACCACGTGAAAGTGGACGAAAGTGGCAGAATGATCCCAGAAGACCTTGAAGCTAAAATTGTTCATGCCAAATCACAAGGTGCTTACCCGTTCTTTGTCAACGCTACAGCTGGCTCCACCGTACAAGGAGCCTTTGACCCTCTGGAGAGCATCGCTGACATAACTGAGAGGAACGGAATGTGGATGCACGTTGATGCCGCTTGGGGAGGAAGTGTGCTGTTTTCcaagaaacacaaacatctAATAGCAGGAATTGAAAGGGCCAACTCTCTAACCTGGAACCCACATAAAATGCTGACGACTGGCCTTCAGTGCTCCGTTATTTTGCTGAGAGACACAACGAACCTGCTGATGCACTGCTACTGCGCCAACGCCACCTACTTGTTTCAGCAAGACAAGTTCTACGACACACATCTGGACACCGGGGATAAGTCCATCCAGTGTGGACGCAAGGTGGATTGTCTGAAACTGTGGCTCATGTGGAAAGCTATCGGCTCGCAGGGCCTCGCTGACCGGGTCGACAAGGCTTTCGCCAATACAAgGTATCTTGTTGAGGAGATGAAGAAAAGAGCAGGGTTTCAGCTGGTCTCTGAGCCGCAGTTTGTGAACGTGTGCTTCTGGTTTGTGCCACCCAGCCTGAGAGGGAAGGAGAATGACACAGATTACCAGGACAAATTAGCAAAGGTGGCACCGCTCATCAAGGAACGCATGATGAAACATGGCTCTATGATGGTGGGTTATCAGCCTCTGGATGGTCGAGTCAATTTTTTCCGCATGGTCGTCCTTTCTACCCAGCTGCAGCACAGCGACTTGGACTTCTTCCTCGACGAGATTGAGAGGCTGGGGAAAGATCTGTAAATGAGCTCTGGGTGCTGTTCATCATTCGTTCTTTAGTCATTGTCCATCATTGTTCTTTCCAGAGGCATTCTTTAAGGTTGCTCTCTATCGCCTTTTGATTTTCTTAGACAAGCAGTGAGTTTCataaatcagtttgtaatttagCTGGAACAGCACTGGCGCTTTGCTGATAAGATTGGGGACCACTGACTTAGAACTGCTAAATGAAGTTTCTTAGAAACATTGCTGGGGCTTCTATTattcatcacttcctgttcaaccttctttcattcttcttttctgGCTGTAGACTTCGTTTATCTTCCAGACTTCTTCCAACTTTTGACTCGAAGCAGACCTCTTCCTGTGCAGGATTAGATTAGactgcttttgtgtttgttctttcgttctttctttctttccttctttctagATTCCAGGTTCCTCACAGTCCTTCAGTCATGTGGCTACTTTTTCAATATTTAAgcatcattttataaataatttctacatttttacagCCACTCCTTTTTGCATCTTAATTTACATCAAACACCTATCCCTGCAGTTTTACTGCAACCCTTTTCATTCTTGTCAACATGATAAAAATTGAGTGTAGCAATAGGtcaattttattacttttattttttaatgaagaaaaaggaGAGCTTTTCTAGCTTTTCTTATAGTCAGTAGCCTACTGACAATAATGTTGTAATATCAAGAACTTATGTGTGCTAGATCAGCTAAATGGACGGTTTATTAGGTACCGCTGTCATACTGGTGCACTTTATAGATATAATATCACTGATGGACAGAGAAGAGGGGGCTGAAAATGGTtcatagcaacagatgggctacagatAGGAATTGTTCATCTATAGGGTAGTTGTACCTGATGAATGTTGGTAAAACTGGCTATAATAAACTGACAACTGAATGTATATTAATGCAACGAATCAATTTATGTGGCTGCAACAGAAATTGCTGGGTTAGAATAAATTGGTCCCTGGTGTCTAGTAGCTATGTAAGTCAGAATGTAAACCCATTGTAATGAATTAGTTctagttgtttttttgtaagcATCAACTTTTGATACATAAGTGTGTTTGAATACATctgaattttcttcttcttttacttacaggaaaaaaatccaccctgaacaactcaCTATCAATATTTATAACGTATGATCTTTAAcatatgtacaatatttttaacatatgaTCTTCCTTTGtccaaaagatttattttatgataaatTCTGAGATGACTTTTTTGGATTAACTTCAGTTTGGTCTGTTTTCCCTATAGCTAAAGGTTTCCCGTGTTACCCATAATGAATTCCAGTGAATTCACCTCTACCGAAAAAGggcgatgcagcagcgctttagtgctttattctggccagctctctcacctcctcacctgtacactctgctcaaacagacctttcatgctaataccaccatcaactCCATCGTACTCGTCATCATAGATTTTTAAATTGCAGAGCCGAGTTTCTGCCGTAACTCCAGGTGCAAACACGTCTTATTAGCTTGCATCTATTGCATTCTGGAGTCCAACATTTGCTGTTCCAACTAATTCTACACGAGACTTCTCATTAATGACATTGAACATTGCTAAAagtggtgagtgagaaaagaagctcttcgTCCATTATGTctgagataatttttttttccctattaaatgccattgtaactgtgtTAGCGATGTTCCCctgtgacaatagtgcagcacACAATCacaacttctcacaggaataaccgACAAAATACCACCAGACTCACTTAGAACatcagaagattttttttcatataaacatatatgatgtgtttcagggtggaattTTCCTTAGACTGTCTTAGACTGTCTGTCAGACTTTAACGTCCTATTGTGTAGACTTGTCTTAATGAGAAACACAAGAGGGCACATGCTACTGTTTGTAGTCAACTTAATTTATCaatgaatgacatttttttttcatggacaAAGTACAAGTGTCAACATGTCAGATTGACAATAAAATGGTTTGTGAACTAGA

