RNA id: XM_026920910.2



Basic Information


Item Value
RNA id XM_026920910.2
length 2322
RNA type mRNA
GC content 0.52
exon number 16
gene id ctnnbl1
representative True

Chromosome Information


Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23244729 ~ 23279510 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CTGAAGGTGTCGCTGCTGAGCTAGGAGTGTTTTCTTCTCCTCAATACACCGAAGAAGAAATAAACTTTGCACGGCGTTGACTGTGCTGCTAATATTTTACGCATTAAATAAGCATTTCTGTGGGGTAAATTCGGTCTTTAAAAAACTATGGACGTTGGTGAGCTGCTGAATTATCAGCCTGAGCGGGGAGGCAAGAGGCCGAGGGAGGAGAGCGGCTCCGAGGAGTCTCGGGTGAAGAAGAGCAGGGAGCCTCCGAGACCCGCGGCGCCGATCCCGGAACCCGAGCCGGAAGATCCGGAGAACAGAGAGAGGATCCTGGAGAAGCTCATGGACCAGGATGAGGTGGACCCTGAGGGTGAGCCGGTGGACGAGAGCATGGTGAAGAAAATGATCCTGACCTTCGAGAAGAGGTCGTACAAAAACCAGGAGCTCAGGATTAAATTCCCAGACAATCCAGAGAAGTTCATGGAGTCTGAGCTGGACCTGAATGACATCATCCAGGAGATGCACGTGATCACCACCATCCCTGAGCTGTATCACCTGCTGGTGGAGCTGAACGCTGTGCAGTCTCTGCTCGGCCTGCTGAGCCACGAAAACACTGATATCGCCATCGCGGTGGTGGACCTGCTGCAGGAGCTCACAGACGTCGATACGCTCAACGAGAGCGAGGAAGGAGCCGAGGTCCTCATCGACGCCCTGctgGAGGGCCAGGTGGTGGCGCTGATGGTGCAGAACATGGAGCGGCTGGACGAGACGGTGAAAGAAGAAGCGGATGGAGTTCACAACACGCTAGCCGTGGTGGAGAACATGGCCGAGTTCAGACCGGGTCTGTGCACCGAAGCCGCTCAGCAGGGACTCATGCAGTGGCTCCTCAAGAGGATTAAGGCTAAGATGCCTTTTGACGCTAACAAGCTGTACTGCAGTGAGATCCTGGCCATCCTCCTCCAGAGCAACGACGgcaCCAGGGAGCTTTTGGGCGAGATGGACGGCATCGATGTGCTCCTGCAGCAGCTCTCAGTGTTCAAGAGGCACAACCCGTCCACGCCGGAGGAGCAGGAGATGATGGAGAACCTGTTTGACGCTCTCTGCTCCTGTCTCATGTTGCCAGCCAACCGCGACCGCTTCCTTAAGGGGGAGGGGCTTCAGCTGATGAACCTCATGCTCAgggagaaGAAGTTGTCTCGCACTAGCGCCCTCAAGGTCCTGGACCACAGCATGATCGGCCCCGAGGGCACTGATAACTGCCACAAGTTTGTTGACATCCTCGGACTTCGCACCATTTTCCCGCTGTTCATGAAGACACCGAAGAAGATGAGGAAGGCTGGAGTGTCAGACAAGGAGCATGAAGAGCATGTGTGCTCCATCCTGGGGTCCATGTTGAGGAACCTGAAGGGGCAGCAGAGGAGCCGCCTGCTCAGCAAGTTCACCGAGAACGACTGTGAGAAGGTGGACAGACTGATGGAGCTGCATTTTAAGTACCTGGAGGCCGTTCAGCTCGCAGACAGGCGGATTGATGGAGAGAAGCAcGACATGGTGCGGCGGGGCGAAATCCTGGATGACACTATGGAGGACGAGTTTTACCTGCGACGTTTAGACGCTGGTCTTTTCGTCCTGCAGCTGATCTGTTACATCATGGTGGAGATCAGCAGTGCAGGAATTCCACAGCTGCAGCAGAGAGTACATCAAATCCTGAACCTGAGGGGTGGATCGGTTAAGACGGTGCGGCACATCATGAGAGAATACGCAGAGAGTATCGGTGACGGCAAGAACGAGGAGTACAGACTGAGCGAGCAGAAACGGATCATGGAGCTTCTGGAGGATTTCTAACTTTCCAATCGGATCACGGATCACAGATCCGAACACCAATGACTGCTGTCtgatttctctgtaaataaTGTGTTTGATAAATTGATGTCATGACTAACGGCTCAAGCAACACGAGCATCACGTTAAATGTGAAGGTCAATACTGAACCGTGTTTCTGTTGCTTCTTTGCTATAAAGCACATTTTGTATACGAGTCATTTTTAAACTGGACTTGTGAGAACAAGACCAACCGAAAAGatgtaataaaatttttttttgctttgtcacgtgtgagtgagtgataaTTGCTAAGACTGGCCTTGCTGTGATGTGTGCTGTTTTTAGCATGACGATGTACAACATCTAAAACACTGCGTCCAGGCGAAACGCCATCTTTAAGGCACATTTCCAACACAGGAACACTTCTCATACCAAGCTCAGAAGTTTCAGATCCATGTTCATGGAATGTTCATGCTGAACACCAAatgataactaaataaaaacttcTCCCCATGTA

