RNA id: XM_026920902.2


Basic Information

Item Value
RNA id XM_026920902.2
length 3601
RNA type mRNA
GC content 0.42
exon number 15
gene id osbpl2b
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14981346 ~ 15002677 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGAGCCCGCCTACTTCAGGCACTTCCGTCTCTGTGTCAGCTGCGTTAGCGTCCCAGCACTCAGAGGTTCAGTGGGAAGCAGGCGCTGGACTACATCACATTCAAATCAGCACAGGATTATTGGCGTGGGGTTCGTGCAGTCAGGAACATCAGCCAAGCATCCGCGAGGGACCATGTTCTAGTGGCTCGCGCTGGCTGTCTGACAATACAATGAACAATGAGGACGAGTTCTATGATGCCGTCACAGGCTTGGATTCGGACGAGTCATGTGAGGGCACTTCAGAAGCCAGTTTTAAAGATGCAGTAGTGGATGCTGGTGCTGAGAAGAACAATGGCACTGTACAAGAAAATGGAATCAAGAAACGCAGGTCAACACTTCCTGCTCCCATGTTCTCCAGAAATAACTTCAGCGTATGGAGCATCTTGAAGAAATGTATAGGATTGGAGCTGTCTAAGATCACCATGCCCATTGTGTTCAATGAGCCCCTAAGCTTCCTGCAGAGAATCAGCGAGTACATGGAGCACACGTACCTCATCTACAAAGCCTGTGCAGAGTCTGACTCCACTGAGAGAATGCAGGCTGTAGCTGCCTTTGCTGTGTCCGCTGTGGCCTCTCAGTGGGACAGAACTGGAAAGCCGTTTAACCCTCTGTTAGGGGAAACCTATGAACTCACACgaGAGGATCAGGGCTTCAGGTTGATCTCAGAACAGGTGAGTCATCACCCACCAATCAGTGCATTCCATGCTGAGAGTTTAGGAGAGGACTTCCTGTTCCATGGCTCTATATACCCAAAGCTCAAGTTCTGGGGCAAGAGTGTGGAAGCAGAACCAAAAGGAACCATCACGTTAGAGCTCCTCAAGCACAAAGAGGCATACACATGGTCAAACCCTTTCTGCTGTGTACACAATGTCATTGTGGGCAAACTGTGGATTGAGCAATACGGCACTGTAGAAATACTGAATCACAGTACTGGAGATAAGTGTGTGCTGAACTTCAAACCCTGTGGGATGTTTGGCAAAGAGCTGCACAGAGTGGAGGGATACATCCAGGATAAAAGTAAGAAGAAGCTATGTGTGATCTATGGAAAATGGACCGAATGCATATGGAGCGTAGACCCACAGGTGTACGATTCTCATCGCAAGAACGATAAAAAAGGAGCAGCAGACACCAAGAAACAGAAACCGgaggagGCAGATGTTGCAGAAAATGATGATGCAGATGACATGCCGGAGGTACAGGAGACTGTAGCTGTGATCCCTGGTAGCACTCTACTCTGGAGAGTGTGTCCTAGACCACCTCACTCAGCagagATGTATAACTTTACTAACTTTGCTATCACACTGAATGAATTGGAATCTGGCATGGAGGGTGTTTTGCCCCAGACAGACTGCCGCCTACGACCGGACATACGAGCCATGGAGAATGGAGACATGGacgaAGCCAGCAGGGAGAAGGAGAGGCTGGAGGAGAAGCAGAGAGCAGCTCGTAAAGACAGGGCAAAGGATAATGAAGAATGGTCTACTAGGTGGTTTGAGCTGGGAACAAACCCGTACACAGGATCACAGGACTGGCTCTACACTGGAGGTTACTTTGATAGGAAATACACAGACTGTCCTGATATCTACTAATGAGGGACCAGCACTCAAATCCTTTCCTTTCTTACCGCCACAGCATCCAGCATCACATATCAcacatgtgtttatatatatatatatatatagttcatCTGGAACTGATGCTGGTTTTTCATCACTCAACCAAGtatatacatcacacactgctTACCGTATTTAGCAAAACATCTTTAACTTGGTCTGTATTGAAATCAGGGACTTGAGCGCTCATTCTGTAAGTTCTGTATTTCTGATGGGTGAAAGGGGAGGACGTGATCACAGCATTTCGGACTTTCTTATTTTCCCAGCTAGTTGGGGTTTTTGCTGTGAGAGCACTGATGTTTTTCATCTAGATCATAAGGAAAGtgcagaagaaaagaagagggaCTGATTATCAGAGAATTGCCTTATTCTCTGCCTTAGAACTCTTAATACTCCCATTACATCTCTGTGCCCtgtttaattttagtttattgCTCCATGACCGAATCTGCAGGTCAATCTATATAATCAACGCATACTGTGACGCGGAACCAATTTCCTCATGGTCGTAGCCCATACTCAAATGTGTGTGAACCCACAGAGGTGACGAACATTATTGACTTTTGAGAGCACTGATATGCTACAAACTTACCTGACCAACTGGCCACTGTTAAAATAGTCAAAAGTGAATCAAatcataatgatgatgatgatgatgataataatattagtaataataataatgatctgctctgtgtgtgtgtgcgcgtgtgtgcaaTATACTATATTTCAGTTTATGTGAGCATTCTTCACTTGGAGGTACAATATAATGTCCCTGATGGGTTTTTAGTTCTCATGGGGGGATTTTTTTCCGAGTCAGAAACTATAGCAGTTATTCACATAAaagttcacattaaaaaaaaatgcaaccgtgaaatgtatttttaatgactgCTGAGAGATTTGCCTCTGAGTATCATGCGATGTGTGAGCATTTGGGTTGTGATGCTCTGACAAGATtggaattgtaaaaaaaaaaatataaatatatatatatatcatgcaTTCAGTGTCATGCCTAATAGGattaatgttgtgttttgttagctGTCGCAAGTTCCTTGTTATTTGGTCTGACTCTTTTTCACCACTGTTCTGTAATATGGCATATTTCTTGCAGTTGCGTGTATCCAGTTTGTCCTGTCGTATACATCAATTTAGAGCACATCTGATTTAAATTTCATGCATCATGCTGTATTCATTATCACTATTCCTAAACTTGGGTAAACTCGCACACCTCTTGTGAGAGCAGTCACAATCTATGCAACTCATCAAATGTTTGAAATCCCTGTGTATTTACTTGTAACTGTATTAGGTCTGAAGCTAGATAAATAGTCCATAGTTAAGTCTGACTGGGGAAAAATGTCTATAGGCAGTTTATGGGATTGAAAAGTTGCAGCAAAGTATGCTCTCAGCTAATATTATTTCCTTCTCAGTGCCCACAGTTGCTGATGATCACCCTTCCTataatcatattttcttttcccttttcgCTTGATCACTGAAACTCTAGTTATGATATGTGCAGGAGATAATCGTCGCATTGACATTTTCGAGGCACAGTGATGCTAgaatttcatgtgttttattttaaataccaaacttttttcccttcagtgCCTGAGTTTGTATCACTGATActtgacatttttattgtttctcaATCAGTGTCATGGGTGTTTTAAGATTTCTTTAAAAgtatgcgttttttttttttttttttgtctgctgcGTGCTTAACCAAATTTCACTTCCTTTCCCTCAGTGATTAACagtttaaaatgcttaaatgtCAGTGAGAATGTTGGCAGATTTTCACAAGCTGTATGATGTACACATGTACAGTGCATTACACTACTTTGTTGTCTCCATTAAATTAGTTGCTCCATTTAAATGTACATTCGATTATATGAAAACTAGCAATATAAAACTAATACAGATTTTA

