RNA id: XM_034312046.1


Basic Information

Item Value
RNA id XM_034312046.1
length 1893
RNA type mRNA
GC content 0.44
exon number 11
gene id usp21
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10460694 ~ 10469796 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGcatgtgatgtattaaaaaaaaaaaaatcacatgcacCCCTTGATGTCGCAATGCAGTTTGTTCCTGTCAAattacttcattttatttatcactgGTGTCTTTatgcaatgtgtttttttaaattttttttttttaattgatacCAGCTATTGCTCCACTGCTGATCACATTCTCAAATTTGTCTTTTGCACATTGCATGGTGTAAGTGTAGACTGTAACGGCTCAATGCTTAGAACACGGATGGACACCTCATGCCAGGCCCTGTGTCGCTCACTGGTGAGCCAAAATGAAAATCTAGACATCTCACAGTCGGTGCTCTACACCTCCCTCATGGGCTTGTTGCTGGTGGCTGACAAAGAGAGAGAGCTAACGCTGGGCAGTGGACGAGTTGGACTGCATAATGCTGGGAACACAtgTTTCCTGAATGCCATTGTGCAGTGTCTCTCCCACACCCAGGGTCTTAGAGACTACTGTCTGACTAAAACCTACCTCCAGGACATGTGCTCCAGTCAAGAGCCAGAGCTGATGAATGAATTCACCAAAGTTTTGGAAGGACTGTGGTGCACAGATGAAGGGAAAAGGCCAGTAAATCCTGAGCAGTTCTACTGTGTTTTTAAAGAGGCTATGCCTTACTTCACTGGATACAGTCAGCAGGATGCTCAGGAGTTCTTGCGATTCCTTTTGGACCGGTTACATACAGAAATCAACCGCCGATCCTCACATCACGCTGCCACCTCTACCAGTCCTGAGCCCAGCTACACCCGATTCAGGTACACAAACAAGAGGTCTGAGCTAAAAGAAGCAGCAGCTATTCAGCCTTATAGACATTCAATTCCTACACTAACTATTCAAACTAGGATTTCAGAAGAAGCAGCTGCTATGTGGAAGAGACATGTGGACAAGGATGACAGTATAATTGTAGGACAGCTGCGCAGCTCGCTGCACTGCTCTGTCTGCTCACACTACTCCAACACCTTCGATGTGTTCTGTGATTTGTCGCTGCCTATCCCAAAGACATGTGACTCCAGAGCAGGTGTGACCCTTCGGGAATGTTTGGATCTGTTCTCACATGAGGAAAAACTCAGCAAAGAAAATTCACCTATGTGTGAGAAGTGTAATCGTCACACAGAGACCACAAAAACTCTAACCATCCAGAGATTCCCTAAAATCCTGGTGATACACTTAAAGCGCTTTACAGCAACAAGGTATTCAACCCGGAAAAACACAGTACCAGTGTCGTTCCCTCTTACTGATCTTGACTTGGGACCATATGGAGCGAGTGACTGTGGCCCAGTGCTGTATGACCTATATGCTCTATGCAACCACACTGGCACTGTGAACATGGGTCACTACACAGCTGTCTGCCAGGAAGGAGGAGGCTGGTGCTGCTATAATGACTCGTGTGTTACCCAAATATCTGAGGACCAGCTTCAATCCTGCCAGGCGTATCTTCTCTTCTACAAACTTAAAAACAGCACGGCCTCCAGGAAATGAATCTCTTTTACTGGACATTAGTAGGCAATTCCACTCCCAAGGGAAAGAAGTTTATGTGGCAGTGTTCACAGACCATTCAGGAGAAACATGTTAGAGGAAACGTGGATTCAGTGAAGCCTGCTCATTGCTCTCCCATTGAACTGCCAGCAAAACTCTTTGTTATATTCAAAGTACTTGGATTATTTTTTGGTGATTTAAACAggtttgtttaaacattttctgcTAGGCCACAggcattgttgttttttttaaattaaaaacatttgctgCAACACAGAAAATGTGCACAGACAATGAATCCGTAAAACTGTATACCTCTATTTTGTTAAAGTAAACTTGTGTTTATGCACGGTATGCAGCTGAACAATAATTTAACAAAAGCACAGCCTAGTCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299029 lncRNA downstream 63954 10396395 ~ 10396740 (-) True G252610
XR_004579740.1 lncRNA downstream 172010 10244041 ~ 10288684 (-) False LOC117599279
TU299250 lncRNA upstream 185768 10655314 ~ 10655522 (-) True G252783
TU299304 lncRNA upstream 240849 10710395 ~ 10711491 (-) True G252833
TU299329 lncRNA upstream 309439 10778985 ~ 10779600 (-) True G252856
TU299332 lncRNA upstream 312589 10782135 ~ 10782588 (-) True G252859
TU299403 lncRNA upstream 395814 10865360 ~ 10865700 (-) True G252920
XM_026921324.2 mRNA downstream 1886 10438844 ~ 10458808 (-) False ccdc30
XM_026921322.2 mRNA downstream 1886 10438844 ~ 10458808 (-) False ccdc30
XM_034311758.1 mRNA downstream 1886 10438844 ~ 10458808 (-) False ccdc30
XM_026921321.2 mRNA downstream 1886 10438844 ~ 10458808 (-) True ccdc30
XM_026920288.2 mRNA downstream 39892 10412726 ~ 10420802 (-) True si:ch211-112c15.8
XM_026920976.2 mRNA upstream 953 10470499 ~ 10479864 (-) True arhgef3l
XM_026920773.2 mRNA upstream 10944 10480490 ~ 10496127 (-) False uba1
XM_026920772.2 mRNA upstream 10944 10480490 ~ 10493582 (-) True uba1
XM_034311853.1 mRNA upstream 10944 10480490 ~ 10493581 (-) False uba1
XM_034311542.1 mRNA upstream 28172 10497718 ~ 10529717 (-) False camkvl
TU298725 other downstream 430701 10029492 ~ 10029993 (-) True G252373
XR_003403155.2 other downstream 1882094 8566656 ~ 8578600 (-) False ttll10
TU296847 other downstream 2950947 7476274 ~ 7509747 (-) False ctnnbip1
TU296070 other downstream 4152931 6304844 ~ 6307763 (-) False rps26
XR_003404646.1 other downstream 5312562 5148053 ~ 5148132 (-) True LOC113545697
TU299234 other upstream 166977 10636523 ~ 10638718 (-) False sinup
TU299470 other upstream 544418 11013964 ~ 11015630 (-) False LOC113530950
trnae-uuc_4 other upstream 789497 11259043 ~ 11259114 (-) True trnae-uuc_4
trnan-guu_24 other upstream 803784 11273330 ~ 11273403 (-) True trnan-guu_24
TU299993 other upstream 986475 11456021 ~ 11462706 (-) False LOC113530309

Expression Profile