Function


GO: NA

KEGG:

id description
K12864 CTNNBL1; beta-catenin-like protein 1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU307655 lncRNA downstream 63137 23180382 ~ 23181592 (-) True G259897
TU307596 lncRNA downstream 222049 23022414 ~ 23022680 (-) True G259839
TU307595 lncRNA downstream 223159 23021361 ~ 23021570 (-) True G259838
TU307566 lncRNA downstream 226369 23017306 ~ 23018360 (-) True G259812
TU307557 lncRNA downstream 232367 23010849 ~ 23012362 (-) True G259809
TU307824 lncRNA upstream 29505 23309015 ~ 23309614 (-) False e2f1
TU307833 lncRNA upstream 36790 23316300 ~ 23317419 (-) False e2f1
TU307828 lncRNA upstream 53159 23332669 ~ 23335335 (-) False G260021
TU307829 lncRNA upstream 53159 23332669 ~ 23335335 (-) False G260021
TU307830 lncRNA upstream 53159 23332669 ~ 23335335 (-) True G260021
XM_034311678.1 mRNA downstream 4382 23192257 ~ 23240347 (-) False LOC113530288
XM_026920135.2 mRNA downstream 4383 23198582 ~ 23240346 (-) True LOC113530288
XM_026921349.2 mRNA downstream 58423 23181609 ~ 23186306 (-) True rprd1b
XM_026920930.2 mRNA downstream 117774 23019730 ~ 23126955 (-) False dlgap4a
XM_034311580.1 mRNA upstream 29389 23308899 ~ 23317464 (-) True e2f1
XM_034311749.1 mRNA upstream 51739 23331249 ~ 23359264 (-) True itchb
XM_034311687.1 mRNA upstream 114162 23393672 ~ 23395815 (-) True LOC113530415
XM_034311899.1 mRNA upstream 243903 23523413 ~ 23527413 (-) True LOC113530552
XM_026920812.2 mRNA upstream 267915 23547425 ~ 23556299 (-) False abce1
XR_004579695.1 other downstream 4383 23198582 ~ 23240346 (-) False LOC113530288
TU306971 other downstream 795302 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 1290124 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 1890032 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 2075031 21168986 ~ 21169698 (-) True G258580
TU308180 other upstream 484164 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 1222223 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 1226118 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 1508180 24787690 ~ 24794897 (-) False si:ch1073-157b13.1
TU309105 other upstream 1601448 24880958 ~ 24883145 (-) True G260947

Expression Profile