RNA id: XM_026920905.2


Basic Information

Item Value
RNA id XM_026920905.2
length 2581
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC113530680
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24460527 ~ 24468085 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAAATTACAAAGACAGAGTGCCTTTCATTTTCTGCCAGAATGCAAAATCTAATTTTACCTACATGGACTGCCAAATGAGACtacattacccagaatgcactgctgtCATAGAGGATCATACCATcttcaatatttttctttatatttgtcaTAACAACCTGCGTCATTGAAGCAAATGTGCAAAAGTGCTGCAAGATTTAGGATGTAATTTCCCAGAATTCCTGCTGCTACCTAATGAAGACTCTGATTGGTTCCAGAGaaaCAGTCTTACTTCCCATTCTGATATACAGCTGAACTCGACACAtcagtggaacacacacacacacacacacacacacacacacacacacagagcgcacGATGGCTGCCCTGGACCTGCACTGTGGTGTGGatcctggagtgtgtgtgtggagcggAGAGGGCGTGGACTTGCTCGACTCCTTCGACTCAGAAATGCAGCAGTGGGAGGAGCAACTGCAGGAAGTGCAGAGGAAGATAGAAGAGttaTATAAGGTGGTGGAAGCACGCAGGGGAGCCAGTGAGATCAACCCAAACTCCAACGCTCAGCTGGACATCACCTTACTTCCTGTCACCAACGCCAGTGGTTACCCTAACAACGGTTACCATGGCGGAAATGTAAACAACGCCCCAGTGCAACACCAGACTTTTAAACACCCGAGTAATTACACCAAAGACACGTGCAGTTATGGTGTTAATTATCAGAACAATGGCTTTGCGGGTCCTCAGAGTTACACTGTTAAAGGTCAGGATGTGATGTTAGATATTCTGGACGGATACCTCGGGATGGAAAGTGGGAGTTTGAGCCAAAGCCGAGAGAAACCACGTGGAGCTCCACATACGagCTCCATCCAGAATCAGAGTGTTTACACTCATCAGAACGGAAGTAATCAGTGGCCAGTGACTGACAGGATTGGCTGTGTGTCGCTGGGTGAATTTGAGGAAGCGCAGAACAGGAAGAATAAAGGCTCAGCTTGGGACGAACCCCGAGTCCGACATGTCAGCTGGAAAGACCAGGTCACCTCCCCTGAGAAATCAGTCAATAAACCGCCAATCAAGCAGAGAGACAGCCCCCATGTCTCCGCTCGCCCTGCACACTTTTCCGACTCGCCGAAGTGCCCTCTATTGGACCGGAGGTGCGGCAGCCCATCTGTCCTGCGGAAATTCGGTGCCATGTTGCAGGAGAATGAAGGGAAAACACTGATTGAGGATGGAATTGTGACCACGCTGGTGCCCAAAGTAGTGCCCAGGTCCCCGAAGCTCAGTGGAAGCCGGGGGTCCAAGCACGTACCCGTCAAGGACACTGAGGTGCCTGTAACACTTCAGAACTGGGAACACAGAGGTGCAAAAGCGGGTGTCAAGACCTCTCATTGGGGGATGGACAATCTACAGACTGACTTCAGGATGACAGAGAGGATTCTGGGTAATTGCTCTACACCATCACCAAGGAACACGCCATCACCACACCAGGCGAGCTGTGACTCATCCCCCACTACACCCAGAAGGAGTTTCTCTCGTCCGGCTCGTCCAGCCAATCAGCGGCCTCCATCCCGGTGGGCAAGCCACGCCCCAACAGCTACAATAACCACGCACGTTGTTCCTAGATCCCGCTCACTCAGTCCCGCCTGTAAATCCAAGCAGCGCTTCAATAACTACAGTTTGTACACAGAAACCGTGATCATGTGAGCAGGAGGGATGGACACAGTAAAATTTTCACCTTTGACCTTTGTCCTTTTGGAATGTTTCcatctttcatattttttctatCTTTTCACACTTCACTCTATCTCACTTCTTCGTGTGTTTcgctgtatatatacacacgccTTGTATTACAAACTTGaatttaaaacaatgaaaatgtaaagaGCTGTGATCTTCCTGTAAACCCTAAAATAATTTACTGTAACAGTGctgatgtaaatataaaatgtttggaGTGTAATATAGACAAGTGGCCTGATGCTCTTCTGTGCCTATAAACTTCTCTTCACTTGGACTTTACTCATTTCTCCATTCTTTTCTATCATGTCATATTTGAAGTTGGGAttgttttttggatttttgcttttccttctttgcttttactttttttctctcttcttgtgTTCTTAAAAGTGCCACTCGGTTGGTGTTTGAGGGACTGTAATGTaactatattatattttcagtattatAAGTTTCTGATGTGATATAATCACAATCTGCACACAACTTCCCTCCCAAGACGAACAACATTAAATGCGCTATGAGAATTCAATTATTTAGTGAAGAAACATCTggaatattgtttaaaatggaCTTGCCACTTGTTTAGAGTAGAAACACTGTGtttcttttctgattttcacCTCTTTATAAAGGGCTTTACCTCATTATGGTGTGGTGAACGTATAGCTTTTCATGTCCTCTTGAAGTATCTTAATTCAAAACACTGCAGTCTTTCAAACCAAAACTCGAATTTTCTTTCCAGACTGTGCTGTGAGCCTGAAAATGTTACTTCacacttgtatttttttttgtttaatccatttttaaaggtattaaagcttctgatgatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308927 