RNA id: XM_026920906.2


Basic Information

Item Value
RNA id XM_026920906.2
length 3766
RNA type mRNA
GC content 0.44
exon number 7
gene id elovl4b
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24477368 ~ 24486328 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTATGCTCTGCTCATGTCATGGTCGTGTAACTCGGTGCTCGTGTAGACATTTACACAGCTCTGTTTTCCCGACTCAGTAAAAGAGCAGAAACTGAAACACTAACATCGTCTCAtgctaagaaaaaaatcagcgtATATCCATTTTCCTCTCATGCTAACTGACTGTGTGAGCGAGTGTTTGGCAGAATCGAGGTCTCTCAGCCAATAAGACACGAGTATTTCCACGTATTTTCCGGTAAACGCTGTCTGATTGCTTTTGTCTCCGTTCACTGAAGATAAAATACAACAATGCTGTCGTCTTTTACTGACGTTCAGTTACGTAGCGACAAACCGCTCCAAGTGGAGAAATATTCAGGGCTGAAGAAAAAATCTTCAGTCCTACATCCCCGAATGTCCAGGCCGGGTTACGGCCCTGCGCCGGTTCATGAGGACGCAGAACCTAATATTCATGTCTCATTAGTGTTTATTACTGGAACATCAGCCACTTTAGGGAAGAAAAATCTGATCTTTGAGCAACAGAGAtgcaaaaaaagtcaaaattacAACATGGCCGCAGCAGAGTCATGAGACAGCACTAGGGAGCAAGTTCAGCAGCTCTCCTTCAGTTTCAGACACACCCTGAGCTCTCTGCTGCCCGTGACCCCTGTGCAGGGCAGTGGGGTGACAGACTCCGCCCCCGCGCTCGCGCTCGCGCTGCTGAGTTTAACGGAGCGGTTCAGGCGCAGGAGCGAGCGGAGGCGCGCGCAGGGCATGTGACCGGGTGTCAGGGCTGAAActaaaccaaaaacacaaaattacaaCCTGTGTGAATGTTTCTGGTTTAGCTTCCGGTTTGTGCGCTTTGATGTTGCCGCGCGCTTTGGGTGTCGGAGATATTTAAagcgcgcgagagagagagagagagagagagagagagagcgcgagcgGTTCCGCTGCACCGGATGCGGGTGTAAAGTTACTGACCTGCAGCCAAGAGGATAATAAAGTAAGAGTGTTGCCATGGATACGGTGCTTCACCTCATCAATGACACAGCAGAGTTTTACAAATGGAGCCTTACCATAGCAGACAAGCGGGTGGAGCAATGGCCGATGATGTCATCGCCCCTCCCCACACTGGGCTTTAGCATGCTGTATTTGCTCTTCCTGTGGGCGGGGCCTCGTTACATGCAGCACCGAGACGCTTTCAAACTGCGCAAAACTCTCATCATCTACAACTTCAGCATGGTGCTGCTCAACTTCTACATCTGCAAAGAGctgttgttGGGTTCCAGGGCAGCGGGATACAGCTACCTCTGCCAGCCTGTCAACTATTCCAATGACGTCAACGAAGTTAggatagcGTCGGCTCTGTGGTGGTACTACATCTCTAAAGGTGTGGAGTTTTTAGACACGGTGTTCTTCATCATGAGGAAGAAGTTTAACCAGATCAGCTTCCTGCACGTCTACCACCACTGCACCATGTTCATCCTCTGGTGGATTGGTGTCAAATGGGTCCCTGGAGGCCagtCATTTTTCGGTGCGACTATAAACTCAGGGATCCACGTGCTGATGTACAGCTACTACGGTCTCGCCGCCGTCGGACCGCACATGCACAAATACCTTTGGTGGAAGAAATACCTCACTATCATTCAGATgatcCAGTTCCACGTCACTATCGGTCACGCGGCTCACTCGCTGTACTCCAGCTGCCCGTTCCCAGCGTGGATGCAGTGGGCGCTCATCGCCTACgccatcaccttcatcatcctcTTTGCCAACTTCTACTACCAGACCTACCGCCTCCGGCCGCGTTCTAAATCACCCAAGAGCGCCTCCAACGGTGTCACCGTCTCCGCCATGACCAACGGCTCAGCGATGAGTGTGGAGCACGCAGAGGAGAATGGCAAGAAACACAAGAAGGAACGAACAAAGAGGGAGtgaaggaaggagagaggagTGCTGGGAACTTTGCATCGGTGGGACTGTGGGGTTTTTAAAGGGAAGTAGTGTGTGTGGGCTGTTTGTTGATGGGCTAGATGGTGTCTACAAAACCGCTAACTATGCTAAGTGTGTAACTGTtagggggaaaaagagaaatgattcATGCAGATTGACGGCTGCCATTTTACTGGATacgattttatttatttattatttatttattttcaggcgTGCGCTGATCATctgttataatatttattacaatattcaCTCTGCATGGATCATCGTAATTTTCCGCAGACGATCCATAAATCTACTGCTAATCTGTCATGTTTAATTTACTATTGTAAACAGTGGCAGAGTTTTCTGAAATATAATTGCGATATGGAAACGATATATCGGCACGtgcatgtttattaaattaaatctcaGGAAACACATCGAGAtcagacacaaaaataaaccaaaggAAATTATATCAGGTTCTGTGCTAATGTTCAGACACAACCTTAGGCATAatgacatatttaaataatttagagTAATTAGAGACACTGGTTTCCTCTGACTTttattccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgaggctGCTTTAACACTAGCTGTTTTGTTCACTGTTGAGGAGAAGGAATGTGTAAGAGTACAAGTTTCAGTAAAGTACAGATCTTCCAAATCACTAATTAAGTACCTTAAGAAAGTACAGCGATCACCGAGCGCTGTTTTTGTTCACATCATGCACCACAGTGAGAATCAGAAACTtcacatattaaataatttgtgtaaataCGACCTCTGAGGGCTGAGCGTGATCGTACTGAAGTTCACTCCAAACACACTCTTGTAGCGCTGTATAGATTTAGGGAGTGTTCAGCTGGAGCACTTTCTCTGAGCTGTTATCCGGTTAGTGTACATTCTGCTTGCTGACCTTTTATAAGatgatgtttattaatgtgtaattagCAGCAGaagtaattttattataaataaagtaagCATTTAGAGCTGTAGTGGTTGAGAACTCTTTACAGTTTATTGACCAGTGTAGTGTGTGGACTGCTGGTCTTCTTCCAGCTCGTTAGATTTAAAATCAAACAATGACGAGCACTGTTGCTTTTCGTATCTTATTAATTATGTGCAGAATATCACCTTTAATCTGAGATAATAAAGTGCACAGTTTACTTTTTTACACCTAATGTAGTTGATCAGTAGGATCACTGGAGCTATAAGGCTAATATTTCTAACAAGTCATAGAATTGTATAGCTCTAGATTTCACTTTTGGCGAAACTATTACTACGTAAGCACGGGTTTATTAATAATTTCCCTAAAATATTTGTactctgtagaaaaaaaaaattaccttttGGATGTTTATTGGTTAAACTGAGGACAATTCAAGTGACTAAAGATCAACATCGTCATCATTAAACCTCCGTTAGTGTTTACGCTTTACTGAATTTTAAGAGTTTATAGCATAGAAAGTTTTTTCGTTCATGTCCTTTTACGAATAATTTCCCCCAACAACGGATAAAACAGTGTTACATAACATAAAACCTGTTAACCAAATAAACTGTACCTATGGCTTTATAAGTATTTCCACAGATTATTTTTGcaagctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtttCTGTGGATTTATATAGGAAATGTAgctgaaagctttttttttctttttttaaccattgtTTTGATGGAACTGCTGAAAATAGCAAATGTctgctgatggaaaaaaaaaagaataaacaggATGCCAGTGA

