RNA id: XM_026920957.2



Basic Information


Item Value
RNA id XM_026920957.2
length 507
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC113530713
representative True

Chromosome Information


Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22742054 ~ 22744025 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GTGCGCATGCGCGTGGGTTAACGGGACACGTCAGGACGGAGCAGGGTTCGGTGGAAGCTGCACGAGCTGCTAGAATtcaactcagaaaaaaaatggcgaattctgtgatttctgtgatttcCAAGTTTATAGAGGAGTACGCTAGTAGCACGTCGGCTAAACTGAAGCTAGTAGACGCGTATTTGCTGTACATCCTGCTCACAGgcgctttccagtttctttatTGCCTGCTGGTTGGTACATTTCCGTTTAACAGCTTCCTGTCCGGCTTCATTTCCTGTGTGGGATCCTTCATCCTTGCAGTTTGTCTGCGTATCCAGATCAATCCTCAGAACAAAGCAGAGTTCTTATCCATCTCACCGGAAAGAGCCTTCGCCGACTTCCTTTTCGCCCACACCGTGCTCCACCTGGTTGTCATCAACTTCGTCGGTTGAAAGGATGCCCTTGTGAATGTGAAGTACATGATTGACTGAAGACTGAAGACCTTTCACCTCTAACAAAcgataa

Function


GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008250 oligosaccharyltransferase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity molecular_function

KEGG:

id description
K12668 OST2, DAD1; oligosaccharyltransferase complex subunit epsilon

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU307080 lncRNA upstream 156245 22584557 ~ 22585809 (+) True G259403
TU306925 lncRNA upstream 239149 22502687 ~ 22502905 (+) True G259268
TU306924 lncRNA upstream 260954 22480557 ~ 22481100 (+) True G259267
XR_004579757.1 lncRNA upstream 511374 22227964 ~ 22230680 (+) True LOC117599300
TU306766 lncRNA upstream 591255 22148905 ~ 22150799 (+) True G259131
TU307196 lncRNA downstream 95192 22839217 ~ 22841739 (+) True G259498
TU307249 lncRNA downstream 269359 23013384 ~ 23015896 (+) True G259536
TU307252 lncRNA downstream 277945 23021970 ~ 23022448 (+) True G259539
TU307254 lncRNA downstream 282421 23026446 ~ 23064569 (+) True G259540
TU307418 lncRNA downstream 533409 23277434 ~ 23277909 (+) True G259690
XM_026921103.2 mRNA upstream 7031 22721758 ~ 22735023 (+) True LOC113530788
XM_026920613.2 mRNA upstream 25908 22709993 ~ 22716146 (+) True LOC113530513
XM_034311614.1 mRNA upstream 43150 22693240 ~ 22698904 (+) True LOC117595661
XM_034311612.1 mRNA upstream 61512 22671627 ~ 22680542 (+) True LOC113530514
XM_034311613.1 mRNA upstream 62031 22671398 ~ 22680023 (+) False LOC113530514
XM_026921443.2 mRNA downstream 1041 22745066 ~ 22755933 (+) True gmeb2
XM_026921444.2 mRNA downstream 1047 22745072 ~ 22755933 (+) False gmeb2
XM_026921253.2 mRNA downstream 31706 22775731 ~ 22783461 (+) True stk35
XM_026921401.2 mRNA downstream 90497 22834522 ~ 22851428 (+) False LOC113530963
XM_026921402.2 mRNA downstream 90497 22834522 ~ 22851428 (+) False LOC113530963
XR_004579671.1 other upstream 62504 22671625 ~ 22679550 (+) False LOC113530514
trnal-uaa_2 other upstream 430166 22311806 ~ 22311888 (+) True trnal-uaa_2
TU306357 other upstream 1199800 21538254 ~ 21542254 (+) False LOC117599233
TU306101 other upstream 1511183 21228320 ~ 21230871 (+) False si:ch73-290k24.5
TU305940 other upstream 1836981 20903147 ~ 20905073 (+) False ubxn10
TU307769 other downstream 627722 23371747 ~ 23383653 (+) True LOC117599309
TU307771 other downstream 627722 23371747 ~ 23383653 (+) False LOC117599309
TU307780 other downstream 643513 23387538 ~ 23389314 (+) True G259993
TU308306 other downstream 1288202 24032227 ~ 24032724 (+) True G260415
TU308384 other downstream 1524552 24268577 ~ 24269267 (+) True G260483

Expression Profile