RNA id: XM_026920976.2


Basic Information

Item Value
RNA id XM_026920976.2
length 2383
RNA type mRNA
GC content 0.48
exon number 13
gene id arhgef3l
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10470499 ~ 10479864 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGACATgtaagaggaagagaggaggtgTAGAGTTGGTAGCGCACACAAAAAATTCTGCTCTCTTACTTTCCCCGAAGAGGTGGGACAGGTGTTTGACAGACCCAGAGGACTGTAGAAATTGCATTTTGATCGTGTTTGGATTTGCTGGAGTGCTAATATCTAAAGATGTTATGAAAGATACAAAGATGGAGCTTGAAGAGACGGAGACCAATTTGTCACCTTCCTGGTCTCCTGTATCAAGAGAAAGACTCCTGACATGTGCCAACCTTTCTGAATTTGCAGGGaaaaaaaggaaacaggacCCAAGCAGTGATGCTGAATTTTCAGCCCGAGCCTCAGAAGACTATGATGAAGATGACTTTCCCACTGATCCCCCACACGACTCCGAGGGACCGTGTAACAAGAGGGTCAAACCAGTGGACAGAAGTAGTGGAGTTACAGGCATTATAACGCCAATGAAGACCCCTGCACTGAAACGGTTGGGACAGTCCATCCAGCGGTCCATCAGCTTCCGTACAGAAGCGCGGCCGATGCCACCGATGCCGATTCGGACTCGTCAGAAGGCTTCTTCTTTCCCACGGCGACGCAGCAGCCAGCTGTGGAGTGACACTGTGGACAGCCTGAGCCAGGATCTTAGTGCCAAAGAGATTAAGAGACAGGAGGTGATTTATGAAATGACCCAAGGAGAGAAGCAGTTGATAGAAGACCTCAATTTGGTCAAAAAGGTTTACTATGAGCCAATGCTGAAACTGGACATCATGACAGAAAGTGAACTGGGTCAGATATTTGGGACTCTCGACTCTCTGATTCCTCTCCATGAAGATTTTTTGGCTCGTCTGGAAGGGCTGCGAGGGTCGGAGAAGACAGTGGGGGAGGTTGGGCCGACCCTGCTGGACTGGTTCCCTTGCCTGGATGCCTATATCACATACTGCTGTAACCAAGTGGGTGCCAAAGCCCTGCTAGACCAGAAAAAGCAGGTACGGCGTGTTGAGGAGTTCCTCCGCTTGTGCCAAGAGTCATCCTTCAGCAGGAAACTGGACTTGTGGAACTTCCTGGATCTGCCACGCAGTCGTCTGGTGAAGTACCCACTACTTCTGAAGGAGATCCAGAAGAGTACGCCGCATGATCACCCTGATGAGGACACACTGCCTCAGGCCATGGAGCTAATCCAGAGCATCATTACTGAGGTGAACCGTAAGACAGGCGAGGCTGAGTGTCAGTTTTACAAACGAGGTCTGTGCTACCCAGAGGAGGGGCAAAGAGTTCCAGAGATTCATGCCTCACGCTTTCTCTACTGTCATGGTGAACTCAAGAGCACCAAAGGACAGAAGCTGCATGTGTTCTTGTTCGAGCTGGTGCTGGTTTTGACTCGCCCAGTCGTGCAGGACAAGGACGGCATGGTGCAGTTCCAGGTTTACCGTCAACCCTTACCTGCTGCCCAAATCCTGCTGGAGGACCTGCCTGATGGAGAGGCCAGCAGTTCTGGATCCTTCCGTGGTGCCTTCACTGGCAATGACAAAGTGAAGAACTGCTTCCGTGtgagcagcagggggcgcaCGAAGGCTCAGTCGCACAGCCTGCAGGCCAACGACTCCTTCAACAAGCAGCAGTGGATTTCCTGCTTGCGCCAAGCCATCATCCAGTCACGAGACAGAAATGCTCAGGCTAGCCAATCCAAGGCCCACCTAAGCCCTGAGCCCCCGCTCGACCACATCGCTGAACTGAGCCTCAATTCTGATGTGGAGATGATGGACACATAGGTCAGAGGTGACATCACGTTACAAGGACAAAGTTAATGTTCCCGGTTCATACCGTCACACCTTCTATGCAAGGAACTGATAAAGTTTACAAACTTTCTTATTATCAGAGTGAAAGGTATTTATATGAATGGCTGCCATGTTTAAGGCACAAAGCTGTGTATTACGGTTCCTCTGAGCCTAACCCTGTATGGTTAGACAGACTGAAGAATGTGTAAAGTGGTCCACTCACATCTGCTTTCTGATTGAGCAAGTAATTTTCTATTAGGCAATGAGTCCATGAGATCATTCCTGTTTCCTATGTAGCTTGTAGATTTATAATTAAGGCTCACAAACAGTAATTTGAATAGTATGATAATGATATACAGTGCATTATGCATTTAGTTACTGCTTGTCAGCAATGTGATAGTGTCTGATGTTGAATGTGAATGCCATTgcagaaatttttaaaaaaagacatttttattacaaactttTTTCCTCTGTTAAACTGACAGTGTTCATGTGAAGTTGATTTATCAAGTATGACAGGGTTTGACTATGACAGGGTAGCAGAGATGGAGCTATTCACTTATGAATTTTGGATTTCTGTgccataaataaatgttattcgATTGTCTATGGA