Function

GO:

id name namespace
GO:0006869 lipid transport biological_process

KEGG:

id description
K20174 OSBPL1_2, ORP1_2; oxysterol-binding protein-related protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302215 lncRNA downstream 102840 14875644 ~ 14878506 (-) True G255306
TU301946 lncRNA downstream 277076 14700224 ~ 14704270 (-) False G255071
TU301947 lncRNA downstream 277076 14700224 ~ 14704270 (-) True G255071
TU301888 lncRNA downstream 448758 14530825 ~ 14532588 (-) True G255020
TU301364 lncRNA downstream 1280941 13700009 ~ 13700405 (-) True G254567
TU302322 lncRNA upstream 177709 15180386 ~ 15180640 (-) True G255403
TU302303 lncRNA upstream 179480 15182157 ~ 15185972 (-) True G255385
TU302304 lncRNA upstream 179480 15182157 ~ 15227960 (-) False G255385
TU302326 lncRNA upstream 255808 15258485 ~ 15260105 (-) False LOC113530775
TU302361 lncRNA upstream 329449 15332126 ~ 15332451 (-) True G255435
XM_026920171.2 mRNA downstream 2058 14973016 ~ 14979288 (-) False adrm1
XM_026920169.2 mRNA downstream 2058 14973016 ~ 14979288 (-) True adrm1
XM_026920159.2 mRNA downstream 134331 14840288 ~ 14847015 (-) True slc16a7
XM_026920809.2 mRNA downstream 232751 14741169 ~ 14748595 (-) False zgc:171775
XM_026920808.2 mRNA downstream 232896 14741169 ~ 14748450 (-) True zgc:171775
XM_026920118.2 mRNA upstream 91120 15093797 ~ 15116626 (-) False acss2
XM_026920116.2 mRNA upstream 91120 15093797 ~ 15116626 (-) False acss2
XM_026920115.2 mRNA upstream 91120 15093797 ~ 15116626 (-) True acss2
XM_026920555.2 mRNA upstream 122670 15125347 ~ 15140979 (-) True gss
XM_026920086.2 mRNA upstream 184721 15187398 ~ 15257751 (-) False si:rp71-79p20.2
TU301948 other downstream 277076 14699272 ~ 14704270 (-) False G255071
XR_004579685.1 other downstream 830765 14129216 ~ 14150581 (-) False LOC113530423
XR_003403204.1 other upstream 485080 15487757 ~ 15487859 (-) True LOC113530990
TU302676 other upstream 712358 15715035 ~ 15820154 (-) False znf512b
XR_003403156.2 other upstream 1645146 16647823 ~ 16695030 (-) False fam50a
XR_004579669.1 other upstream 1810707 16813384 ~ 16831259 (-) False si:ch211-210c8.6
XR_004579680.1 other upstream 2673888 17676565 ~ 17695598 (-) True LOC117599224

Expression Profile