RNA id: XM_026920888.2


Basic Information

Item Value
RNA id XM_026920888.2
length 2701
RNA type mRNA
GC content 0.46
exon number 18
gene id rnf207b
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10003686 ~ 10015983 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTGGATCCCTGGTTCTCCTGACGTCAAGGCCAGCCCTCTGTCTAGGCAGGCTGACAAACCCTCTGCATGGCTTTCATTCCAGCCGCAGACAGCAGCTAGGACACCAGCAAGATGTCTGGAGGAATCTTCTCTCCTTTGGATAAACTTTTCGACCCAGACAGTGCAAACTGCCACCCCTTGGTGTGCCACTTGTGCCGTGAGCAGTATGAGCATCCGTGCCTACTGGACTGTTACCACACTTTCTGTGCCAGCTGCCTGCGTGGTAGAGCTGTGGACAGCCGGCTCACATGCCCCCTCTGTGGGCACCAGTCTATTGTGAAAGGGGTGAATGCACTGCCTCCAGAGGACCGTCTGCTGAAGTTCTTGGTGGATAATTCTGCGGACAGCGAGGAAACCGTGCAGTGTGCCAACTGTGACTGGGAGTGCAAGAAACAGGATGTGGATGCAATGTATTATTGCAACACTTGCAACCAGCCCCTGTGTGGAAACTGCAGAGAAGCCACCCACAAGGCCAAGATGTTCTCACGCCATGAAATTGTTTCCCTGGCCAAGCGCACCAAGGAAGCCCACAAAAAGTGTGCCCTCCATGAAGAACTATACATCATGTTCTCTACGGAGAAGAAGTCTATGCTTTGCATCAACTGTTTCAGAGACATGCCAGTGGAGAGTAGAGCGCACTGCATTGATATTGAGACAGCCTATATGCAAGGCTGTGAAAAACTGGACCAAGCCGTTTTAGCTGTGAAGGAGCTCCAGACATCAGCACGAGAAGCCATTGTTCTGCTGAAAGCTATGATTGGAGAAGTCAGGGCCAATGTGGATGAGGAGGAGGGTGCAATCTGTACCCTTTTCAACAGCATGCAGGAAAAActagcagagagaaagaagattCTACTTAAAGCAGCTCAAAGCCAGCATGAGGAGAAGGAACGAGCTTTTAAAGAGCAGCTGTCACACCTGGCTGCACTGCTGCCGACTCTCCAGGTCCATCTGGTTACGTGCTCTGCTTTCCTTAGTTCAGCAAATAAATTTGAGTTTCTAGACATGGGTTATCAACTGATGGAGAGGCTGAAGAAGATTGTAAAGCTGCCTCACAGACTGAGGCCATCGCAGAGCAGTAAGataaacacagagtACCGGTCTGAATTCGCCCGCTGTCTGGAGCCCCTGTTACTTCTGGGTCAGCGACGCTCAGTGTCCACGGCAGGCAGCGTCTCAGGACTGGGCAACAGCGGTGGACTACTGCCATCTGTGAGCTGTCACTCCCCAACAGGCGGACATATGATGCTAGATTCCTCAGTGGTGCGAAAGCCCACTTCTCACCGCTACATCAGCACTAAAGTCCTCCTGGCTGAGGGTGGGGAGAGTCCCTTCATGGAGCACTGCAGAAATTATGAGAACAGCTACAAGAATTTGCAGACAGAAATCCAGAAGCTTAAGGACCAGGTGCAGGAGATTCACAGAGACCTGACTAAACATCATTCCCTCATAAAGACAGACACCATGAGCGAGATCCTGGAAAGGTCTCTGGAGATGGACGGTGAGATCTCAACAGAATACACATCAGTTGAGATGATGAGGGCCATGTTTGAGGAGATCTGGGAGGAGACGTACCAAAGGGTGGCAAACGAGCAAGAAATTTATGAAGCACAACTTCATGACTTAGTTCAGTTAAAGCAAGAGAATTCCTACCTGACAACTATTGCTCGGCAAATAGGCCCTTACATCCGATCCATAGCGAAGGTGAAGGAGCGCCTAGAACCCAGCAGGCTCAAGGAGCCAAAGGAGCTTAAAGATGACCGAACTGAGACTATGCTGAAAATTTATGAGGACAGCAGCATGGCAGCTGATACCCAGCACAGCAATGAACTAACATGTGCTCATGAAGACTATCACACTCTGAGCCTATCCGATGACTCCAATCTCAAAAGCAAGGACCTGTACAGGCTGAACAAGCAGAAATGCGCCACTGATACGAGCCACTGTATCCCTGTTAAACCACAACTCAGCTGATTAAGCAGACCGACAACTCCCTTGACTATATGTAGTACTTGTGAATACAAGACAATAGATAAGGCATTGCTGATGTTTAACATGCAATTGATCTGCTTTGGGGTGCactaattaaaagaaaatcaaaacaaagtcaaatattaaatatattattcatacaCTGTCTTTATATTAAGTGTTTATTTCAGAGGTTTGTAGTAGTTTTCTATGCTCAGTGTCATAATCATGAATAATTATACAGTTCAGTTTCCTTCCCATTTGTCTTACTGTAATACTTATGTACTGCAACTTGCCATCCTGCTGTACATGAATGAAACCTTTATGTTTGACAATTAATAGAAGCTGTTACGGTGGCCATTCACTGAAAAGTGCAACAAATCCTACTTCCTGTCATCCAATGAAGCTAGTTCATGTTGAAAATGAAGGatataaagatgaataaatggcCCTGGATGTGGCTGAATGTGTGTAATCAATCAAATGCATTATTTGATTTAGTTAAATGGACTGGAAGGGTTGGTGAAAATATTGACATCATGATAAAATGAGAACAGAACCAGAAGCTAACCAAAATACATGCAATGCATGGAAGTTGTAGAACATCACAAACTTGTCCATGTGTGTTGGAACTAATAAGGTTCTCTTGCTGATTTTGTGTATCCAGTGTGCCAATAAATACATCTGTTA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298668 lncRNA upstream 2238 9998684 ~ 10001448 (+) True G252336
XR_004579703.1 lncRNA upstream 56754 9944562 ~ 9946932 (+) True LOC117599238
TU298408 lncRNA upstream 273631 9708095 ~ 9730055 (+) True G252116
TU298391 lncRNA upstream 347293 9654882 ~ 9656393 (+) True G252102
TU298258 lncRNA upstream 460046 9542129 ~ 9543640 (+) True G251988
TU298760 lncRNA downstream 148725 10164708 ~ 10165255 (+) True G252389
TU298798 lncRNA downstream 150566 10166549 ~ 10166791 (+) True G252422
TU299103 lncRNA downstream 524464 10540447 ~ 10540656 (+) True G252674
TU299104 lncRNA downstream 525287 10541270 ~ 10541479 (+) True G252675
TU299087 lncRNA downstream 604666 10620649 ~ 10623909 (+) True G252665
XM_026921280.2 mRNA upstream 5827 9986582 ~ 9997859 (+) False rcc2
XM_034312088.1 mRNA upstream 5827 9986916 ~ 9997859 (+) False rcc2
XM_026921278.2 mRNA upstream 5827 9986919 ~ 9997859 (+) True rcc2
XM_026920748.2 mRNA upstream 83562 9873011 ~ 9920124 (+) True vps13d
XM_026921227.2 mRNA upstream 136609 9856373 ~ 9867077 (+) True lrrc38a
XM_026921160.2 mRNA downstream 15337 10031320 ~ 10032702 (+) True LOC113530819
XM_026921173.2 mRNA downstream 25785 10041768 ~ 10043303 (+) True LOC113530826
XM_026921034.2 mRNA downstream 38840 10054823 ~ 10056095 (+) True her12
XM_026920573.2 mRNA downstream 136338 10152321 ~ 10164663 (+) True zgc:154075
XM_026920105.2 mRNA downstream 165509 10181492 ~ 10189088 (+) True LOC113530271
TU297603 other upstream 1377824 8621005 ~ 8625862 (+) False LOC113530359
TU297540 other upstream 1645586 8352789 ~ 8358100 (+) False spen
XR_004579705.1 other upstream 1666187 8312773 ~ 8337499 (+) False atp13a2
XR_004579706.1 other upstream 1666187 8313817 ~ 8337499 (+) False atp13a2
TU297455 other upstream 1762919 8240018 ~ 8240767 (+) False si:ch211-197l9.2
XR_004579736.1 other downstream 276623 10292606 ~ 10339205 (+) False kcnab2b
TU299368 other downstream 832868 10848851 ~ 10851345 (+) False b4galt3
XR_004579720.1 other downstream 856046 10872029 ~ 10912533 (+) False atp2b3b
XR_003403205.1 other downstream 980626 10996609 ~ 10996743 (+) True LOC113530991
TU299671 other downstream 1215446 11231429 ~ 11237362 (+) True oard1