RNA id: XM_026920939.2


Basic Information

Item Value
RNA id XM_026920939.2
length 5024
RNA type mRNA
GC content 0.47
exon number 23
gene id LOC113530701
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22284221 ~ 22305383 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGACACGGGCATCAGTGGGAGCAGGTGCAACTTGCCCCACCTGCATCTGTCATACGGAAGAGTGACAAGTcaccattacacacatttcctgAAGACGACAATGAACCTGCAACACTTCCAGACTTCTCTCTAATCTTTCTTCGACTCGTTTACAGTTCACTTCAGGTTGCTTTTGAAGAGCTGCTCCGGATCCGAACCGATGAGTTACAACGTGACAAGATGAAAGTTTCTACAAGTTCAGGCTTCTTTAGCAAAGTGACTATCTGCGCTGCACTACTTTCAGTGATTGAGTGCAACTTCACCACACGCACCACCATGTCACCTATGCAGAGGAGCCCTTATGGTGACTTTCTTCACTTTGACTCGGCCCCTGACACCATCACAGTCAACTCCACTGTGCAGATCTTGTATACTTGCTCCAGGGCCTGCAGAGTGGGAGTCGAGATTGTGCTTTCCACACCAAAAACAGTTGGACTTGTGACCTTTAGGAGATCATGGATTCATGTCAACCAACTAAAAAAAACTAGAACAAGGACGATTCAGCTCACTTTCCCTCCAGCTGTGGTGTATAAGAGAGACTTTTTCTTCAGACGGACAGTGGAAGCCCGTGATGTGATGCTGAGAGCCTGGCTGGTGCATCTGGATGGAGCAGAAAGCAATAGCAGCCACGTTGGAGTCAGTCAGTACAAGCAATCCATGGTgagaatgtttaaaaatttgGGGACGGTTCCGCCCTCGGAACGTCCTGCCAAATCACCGAGCAGATGCGCTGCATGGGGGGCGGAGCTGATGTGGAATCGGACCAAAGACAGAATAGAGAAGTGCTCTCCTGAGTCAGATGTAGTGAGACTCCTGACTTTCCCTTTTGCAAGCACTGGGGAGAACTATGGAGTCATCCGGACGTTTCCAGCCTTCGCCAACAGAGAGCTGGAGACTGCAAGCCTGCGTGCTCTAGAGAAACCCAGACTGACCGTGTCGGTGTGGTTGTATTTGCTAAAGTGGTGCAGGGAAAAGCTCTGTGGCATCATCAAGCATGTGAGCGAGCACAGGAAATACGCAACACCTCTCCTATTGCTGACTGATACAGGTAACATTGTGGTGCAGGTGTGTTTGACCTCCGGAGTGGAACAGGCGTTCACAGCTCACACAGATCTCCCTCTCCTGACCTGGATCCGGCTGGACCTCTTCATCCAGACCTCAGAGGTGAAGCTCATAATCACGCAGACCGTCTCTGAACATCACCTCATGGAAGCCGTATACAAGTATGATTTTCAGGATGCTGTTCTGTATAATGACACTTCAGGATACTTCGTGATTGGTGGCGGCGTCTACATGCCAGGAATTCACGGTTATGTTGGACCAGTTAAATATTACCGCTTAGGTTCTGAAATGGTGGTGAACCCTCTGACTCCAGAGAGAACACTGAAGGAACTGAACGAAGCCCACAGACGGTGTGAGGATGTTAAACTGATCACTGAAGGCTACGTAAAAGCTCTACAAGACAGCAGGGCCAGTCTCGCCAACGatgtgtgtgtgtcatattaCGAGCAGTTAAGGAGGACGTTTGTCCAGACGAGGTGCATGCAGACATGGGCCTGGTTCCATCAGATGAAATACAGTGCTGCACTGAAAATACTGAGAACGCATGAGGAAGAACTGATGTCAGGTCCATGGAGCAGCAAGAAAGCATCACTCTTTGGCCAGCACCTCTACCAAGATGTGGTAAAGAGGTTAGCTGATGCCGGTTTGAGAGACATCGATACCTCACTAATAGAGCTGCTGCAGCTGAGCTCCTGCTGGGGTCATCACCAGGCTTCTCTCATGCTCGCCACTTTACACCTTTCAGGTCTCGGAGTGCCAGCGGACCAGGAGAAGGGCCACGTGTACAGCCTGATGGCCGGAGTAGAAGACGAGCGTCTGGCTCTGCTGCATTTGGGCTACAAGCACATGGAGGGTCTGGACGGCTTCCCTAAGGACCCGGACATGGCATACGGCTACTACGCCAATGTGGGAAAGCAAACCAGCATCGACCACAATAAAGTCCAGGACTCAGAGCAACGCCTCACTGAGCACGTGCATTTAACCAATCCAGAGGATCTCCAGATGCAAGCCGGCGAATCCGATGACATCATACAGTTTCTCAAACACCAGGCAGAGAGAGGAGACATCAAGTCCCAGaaaaCCCTGGCACGGATGTCATTCTTTGGCAGTAATGGCATGACGAAGGACATCAGCGCAGCTCTGAAGTGGTACGCCATGAGCGCAGTGCAGATGACGGACGCTTCAGTCATGTATGACTACGGCATCCTGCTGCTGAAGGGAATTGGAGGGAAGAAGAACAAAACCTTGGCATTAAACCTCCTGGAGATGGCGGCTGACATGGGTTACGTGGATGCTCTGAATGCTCTAGGCTGGTACCATGGCACTATGGAACAAAACGAAAGAAAGGCCGCATACTACTTTGACCTGGCTGCTCGTAACGGCAGTCGAGACGGTGTGTTTAACCTGGGTGTGTATCACCTGAACGGCGCCATCCCAGACTCGCCAGGCAAGAACGAGacagCTGCGTTTCAGTGTTTCCTGAAGGCGGGTGAGCTGGGTCATGTGGAGGGCGCAGTGGAGGCTGCATCATTTCTCTCGAGAGGTCACTTACCGGACATGCACAGAGATCCTGAGAGAGCCGTGACTCTCCTGAAGCCGATCAGTGAGAAGAACGGCCACCTGGGCTTCACGGTCCGAGACGCTCTGAAAGCATTTCAGCACGGGTCATGGGATGAGGCCTTGTTGAAATACGCGATGCTCGCCGAAACTGGCTTTGTTGTGGCTCAGATCAACGCTGCACACCTCTGTGAGGTGCTGAAGCACAGTTCTGCATGCCAGTGGAGGTACCATAACTACTCCACCCATAACCACGCTCCACATGAATCGGgtctgCTGAAGATGGGAGACCACTACAGTGCAGTAGGTGACATGGTAAAGGCCATAGCGCTATACAGCAGAGCAGCACTGAGAGGCAGTGCTCagGGCATGTACAACCTGGCAGTTTTGACTGAGGAAGGACACAACATCCCCGCGAATGTACTGGAGCAAATGAAGATCTCGACTGAGCTTCAGCTGAACAAAAGCACTGTAGTGGAGAAACTCTTACTCAGATGCAGGGAGCTGGAGGGTAAGGGGGAGGAAATGAGTCCCTGCTCTCTGGCTCTGTTTGGACTGCGCATGGCCAGAGCGTGGCACAGCTTCACCAGCAGCACCGTCCACCTCGCAATGATCTTCACCACTCTCATCATGTTGGTGCTCGCCGTCCTGACACAAAGTGCACTTGCTCACTACTCTGCAGATCTTCCACGCAGTATTCCTAACCAATCATCACTGCACCAACGGGAATCACCTCGCCTCAGCCAAGTCAGAGGACGTGAATCAGACACTGCAACAGATCAGGAAGGGTCCTCAAGAGTCAATCGAGTTCTGCGGATCGGTCAAACCTACGTGACCAGACATGTCCGATCCCTGCAGGAGGCAGCCGATTTGGTCATCACGGcaactggagtgtgtgtgtgtgccttgtgCACAATGTTTGTCTCTCATCTGCTTTAACTGTGTAGAAGAACAATACAAATGTGAAGGagaaagtttttaaaaagactGATCTAAACTGGTCCTTGGGTAAAATAACAGAGCCATcggtttttaaatgtttgaattaAACAGTAAAAGAGAAACCAGTTCTCTATGTGATATAATAACCCCTGAGGAAGTGGGTTGTAGTGCACAAAGCTGCAGAACAGCTCCATCTtctgacagaaacacagaccTGAGTCGATAACATTAAACcagtttttcagtttattatcaaattcaaacatacaaacaattttGCTTGCAAAATTTACAGAAACAATATTATCAGCAGTGAACaaatctttgattttttttttttttagctagtcAGTGCTACAATATCCTTGCTTAGTCTTGTATTTTGCTTAGTGTGTACTCAAGTAGTATTATTCTAGGATGAGGTCGTGCTATGGTTttgaaaatacagtacagttCTTTTAAGCCCCACAGACAAAAAAACTAGGCACTGAGCCTCAATCCCACAGAAAAcgagtgaggaaaaaaaataggccAGGACTCTAGCCGAGTCTAGCATTCATGCTGAACACCAACAATTGGAAAAGctaattcactgaaggggaaaggacgtgggatgtgaaaaatgtatttgcttCAAATAGTGCTTACTTTCACGCCAACTATTTTTTTgaagtggatataaaaagttgacacacccctgttaaaataaaagttttttctttcttttttttcctgtctgttttacacttgaattttgttgattGCTGTTTCACAGTAAAGGTGGGAAAAAAcgtctgacatgatttatcttggtttaatttttaccatcacaaaaacctgccattttttCAGGGGTGCGTAGACTTTGTATATCTGCTCTAGGCGAGCTAGGAATTGACTCCTTAAAAACTAAATCCTTGAAAGAAGGATttcatgaaagaaaagaaaacaagatggCAGGACTGTGGATGCTTTGTGGACAAAAGCATAGTGTAGACCACACATgagggtttttgtggtaaaattctgtctttttctggatttatttttgttagcgCCTCTGTTAAGACAAGGAACAAGAgtaaccaagtattaaaatagaaataacaCGTGACACATTTTTGTCCAAAGTGTGAACAcctcacattttaaacattaaaagccAGATTTGAAAAATCGTTTACCACAGTAAGCTGTATGTgtgatttaaacaaaaatattacatagcTACACACCAAAAAGAGATTTTAAATTTCTCTTTCTAAGCTAATAATACAACAACTTGACTCAAcaacttgactttttttttttacaaatagcCAAagcaaagtttatattaaactGTGTTACAGAAACATTCATCCACTGCACCATGCAAACTATCTGTTAGAATCTTAAATAAACACACCATGTTTCAATGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306775 