RNA id: XM_026920926.2


Basic Information

Item Value
RNA id XM_026920926.2
length 4942
RNA type mRNA
GC content 0.56
exon number 13
gene id dlgap4a
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23019730 ~ 23126956 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGCGATATATCGCGACTGTTGTTGCTTTATTTTCCCCTGTGCTCCAGCactcctccctccatccctccctccatccttccatccctccctccctccctagATCACCTCAGCAGCAGTATAGAGGCGTCGTAGCGCGGCTCTTTCTCACCGGCGCGCGCGGGCGGAAGCAGGGGGTGACGCTTCCCCGGTAAACGGCGCGCGCGCCTCCAGTCGCAGTCAGTGAGTCACTCGGAAGCAGCGCCGGTGTTGGCTCGCCCGCTCGCGCTCGCGCTCAGGCACCGGCGGCGGACATGAGGGGAATGTAACGGCAGGATGTGAACATCAGCACCGAGTCGTGCCGCTGCAGACACAGGACACAGGACATGTAGAGGATCCCGCGCGCGTCGGTGAGTGGCGCGTGCGCGTCTGgcggaaataaataaataaaaaaaataaagccgGGGTGAAAATACGCGGTGCGTCGGCGCGGAGCTGAAGCGCAACTCACTCACAGGGATTAATATTAACCATAATAAGaatttaaacaacaacaacaacaacacacaacaacaaaccCGCAATTTCAATGATCAACAGCGCGCGGGTGCGTGAATTCAGGCGCGTTCGTGCGCTTTATTTGTCCGAGATGACCGGATGAGGGAAGGACACGCGCTGGGCTCGAGCAGCAGGTTCACCGGCGGACACGCGCAGGTGGCGCCCTCAAGGCCTGTAGACTCACTCGAGCAGGGATCATGTTTTAAAGCGGACCAACCATGAAAAGCTTAGGGGCCAGCCACGCTCGTCACTTGTCAGACTCCTGCATGCCTGTGGCAGGTCCCCAGGAGCCGATATGCCCCTTGACCCCAGACCCCCATGCAACATACCTCCTAAACCCCACCATCAGCCATTATGGCACTCTGGATCCCCACATGCACCACTTCCCTCCAGCAAGCCCCATTGCGCTGCAGTCCGACTGCCTGCTGCCGCTCAACAACCAGCTGACCACCAGCAACACCTTCCCTCGCTTCCAGTTCCCCTCCCAGGTCGATCAGACTGAGTACACTCAGCAGGGTTGCGTGTCTCAGACGGCTTCTCGCACAGGCACCCTCACCACCTCCGCATCTATGGGAATGGGCTTAGGTCTTGGACTCACGGTTCCACCGATGATCAGCAGCGGCACGGCAACGATCTCCTCAGCCGCAGCAGCCAAGATGAACCGCATCCCGACTGGCTTGCTGGACCAGCTAGAGCACCACGTCCCACTACAACGTGACGGCTTCAGCACGCTTCAATTCCATAGGCGGAGTCGTGGTGCCAAGCAGCGCAGTGAGAGCCCTGGTCGCATCCGCAACCTGGTGCACTCTGTCCAAAAACTTTTCTCCAAGACTCAGTCTGTGGAGGGCTCGGGTGGTAAGGGGACTGTGCAGGGAGCCGATGGCACCAAGGCCACACGCCGGTCCAAGAGTAAGGACCGTGCCAAGACAGAGGGTGCCAAGAGACGGGGACGGCCCAACCTCTCCGGGTTCTGGAGCTCAGATGATGCTCTGGAGGATGAAGCAACGACTCAAGAAGCAACTGGTCCAGTGGCCGTAGCTTACCGTAACCCACTGAGCATGATGACACTGGGCAGGGCAGTGTCAGACAGCCAGGCACCTCCCAGAACCCACGCACAGGGCTACAATACCATCGCTGCTCACCGTTCTCTCAAACCCTCCAAGAGCAGTGGAGAGCTGAAAACCCAGACAGTGTCCTCGACTATTGGACCAGCAGGAGATGGCACACTGGCAAAAAGAGGTTCATGGTCAACGCTAACTCTTAGCCAGGCTCGGCAGGTGCTGCAGAAAGGCACAGCCACAGTGAACCGGACACTGCTCAAGTCTAAGTCCTACCACCAGGAGCTGACCTCCAACTTCCTACAGGTTCCTGTTGGGGATTGGAGCGGGACACTAGGTAAGGGAACAGGAGCAGGAGGGGAGATCCCATGCAGGAGAATGCGCAGTGGCAGCTATGTCAAAGCCATGGGCGATCCCGAGGACAGCGACCAGTCTGACAGCCCTCCCTCACCAAAACCCTCGCCAAAAACAGCCGCTCGGCGCCAGAGCTACCTAAAGGCCACACAACAGTCACTCAGCGAACAACAACCGCCTCTGCCACCTCGCAAACACCGCTCATGCCCATTCATGTGGGAGCAGTACAGGGTGGCATGGGCTCCTCTACAGAACGCCTACTCCATGCAGCATCTGGCAAGCTGCTTGCCATCTCTGCGAGAACTCACCACCAACCGCAGCCTGGATAACCTGGACTGTCTGGTGGGGCAGAGTGATTCTCAGCACTGGGACAGAGAAGGGAACTTCGGTCACGGCTCGTCCACACTCGGACGGGGTTCTGGCATTAGCCAGaTGGATCAGAGCTGTCTGTGCTCAGCGGCTTACGGCCACATGGACTCGCAGGCAGTGGAGGCTCTGGATCTGACGGCACCGACCTGCTTCCGCTCGCGCAGCCACAGCTACCTGCGTGCCATCCAGGCCGGCTGCTCTCAGGATGACGACTCGGACTCGGACGAGCCTCCGCTGAACACCAGCAGCAACATGAGCACCCGTAATAAGACTCCGCCCCCGGTTCCTCCCCGCTCCGCCTCCAAGCCCTTCATCTCGGTGACGGTGCAGAGCAGCACGGAGTCGGCGCAGGACACCTACCTGGAGCAGCGCAGCGAGGCCAACAGCCAATCGGGACGCAGCAACTCCTCGGACAGCGCCACCAGCTCGAGGACGGGCAGCCTGGCCAAAGCTCCTCTCCCCCTGATACCCCACATCCCCATACCCGTCCCCCTGGTGCCCCCCATCCCCGTCCCGGTGCCCAGCGCCCGTGTGAGCagccctcctcctcctcctgcccgGGAAACCCAAACCGTGAGCGTCGGCTTCACGCAGGACGAACTGCGGGGCGCCGCCAGGAGGAAACTCTCCTCCATCGGCATCCAGGTGGACTGCGTTCAGCCCGTGCTCCGAGAGGAACACACTCCCACCACGAAGTTCCAGTCCATCGGAGTTCAGGTGGAGGACGGCAGGCCgCTGAGCCGCTTCAGCAGCATGGCGTCCAGACAGGAGACGGCTGACGCCGAGACTCAGGACCGGACGGACAGTAAAGCTTTGGAGACCAGCTGCAGCGCTTGCAGCACTCAGACGCTCGACTCTCCCGGCAGCGCAGAGAGAGCGCAGAAATCCTCTTCCGCCATGCCGGAGAGCGTCGAGGCGGCTCTGGACCCGTCCTCTCTGCCGCCTCCTCCTCCGTCTCTGCAGAGCGTGAGCGTGAACGGAGCATCAGAGCAGCCCGGTGCCCCGGCGGCGTGCCTCAGGGACGGACACTGCTTCCTCCGACTCCTACAGGCCGAGACGGGGCGCATGGACGCCTGGTGCCAGCAGATGGAGCAGGAAAGCAAAGATAAGCAGCTCTCAGAAGAAGtgctgGGGAAGATCCGCAGTGCGGTAGGCAGCGCTCAGTTGCTCATGTCTCAGAAGTTCCAGCAGTTTCGAGGCCTGTGTGAGCAGAACCTGGACGTGAACGCTCATCCGCGGCCCACTGCTCAGGACCTGGCGGGTTTCTGGGATCTTCTGCAGCTCTCCATCGAGGACATCAGCATGAAGTTCGACGAGCTCCACCTGCTCAAGGCCAACGACTGGAAACTGCCAGAGAGCAGCAGCAAAAAGGAGGAGAGGAAGCCGGTGAGCGTAACGACGCCGAAGAAAGCACCGAAGCCCAAAGCGGCAGGGCCGAAGGAGAAGAGCAGCGGAGACTCGGCCGCTGATAAACAGAGACAGGAAGCGCGGAAGCGGCTGATGGCTGCCAAACGAGCCGCATCCGAGCGCCAGAACTCTGCCACAGAGAGCGCTGACAGCATCGAGATCTACGTCCCTGAGGCTCAGACTCGTCTCTGAGAgaaacctcacacactcacacacacacacacacacacacacacactcacatgcttcTGAAGCGTATGGAGACACAGAACTACGAACAACACGAACttgggaaataaataaataaataaactgtgtgtCAGCGCGGAGATTCGCGGTGCTGCTGAAGAAGTTTATTACTGTTCTTCTTGTTATAATAAGAATTATTATACAGAGCTGTAATTATCTCACGGAATATATCAAACACCCGCCTGTAAATTGTCCTCATATCGCAGACGCAACGTCGCGTGTGTTCATGTGGGAGTGTGTTCTAAAGAATCCTACGCCCTTCGGTCACTCCGCCCACCCCGAGCCAAGCTGACACGCCCCCAAGCACGCACTCAGGATTCTGCACGTGTGCACTTGTTTTACAGCAATGTGGTCTTCCTCTCCTcgccttcatcatcatcactattattattattattattattattattattactgtcaATGGTTTATCATCTTTTAGGGCATTTGAATCATACGAATGTGAGatatgtaggtttttttttttttttttttttttttgggtgctAATCCGCTTCAACCTTCACACATTTGAAAATTCATTAATTAGACTTCACAACAGTGGCGTTcaccctgcgttcacactagcaagcaacacaCGAGATCCATTTCCTGTTAATCTTCccatttcatttgattttctccattttgtaaCTTGCCATattaggaataaaaaacttcagGGCATGCAgtaataggaaaatagtcaacaatAAAGTGTCCTGTTtcagcagtttgccaacgattacaattatttatttattaaagaatgacgcatACTtgttatccgtttatagttatgcgtaacatccatgaaacaaggtTCGTTTCTGTTACGGCGTTAGCTGTAAACCGTCATTCcgtcaccagtctctcttttttttccttctattcagtttaataaaacaaaaacgcagcttgtcacgttacaagcgtaaagtcctctgtcctgaaaacatggcagaaaacttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307566 