Function

GO:

id name namespace
GO:0042412 taurine biosynthetic process biological_process
GO:0007507 heart development biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
K18966 GADL1, CSAD; sulfinoalanine decarboxylase / aspartate 1-decarboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305751 lncRNA downstream 44144 20522552 ~ 20523645 (-) True G258242
TU305676 lncRNA downstream 47586 20518425 ~ 20520203 (-) False nfe2
TU305681 lncRNA downstream 51076 20511166 ~ 20516713 (-) True G258189
TU305741 lncRNA downstream 80379 20470193 ~ 20487410 (-) True G258232
TU305692 lncRNA downstream 165529 20376338 ~ 20402260 (-) True G258198
TU305773 lncRNA upstream 11824 20589758 ~ 20593161 (-) True G258258
TU305785 lncRNA upstream 32377 20610311 ~ 20611059 (-) True G258268
TU305953 lncRNA upstream 198215 20776149 ~ 20776709 (-) True G258411
TU305972 lncRNA upstream 305865 20883799 ~ 20884095 (-) True G258424
TU305980 lncRNA upstream 323344 20901278 ~ 20902757 (-) True G258427
XM_026921339.2 mRNA downstream 1192 20560115 ~ 20566597 (-) False znf740b
XM_034312135.1 mRNA downstream 1193 20560115 ~ 20566596 (-) False znf740b
XM_026921338.2 mRNA downstream 1194 20557604 ~ 20566595 (-) True znf740b
XM_034312136.1 mRNA downstream 1474 20560115 ~ 20566315 (-) False znf740b
XM_026920986.2 mRNA downstream 42325 20519345 ~ 20525464 (-) False nfe2
XM_026920972.2 mRNA upstream 2673 20580607 ~ 20586424 (-) True zgc:174906
XM_026920755.2 mRNA upstream 35734 20613668 ~ 20658178 (-) True spryd3
XM_026920756.2 mRNA upstream 38701 20616635 ~ 20658178 (-) False spryd3
XM_026920757.2 mRNA upstream 38701 20616635 ~ 20655577 (-) False spryd3
XM_026920372.2 mRNA upstream 113872 20691806 ~ 20698192 (-) False LOC113530420
TU305550 other downstream 295882 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 447840 20110463 ~ 20119949 (-) False mlh3
XR_003403201.2 other downstream 458579 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other downstream 463878 20103774 ~ 20103911 (-) True LOC113530994
TU305224 other downstream 946229 19615527 ~ 19621560 (-) False magi3a
TU305957 other upstream 252894 20830828 ~ 20867958 (-) False LOC117599256
TU306159 other upstream 591052 21168986 ~ 21169698 (-) True G258580
trnaq-uug_7 other upstream 776692 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579748.1 other upstream 1351241 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 1868096 22446030 ~ 22449427 (-) True G259306

Expression Profile