lncRNA downstream 248258 22031278 ~ 22035963 (-) False cpeb2
TU306772 lncRNA downstream 263070 22016486 ~ 22021151 (-) False cpeb2
TU306588 lncRNA downstream 477461 21805096 ~ 21806760 (-) True G258966
TU306582 lncRNA downstream 484977 21798836 ~ 21799244 (-) True G258961
TU306562 lncRNA downstream 531769 21751405 ~ 21752452 (-) True G258942
TU306958 lncRNA upstream 36478 22341861 ~ 22371089 (-) True G259294
TU307005 lncRNA upstream 117209 22422592 ~ 22424242 (-) True G259337
XR_004579704.1 lncRNA upstream 162280 22467663 ~ 22469753 (-) True LOC117599239
TU307420 lncRNA upstream 347955 22653338 ~ 22656929 (-) True G259692
TU307467 lncRNA upstream 437361 22742744 ~ 22787979 (-) True G259724
XM_026920418.2 mRNA downstream 235833 22016047 ~ 22048388 (-) False cpeb2
XM_026920417.2 mRNA downstream 235833 22016047 ~ 22048388 (-) False cpeb2
XM_026920416.2 mRNA downstream 235833 22016047 ~ 22048388 (-) False cpeb2
XM_026920415.2 mRNA downstream 235833 22016047 ~ 22048388 (-) True cpeb2
XM_026920914.2 mRNA downstream 269992 21999441 ~ 22014229 (-) True LOC113530687
XM_026921116.2 mRNA upstream 245173 22550556 ~ 22569855 (-) False epm2a
XM_034312051.1 mRNA upstream 245173 22550556 ~ 22569001 (-) False epm2a
XM_026921115.2 mRNA upstream 245173 22550556 ~ 22567225 (-) True epm2a
XM_026921113.2 mRNA upstream 245182 22550565 ~ 22569727 (-) False epm2a
XM_026921251.2 mRNA upstream 265063 22570446 ~ 22579027 (-) True fbxo30b
XR_004579748.1 other downstream 329616 21929175 ~ 21954605 (-) False fyco1a
trnaq-uug_7 other downstream 929524 21354626 ~ 21354697 (-) False trnaq-uug_7
TU306159 other downstream 1114523 21168986 ~ 21169698 (-) True G258580
TU305957 other downstream 1416263 20830828 ~ 20867958 (-) False LOC117599256
TU305550 other downstream 2012314 20252170 ~ 20271907 (-) True G258077
TU306971 other upstream 140647 22446030 ~ 22449427 (-) True G259306
XR_004579695.1 other upstream 893199 23198582 ~ 23240346 (-) False LOC113530288
TU308180 other upstream 1458291 23763674 ~ 23764163 (-) True G260310
XR_004579755.1 other upstream 2196350 24501733 ~ 24508467 (-) False tent5ab
TU308938 other upstream 2200245 24505628 ~ 24508333 (-) False tent5ab

Expression Profile