RNA id: XM_026920901.2


Basic Information

Item Value
RNA id XM_026920901.2
length 2055
RNA type mRNA
GC content 0.52
exon number 11
gene id slc1a7b
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24091122 ~ 24131107 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGCGGTGGCGTTGGATGCAGTGTTTGTGCGGGTGAAGGGTGTCTGCAAGCAGAACGGGCTGCTCATCCTCTCTGTGCTGGCCGTCGTCATCGGCTGCCTGCTCGGATTCTTCCTGCGCACCAAGCAGCTCTCTGAGCAGgaAGTGAAGTATTTCCAGTTTCCAGGAGAGCTCCTAATGAGGATGCTGAAGATGCTGATTCTGCCTCTCGTTGTTTCCAGtctcatgTCAGGTTTGGCGGCTCTGGAGCCGAAGTGCTCGAGCAGGTTAGGCCTCATCACCATCTCCTACTACCTCTGGACCACGTTTCTGGCGGTGGTGGTCGGCATCGTCATGGTCCTGATCATCCACCCTGGGGGCGTGGCCCAGAAAGAGGACTCAGAGGATAGCAGCAAACCCATCATGAGCTCAGCTGATGCTCTGCTCGACCTCAtacgGAACATGTTTCCTGCCAATTTGGTTCAAGCTACATTTCAGCAGTATCGCACTAACAGCGTACCCATCATGAAGACATTGAGGACAACAGAGAGCTCAAGTGTGACACGTCGCACACTCATCTACAATCTCCAAGACGACAACGGTAACAGTGAAAATGGCAGCGATGTCCGTAACTTCCAGCTGGACCTGACGCCTCCGCCTGATGTGGTGATGCGCACCCAGCCTGGAACGAGCGAGGGCATGAACGTGCTGGGCATTGTCATCTTCTCTGCTACTATGgGCATTATGTTGGGCAGGATGGGTCCTAACGGCAGTGCGCTCGTTAACTTCTGCCAAAGTCTTAACGAGGCCGTGCTCAAAATCGTAGCCATTGTTATCTGGTACTTTCCGTTTGGGATCGTGTTCCTGGTGGCTGGAAAGATCCTGGAGATGAGCGATCCGTCAGATATGGGTAAGAAACTGGGATTTTATGCCATTACAGTGGTGATGGGTCTGATCCTGCACGGGCTCTTCATCCTGCCCAGCATGTACTTCTTCATCACCAAGAAAAGCCCCATCGTTTACATCCGGGGAATCCTACAGGCTCTGCTCATCTCTCTGGCCACCTCATCcagctctgcCACGCTGCCCATCACTTTTAAGTGCCTGCTGGAGAACAACCACATCGACCGGCGCATCATTCGCTTCGTGCTGCCTGTCGGTGCCACCATAAACATGGACGGCACGGCGCTGTACGAGGCTGTGGCGGCCATCTTTATCGCTCAAGTCAACAACTACGAGCTGGACTTTGGCCAGATCATCACCATCAGCATCACAGCTACAGCAGCGAGTATCGGTGCGGCAGGCATCCCGCAGGCTGGTCTGGTTACCATGGTAATAGTGCTGACCTCCGTCGGCCTGCCGACCGATgacatcacactcatcatcGCTGTGGACTGGGCTTTGGACCGGTTTCGCACGATGGTGAACGTAATGGGAGACGCGCTCGCTACAGGAATCATGGCGCACATCTGCAGGAAGGACTTCATGCAAGAGGGAGACGGAGTGAGTCACGTTCCTCTAATCTGCGAGACGAAACCCGTCCACATCCAGCAGCTGATGAACTGCCAGCAGAATAACGGCAGTTTCCAGCCGCTTCCAGCAGGGGGCAAACCTGAGCTCATTTCCCCGGACGTCGCTCGCCTCATGCAGTTAGAGGAAGGAGTGCGACCCCCGCCTCCCGAGCGTAAAATACCCCCAGTGCCCCCACGCCACCTTAAACACAAGGACAAGGAGCACTGCTCCATCGACATGAACGGCCTCGAGACCAACGTATAGCGGCCATGTTGGACGATCTGGACATAAACGATATACGCGGATTAATGGATTAACTTCTTGCTGTAATTTGATTCGGGTTTACGTTTTGTTTTGCGTATTAGTTTGAGGGGATGGAACAGCATTCGTagaattgttattatttttttgtttttgtgaattgTTGTGAGTTTTACACAAAATCAGGTCCATGCTAATCACTTAAATGCTAATTTAGCCTGACATTGCTTTTCAAACTAGCTGGATAGGAATGAATCATGCTAACCAACCAGTGCTGcgagaaaaaaacagatcagcTCAAGA

Function

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0016020 membrane cellular_component
GO:0017153 sodium molecular_function

KEGG:

id description
K05618 SLC1A7, EAAT5; solute carrier family 1 (glutamate transporter), member 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308299 lncRNA upstream 60787 24023376 ~ 24030335 (+) True G260410
XR_004579725.1 lncRNA upstream 78118 24010675 ~ 24013004 (+) True LOC117599260
XR_004579726.1 lncRNA upstream 87741 24002549 ~ 24003381 (+) True LOC117599261
TU308096 lncRNA upstream 172731 23917881 ~ 23918391 (+) True G260232
TU308080 lncRNA upstream 221566 23867651 ~ 23869556 (+) True G260217
TU308322 lncRNA downstream 611 24131718 ~ 24131958 (+) True G260430
TU308323 lncRNA downstream 4687 24135794 ~ 24140619 (+) True G260431
TU308326 lncRNA downstream 14883 24145990 ~ 24146339 (+) True G260434
TU308296 lncRNA downstream 27759 24158866 ~ 24161640 (+) False G260409
TU308297 lncRNA downstream 27759 24158866 ~ 24161640 (+) True G260409
XM_026920938.2 mRNA upstream 35598 24048016 ~ 24055524 (+) True gpx7
XM_034311922.1 mRNA upstream 123236 23951660 ~ 23967886 (+) False mcoln3b
XM_026921140.2 mRNA upstream 123236 23951661 ~ 23967886 (+) True mcoln3b
XM_026921141.2 mRNA upstream 124438 23951661 ~ 23966684 (+) False mcoln3b
XM_026920473.2 mRNA upstream 169146 23888706 ~ 23921976 (+) True syde2
XM_034311701.1 mRNA downstream 35613 24166720 ~ 24184554 (+) False LOC113530931
XM_034311699.1 mRNA downstream 35614 24166721 ~ 24188371 (+) False LOC113530931
XM_034311698.1 mRNA downstream 35615 24166722 ~ 24188371 (+) True LOC113530931
XM_034311700.1 mRNA downstream 39957 24171064 ~ 24188371 (+) False LOC113530931
XM_026921040.2 mRNA downstream 168489 24299596 ~ 24306661 (+) True cltrn
TU308306 other upstream 58398 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 701808 23387538 ~ 23389314 (+) True G259993
TU307769 other upstream 707469 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other upstream 707469 23371747 ~ 23383653 (+) False LOC117599309
XR_004579671.1 other upstream 1411572 22671625 ~ 22679550 (+) False LOC113530514
TU308384 other downstream 137470 24268577 ~ 24269267 (+) True G260483
XR_004579660.1 other downstream 493830 24624937 ~ 24634545 (+) False ddx58

Expression Profile