RNA id: XM_026920917.2



Basic Information


Item Value
RNA id XM_026920917.2
length 2544
RNA type mRNA
GC content 0.48
exon number 7
gene id ftr92
representative True

Chromosome Information


Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21829265 ~ 21835197 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


TAATGTCTTAATGAACATGATCTTTACCTCTTGTTTAACTTGTCTTGTTGTTTCCTGACCATCCACTGGGACCATTTGTTGCTCATCACAACGGGTTTTGCTGAATAAATTAAGCTTACTGAAGCTCCTCCTCCACATGCGAAGAGAGATCCTgagaaatgaaactgaaattgTGGTTCTCTGCTTCCGGGACAGATCTCTTTTACTCTTCCCTGCtgcatacattaaaaatgataacCACCAGCAAGCCACGCTCACGGAACCTTCCTGAGTGCTGTTTGTGTCTTACAAAGTCTAAGGATGTTGTTACTATTCCCTGTGGGCACTACTACTGCACTTCCTGCACTGACGGCTTGGTCAGTAAGTATGAACGCACAGGCTCGTACAGCTGCCCAcagtgttcacaaactttctccACCAAGCCTGATCAGGATGGACCAGTGGACACAGCTGTGGACAGTCTCAGAGAGACAGATCTCTACACTGAACCCTCAGCAGCCCCAGCTGCTGGTCCATCCTCTTCCAGCTTGACCAGGCCTGAGCAGGGCAGCCCTGTGGACAAACTGAGAAAGACAGCTTTCCACATGCACACCACAGCAGACACCACTTCCAGGCCTGAGGACGTGGCCTGCGACGCGTGCACTGACAGCACACACAAAGCTGTCAGGTCCTGCCTGATGTGTCTGGCCTCATACTGTGACACACACCTCCGGCTGCACAACGACCTCCATGTGAGGGCTGCACACACTCTGGTGGATGCTTCTGATCAGCTACAGGCCACTTCGTGCTCCATACACGGTAAAGTCCTGGAGGTTTATTGCCTTAAAGACAAACAACGTATCTGTTGCATGTGCATGCTGGAGGATCATAAAGGGCATGACATGGTGGCAGCAGGACAGGCAGAAAAGAAGGAGGAGTTAAGAAATTCCAAGCAGATGATCACAGAGCAAGAGAAGCAGCTCAAGGAGCTTCGCTTGGCTAAAAACTCTCTCAGGCACATCGCAATAGCTACGGAGGAGGAGAGCGAGCGGCTTTTCACCGAGCTGATCCGCTCTATACAGGGCAGCCAGTCTCTGATGAAGGTCCTGATCCGAGCTCAGGAGCGAGCAGAACTGGACCGAATCAAGGAGGTGATGAagcaggtggaggaggagtTAACTGAGCTGAAGAGGAGTGATGCTGAGATGGAGCAGCTCTCGAGCACTCAGAATGACATCCACTTCCTACAGTCAGTTCAGGCCCTGAGTCTCACTTCTGCAAATGTCTTAAAGATGACGGTCAATCCTCAGTTCTCTTTCGGCGAAGTGGTGAAATCCATCTCTGTGCTCAAGGAGCAGATAGAAGACATCTGGCAGCGTGAATTTGATCAAATAGCAGCAGCAGTGAAAAAAGACAAGATTGTAGTTCCTTCTGAACCGAAGACAAGAAAGGACTTCCTGCAATATCTGGTCCCGCTGTCTCTGGACCCCAACACAGCCCACCAGAGCCTGAAGATGTGTGAAGAGAAGAGCGTGGCGTGCAGCACCAAGTGCCAGCCCTACCCTGACCACACTGAACGCTTTGACTGGTGGGCTCAGGTTCTGTGCCGAGAGCCTCTGAATACACGCTGCTACTGGGAGGCCGAGTGGACGGGATTACATGGAGTGGACATTGCAGTCTCGTACAGAGACATCACCCGGAAGGGAGAAGATGATGAATGCAGCTTTGGGTACAACAAACAGAGCTGGAGTTTGGACTGTGCCATATTGAAATATGCTTTTGTGCATGACAATGTCGAAACGGACATCTCAGCACCTGTATCCCACAGGATAGGGGTGTATCTCGACTACAAGGCCGGAGTGCTGGCCTTCTATAGCGTCTCGGACTGTATGACGCTCCTCCACAGAGCAGAGACGAGGTTCACACAGCCTCTATATGCCGGGTTTGGGTTGTATCAGGGATCCACAGTGAAGATATGCCAGCCAGACACAGAGGCAAAACAAACAGATACCCAAAGAATCAAGAGCAGTACAACTGAGAATGGAAAAAACACACGAAGAAAAGAGCACAATGGGCTCCCCTTTGGGGCTGGTGTTTAACATTTCGACCTGTTGTCAGGGGATCACTAGGTTGAAACCTAACAATGCCACAGGCATCTATGCCCGAGAGTCCATGTAAAGGATAAATGGATTTGCTCTCCATAAGCAATGATGGCATTTTCTTTTGTGTCAATCAGAGCAATGCTAGCCAATCACAGGACTTACTTACTGTTAGGCTCACTTAATGTCTCCTCCAAGCATATTCAGCTATTCATTGGTGCAGTGGCTGGCTTTATCAGGCATGTATTAGCCTTCGTCTTCTAGAAGTGATAGCTGTCAATAGCTGTGAAAATccaaaaaatggggaaaaagaaagaataatggGATTTCTGGCACCTAAAAAAGGTTCCTGTTCAACTTTTACAGAAGCaaaactggaagaaaaaaaaaaaaaccactgaaaaTCCATGTAAAAGGGTTAAATATTCTTGTACATTCAGGGTTGGGAACTTttccatgtgctttt