lncRNA downstream 7028 24448558 ~ 24453499 (-) True G260833
TU308924 lncRNA downstream 7028 24450136 ~ 24453499 (-) False G260833
TU308898 lncRNA downstream 24658 24372056 ~ 24435869 (-) False G260823
TU308888 lncRNA downstream 25429 24350255 ~ 24435098 (-) True G260823
TU308907 lncRNA downstream 51489 24387506 ~ 24409038 (-) False G260823
TU308936 lncRNA upstream 33044 24501129 ~ 24503863 (-) False tent5ab
XR_004579670.1 lncRNA upstream 131026 24599111 ~ 24600250 (-) True LOC117599219
TU308974 lncRNA upstream 147949 24616034 ~ 24618044 (-) True G260858
TU309007 lncRNA upstream 213740 24681825 ~ 24701043 (-) True G260873
TU309021 lncRNA upstream 225250 24693335 ~ 24694246 (-) True G260885
XM_034311956.1 mRNA downstream 13200 24387812 ~ 24447327 (-) True LOC117599267
XM_034311960.1 mRNA downstream 31522 24423025 ~ 24429005 (-) True LOC113530518
XM_034311961.1 mRNA downstream 57811 24396129 ~ 24402716 (-) True LOC117599268
XM_034311957.1 mRNA downstream 74272 24374273 ~ 24386255 (-) True LOC113530517
XM_034311958.1 mRNA downstream 89847 24351895 ~ 24370680 (-) True LOC113530519
XM_026920907.2 mRNA upstream 11 24468096 ~ 24473922 (-) True LOC113530682
XM_026920906.2 mRNA upstream 9283 24477368 ~ 24486328 (-) True elovl4b
XM_034312175.1 mRNA upstream 33648 24501733 ~ 24508468 (-) True tent5ab
XM_026921293.2 mRNA upstream 33648 24501733 ~ 24508467 (-) False tent5ab
XM_026920654.2 mRNA upstream 60205 24528290 ~ 24536074 (-) True tcp1
TU308180 other downstream 696364 23763674 ~ 23764163 (-) True G260310
XR_004579695.1 other downstream 1220181 23198582 ~ 23240346 (-) False LOC113530288
TU306971 other downstream 2011100 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 2505922 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 3105830 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579755.1 other upstream 33648 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 37543 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 319605 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
TU309105 other upstream 412873 24880958 ~ 24883145 (-) True G260947
TU309088 other upstream 516374 24984459 ~ 24990531 (-) False si:ch211-149b19.4

Expression Profile