Function

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process

KEGG:

id description
K19842 ROM1_2; RHO1 GDP-GTP exchange protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299029 lncRNA downstream 73759 10396395 ~ 10396740 (-) True G252610
XR_004579740.1 lncRNA downstream 181815 10244041 ~ 10288684 (-) False LOC117599279
TU299250 lncRNA upstream 175450 10655314 ~ 10655522 (-) True G252783
TU299304 lncRNA upstream 230531 10710395 ~ 10711491 (-) True G252833
TU299329 lncRNA upstream 299121 10778985 ~ 10779600 (-) True G252856
TU299332 lncRNA upstream 302271 10782135 ~ 10782588 (-) True G252859
TU299403 lncRNA upstream 385496 10865360 ~ 10865700 (-) True G252920
XM_026920979.2 mRNA downstream 703 10460694 ~ 10469796 (-) False usp21
XM_026920978.2 mRNA downstream 953 10460694 ~ 10469546 (-) False usp21
XM_034312046.1 mRNA downstream 953 10460694 ~ 10469546 (-) False usp21
XM_026920977.2 mRNA downstream 953 10460694 ~ 10469546 (-) True usp21
XM_026921324.2 mRNA downstream 11691 10438844 ~ 10458808 (-) False ccdc30
XM_026920773.2 mRNA upstream 626 10480490 ~ 10496127 (-) False uba1
XM_026920772.2 mRNA upstream 626 10480490 ~ 10493582 (-) True uba1
XM_034311853.1 mRNA upstream 626 10480490 ~ 10493581 (-) False uba1
XM_034311542.1 mRNA upstream 17854 10497718 ~ 10529717 (-) False camkvl
XM_026920074.2 mRNA upstream 17854 10497718 ~ 10529717 (-) True camkvl
XR_003403171.2 other downstream 965 10460694 ~ 10469534 (-) False usp21
TU298725 other downstream 440506 10029492 ~ 10029993 (-) True G252373
XR_003403155.2 other downstream 1891899 8566656 ~ 8578600 (-) False ttll10
TU296847 other downstream 2960752 7476274 ~ 7509747 (-) False ctnnbip1
TU296070 other downstream 4162736 6304844 ~ 6307763 (-) False rps26
TU299234 other upstream 156659 10636523 ~ 10638718 (-) False sinup
TU299470 other upstream 534100 11013964 ~ 11015630 (-) False LOC113530950
trnae-uuc_4 other upstream 779179 11259043 ~ 11259114 (-) True trnae-uuc_4
trnan-guu_24 other upstream 793466 11273330 ~ 11273403 (-) True trnan-guu_24
TU299993 other upstream 976157 11456021 ~ 11462706 (-) False LOC113530309

Expression Profile