Function


GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU306588 lncRNA downstream 22505 21805096 ~ 21806760 (-) True G258966
TU306582 lncRNA downstream 30021 21798836 ~ 21799244 (-) True G258961
TU306562 lncRNA downstream 76813 21751405 ~ 21752452 (-) True G258942
TU306559 lncRNA downstream 79264 21749791 ~ 21750001 (-) True G258940
XR_003403152.2 lncRNA downstream 230136 21588429 ~ 21599129 (-) True LOC113530427
TU306772 lncRNA upstream 181289 22016486 ~ 22021151 (-) False cpeb2
TU306775 lncRNA upstream 196081 22031278 ~ 22035963 (-) False cpeb2
TU306958 lncRNA upstream 506664 22341861 ~ 22371089 (-) True G259294
TU307005 lncRNA upstream 587395 22422592 ~ 22424242 (-) True G259337
XR_004579704.1 lncRNA upstream 632466 22467663 ~ 22469753 (-) True LOC117599239
XM_026920092.2 mRNA downstream 157913 21628132 ~ 21671352 (-) True LOC113530264
XM_026920093.2 mRNA downstream 157913 21631393 ~ 21671352 (-) False LOC113530264
XM_034312021.1 mRNA downstream 333210 21494416 ~ 21496055 (-) True LOC117599277
XM_034311891.1 mRNA downstream 354423 21472718 ~ 21474842 (-) True LOC117599258
XM_026920132.2 mRNA downstream 524637 21297056 ~ 21304628 (-) True ednrab
XM_034312131.1 mRNA upstream 23015 21858212 ~ 21883246 (-) True gpsm2l
XM_026920925.2 mRNA upstream 49468 21884665 ~ 21921592 (-) True ghrhrl
XM_034312129.1 mRNA upstream 90047 21925244 ~ 21954662 (-) False fyco1a
XM_034312130.1 mRNA upstream 90047 21925244 ~ 21954641 (-) False fyco1a
XM_034312127.1 mRNA upstream 90047 21925244 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 474568 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 659567 21168986 ~ 21169698 (-) True G258580
TU305957 other downstream 961307 20830828 ~ 20867958 (-) False LOC117599256
TU305550 other downstream 1557358 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 1709316 20110463 ~ 20119949 (-) False mlh3
XR_004579748.1 other upstream 93978 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 610833 22446030 ~ 22449427 (-) True G259306
XR_004579695.1 other upstream 1363385 23198582 ~ 23240346 (-) False LOC113530288
TU308180 other upstream 1928477 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 2666536 24501733 ~ 24508467 (-) False tent5ab

Expression Profile