RNA id: XM_026920938.2


Basic Information

Item Value
RNA id XM_026920938.2
length 2277
RNA type mRNA
GC content 0.42
exon number 3
gene id gpx7
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24048016 ~ 24055524 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCAGCAACACTCCGTGGCGTTGCGTAGCAGCCGGCGGTCCTTCATGTTGTGAGAAGAAGCTGGAAGTTAACAGTTAAAGCGGAATCACAGAAGATGAAGGTTTTCCTGCGAGCGCTGCTCTTCTTCCTCCTGTCGTATTTCATGGAGGCGAAGCAGAAAGACTTTTACACGTTTAAGGTGGTGAACAGCAGAGGCAGATTAGTTTCTCTGGAGAAATACCGCGGCTCGgtcTCCTTGGTGGTAAACGTAGCGAGTGAGTGTGGCTTCACCCAGGAGCACTATACGGACCTGCAGCAGCTGCAGCGGGACTTTGGACCGTACCATTTCAACGTGCTGGGGTTCCCGTGTAATCAGTTTGGCCAGCAGGAGCCCGGCAGCGATAAAGAGATCGACAGCTTTGTGAGGCGCGTTTACGGAGTCTCGTTTCCGCTCTTCAGCAAAATCGCTGTGGTGGGGACCGGGGCCAACAACGCCTTTAAATACctcacagaggtGACTGGGAAGGAGCCTGACTGGAATTTCTGGAAGTATCTGATTGATGTTGATGGTAAAGTCGTCGGCTCGTGGGGTCCTCAAGTGTCCGTGAAGGAAATTCGGCCAAAGATTGCAGAGATGGTGCGCAAACTCATCATCAAACGCAAGGAGGAGctgtagagacacacacacgcacacacagacagacacacagacacacacacacgcgcacacacacacacgcacacacacacacacacacacacacacgtccatcCACATAAATTTCTTCAACAGAATGTAAAATGTGATACTAAATCAGCACTACTATGAAAaccactctcactcacacacacacacacacacacacacacacacacacacactcactcacactcacacactcacacacactcacacaaattaCCCAGAAGCAAAAAGGAACATATACCATATTTTCCGGATTATAAGACACATCGTTCGCTCTTTATAAATAATACCTTTTAACAGATATTATGATTTAGTGCACAGAGCTGCTGAgtgctgcattctgattggtcagaaggtgtgattagttttctagaacagcagctctgacagtagtgcagctgcaaatcacaggtgtcTATTAATGCACTGGTTCTGATACGTTTATGATAATAAATTGCAGTGCTGAAAAATAGCAACACTAACAGGAGAAAAACTAAACTAGCCTGCACCAGTAGGGGGCGCTGTTGAAAATTATTGCTACATGAATCCGATCTGTACAACAAAACCgttaatatacaatattttattgtttttaatgtaaattatagTCTGGAAAATTTGTTTCAGGAAAGACACTCCCCTAAACCACTAGCCCCGCCCTTTACCCTGACATCAACCATTcagagcttcacacacacacacacacacacacaccagccgcTGTCACACAGAAGAACGTCTAGCATCCATGAGGTGGACTGTGGACATGACACGACACGCTACGCCGTGTTTTTGTAGCGTTGTTGCTACTTTAGCTCTTCCTGATTGGAGCTTTCACGTTTCAGGAAGTAGGAGGAGCTCGTTTTGCTAATCTGTAGGTGTTTGAGATAATCTGagacatgtatgtaatgtgggCGGGGTTTTAGATAATAAAGAGAGGTGGGGGGAGGGGTCAGTTGTTAAAGGAACATTTCAgcgaaaaaaaaatgaaaatgtagccGATTAGCCGAGACACGTTTGCTAATTTAGTTTAGCGCTGTAGCTatgatgctaatgtagctaactagACTTGCTGATGTATAATGATGAACAAAACACTGTGTAGTCAAATGCTGACTCTTGTATCTTGTATAAagtggcggccatcttggaaaacCGAGATCACTTTTTCCATGGTGCAGTTTGGAAAGACTCCGCCTTCAATATTAGGCCCCGCCTCCAGGTTTAAAGTTGATGTTTAAAGCCTGATAGAAATGTTGATTAAGTCTacttttgatttcatttttctaaGTAAAGATGGCAATTTTACTCATCAGATTATAGATGGTTGAAGTGtggatgaaaacaaaaataaaataaaactaaataaaataaaaaaaagaagcaaatatCAGATAATAAACATGTCTCGGCTGATTAATTACATTTGGGTGCATTTTCTATTGTTGGCTTTATGTATAAAACCAGTCGAACGTTTGCACTCGATAGTCTGAATAAatacttttcactttttaaagacATTGTGATAAAAGCTTATGgttgaaatttgtttctaagacaaataaataaataaaaattaataaataaatca

Function

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004602 glutathione peroxidase activity molecular_function

KEGG:

id description
K00432 gpx, btuE, bsaA; glutathione peroxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU308299 lncRNA upstream 17681 24023376 ~ 24030335 (+) True G260410
XR_004579725.1 lncRNA upstream 35012 24010675 ~ 24013004 (+) True LOC117599260
XR_004579726.1 lncRNA upstream 44635 24002549 ~ 24003381 (+) True LOC117599261
TU308096 lncRNA upstream 129625 23917881 ~ 23918391 (+) True G260232
TU308080 lncRNA upstream 178460 23867651 ~ 23869556 (+) True G260217
TU308322 lncRNA downstream 76194 24131718 ~ 24131958 (+) True G260430
TU308323 lncRNA downstream 80270 24135794 ~ 24140619 (+) True G260431
TU308326 lncRNA downstream 90466 24145990 ~ 24146339 (+) True G260434
TU308296 lncRNA downstream 103342 24158866 ~ 24161640 (+) False G260409
TU308297 lncRNA downstream 103342 24158866 ~ 24161640 (+) True G260409
XM_034311922.1 mRNA upstream 80130 23951660 ~ 23967886 (+) False mcoln3b
XM_026921140.2 mRNA upstream 80130 23951661 ~ 23967886 (+) True mcoln3b
XM_026921141.2 mRNA upstream 81332 23951661 ~ 23966684 (+) False mcoln3b
XM_026920473.2 mRNA upstream 126040 23888706 ~ 23921976 (+) True syde2
XM_026920474.2 mRNA upstream 126042 23888706 ~ 23921974 (+) False syde2
XM_026920901.2 mRNA downstream 35598 24091122 ~ 24131107 (+) True slc1a7b
XM_026920900.2 mRNA downstream 35598 24091122 ~ 24131107 (+) False slc1a7b
XM_034311701.1 mRNA downstream 111196 24166720 ~ 24184554 (+) False LOC113530931
XM_034311699.1 mRNA downstream 111197 24166721 ~ 24188371 (+) False LOC113530931
XM_034311698.1 mRNA downstream 111198 24166722 ~ 24188371 (+) True LOC113530931
TU308306 other upstream 15292 24032227 ~ 24032724 (+) True G260415
TU307780 other upstream 658702 23387538 ~ 23389314 (+) True G259993
TU307769 other upstream 664363 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other upstream 664363 23371747 ~ 23383653 (+) False LOC117599309
XR_004579671.1 other upstream 1368466 22671625 ~ 22679550 (+) False LOC113530514
TU308384 other downstream 213053 24268577 ~ 24269267 (+) True G260483
XR_004579660.1 other downstream 569413 24624937 ~ 24634545 (+) False ddx58

Expression Profile