lncRNA downstream 1370 23017306 ~ 23018360 (-) True G259812
TU307557 lncRNA downstream 7368 23010849 ~ 23012362 (-) True G259809
TU307564 lncRNA downstream 9180 23006360 ~ 23010550 (-) True G259811
TU307563 lncRNA downstream 46484 22969883 ~ 22973246 (-) False si:ch73-217n20.1
TU307467 lncRNA downstream 231751 22742744 ~ 22787979 (-) True G259724
TU307655 lncRNA upstream 53426 23180382 ~ 23181592 (-) True G259897
TU307824 lncRNA upstream 182059 23309015 ~ 23309614 (-) False e2f1
TU307833 lncRNA upstream 189344 23316300 ~ 23317419 (-) False e2f1
TU307828 lncRNA upstream 205713 23332669 ~ 23335335 (-) False G260021
TU307829 lncRNA upstream 205713 23332669 ~ 23335335 (-) False G260021
XM_034312248.1 mRNA downstream 15123 22986458 ~ 23004607 (-) False pfkfb2a
XM_034312250.1 mRNA downstream 15126 22986458 ~ 23004604 (-) False pfkfb2a
XM_034312247.1 mRNA downstream 15126 22986458 ~ 23004604 (-) True pfkfb2a
XM_034311897.1 mRNA downstream 38744 22961578 ~ 22980986 (-) True si:ch73-217n20.1
XM_026921336.2 mRNA downstream 197533 22813004 ~ 22822197 (-) True LOC113530928
XM_026921349.2 mRNA upstream 54653 23181609 ~ 23186306 (-) True rprd1b
XM_034311678.1 mRNA upstream 65301 23192257 ~ 23240347 (-) False LOC113530288
XM_026920135.2 mRNA upstream 71626 23198582 ~ 23240346 (-) True LOC113530288
XM_026920910.2 mRNA upstream 117773 23244729 ~ 23279510 (-) True ctnnbl1
XM_034311580.1 mRNA upstream 181943 23308899 ~ 23317464 (-) True e2f1
TU306971 other downstream 570303 22446030 ~ 22449427 (-) True G259306
XR_004579748.1 other downstream 1065125 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 1665033 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 1850032 21168986 ~ 21169698 (-) True G258580
TU305957 other downstream 2151772 20830828 ~ 20867958 (-) False LOC117599256
XR_004579695.1 other upstream 71626 23198582 ~ 23240346 (-) False LOC113530288
TU308180 other upstream 636718 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 1374777 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 1378672 24505628 ~ 24508333 (-) False tent5ab
XR_004579701.1 other upstream 1660734 24787690 ~ 24794897 (-) False si:ch1073-157b13.1