Function

GO:

id name namespace
GO:0042761 very long-chain fatty acid biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K10249 ELOVL4; elongation of very long chain fatty acids protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308927 lncRNA downstream 23869 24448558 ~ 24453499 (-) True G260833
TU308924 lncRNA downstream 23869 24450136 ~ 24453499 (-) False G260833
TU308898 lncRNA downstream 41499 24372056 ~ 24435869 (-) False G260823
TU308936 lncRNA upstream 14801 24501129 ~ 24503863 (-) False tent5ab
XR_004579670.1 lncRNA upstream 112783 24599111 ~ 24600250 (-) True LOC117599219
TU308974 lncRNA upstream 129706 24616034 ~ 24618044 (-) True G260858
TU309007 lncRNA upstream 195497 24681825 ~ 24701043 (-) True G260873
TU309021 lncRNA upstream 207007 24693335 ~ 24694246 (-) True G260885
XM_026920907.2 mRNA downstream 3446 24468096 ~ 24473922 (-) True LOC113530682
XM_026920905.2 mRNA downstream 9283 24460527 ~ 24468085 (-) False LOC113530680
XM_026920904.2 mRNA downstream 9975 24460527 ~ 24467393 (-) True LOC113530680
XM_034311956.1 mRNA downstream 30041 24387812 ~ 24447327 (-) True LOC117599267
XM_034311960.1 mRNA downstream 48363 24423025 ~ 24429005 (-) True LOC113530518
XM_034312175.1 mRNA upstream 15405 24501733 ~ 24508468 (-) True tent5ab
XM_026921293.2 mRNA upstream 15405 24501733 ~ 24508467 (-) False tent5ab
XM_026920654.2 mRNA upstream 41962 24528290 ~ 24536074 (-) True tcp1
XM_034311834.1 mRNA upstream 51157 24537485 ~ 24584563 (-) False LOC113530539
XM_034311833.1 mRNA upstream 51157 24537485 ~ 24584563 (-) False LOC113530539
TU308180 other downstream 713205 23763674 ~ 23764163 (-) True G260310
XR_004579695.1 other downstream 1237022 23198582 ~ 23240346 (-) False LOC113530288
TU306971 other downstream 2027941 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 2522763 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 3122671 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579755.1 other upstream 15405 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 19300 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 301362 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
TU309105 other upstream 394630 24880958 ~ 24883145 (-) True G260947
TU309088 other upstream 498131 24984459 ~ 24990531 (-) False si:ch211-149b19.4

Expression Profile