RNA id: XM_026920987.2


Basic Information

Item Value
RNA id XM_026920987.2
length 1536
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC113530729
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20510244 ~ 20514195 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGCGTTTGAGCGCGAATCGTGAGCCAATCGCAGGCTGCAGAGGGCGGAGCCTAAGCGCTTCATTTAATGTATAGTCGCGGTTCGTTTTTCTTGCGATTTCATCGGCTAGTGTGTTGTGCAGTTCGCCATGTCGAAAGAGGGCCAGCCACGAGAACCGGAGCAGCTCCGGAAGTTGTTCATTGGGGGCCTCAGCTTCGAGACAACAGACGACAGCCTGCGCTCTTATTTTGAGCAATGGGGCACGTTAACCGACTGTGTGGTTATGAGAGACCCGAACTCCAAGCGCTCCAGAGGCTTCGGTTTTGTCACATACTCCTGTGTGGACGAAGTCGATGCCGCCATGCAGGCACGTCCTCACAAAGTCGATGGTCGTCTTGTAGAGCCCAAACGTGCTGTGTCTAGAGAGGATTCCAACAAACCTTTTGCACACACCACAGTGAAAAAGATCTTTGTGGGTGGCATTAAGGAGGATACAGAAGAGAGCCACCTACGAGACTACTTCCAGGAATTTGGAAAGATCGAAGCAATTGAAATAATGATCGATCATAAGACTGGCAACAAAAGAGGCTTTGCGTTTGTTACGTTCGATGATCATGATGCTGTGGATCGTATCGTTaTTCAAAAGTACCACACAATAAATGGTCATAATTCAGAAGTGAGAAAGGCAGTGTCTAAACAAGAGATGCAGAATTCATCAATGAACATGAGAGGACGTGGAGGTGGAAACTTCGGTGGACGATATGGCAACAATGACTTTGGAGGAGGCAGAGATGGATTCAGAGACGGATTCCGAGGAGGCAGAGGTGGTGGATATGGAGGTGGAGATGGCTACAACAATGGCTTTGGAGGCGatgGTGGCTATGGCGGTGGTGGCTCTGGCTATGGGGGCAACCGCGGTGGAGGATATAGCGGAGGTGGACAAGGCTATGGAAATGGCGGTGGAGGATATGGTGGTGGAGGATACAGTAGCGGTGGCAATGGTTATGACAACTATAACAACGGCAACGGAAACTTTGGTGGTAACTTCGGAGGTGGAGGCGGCGGCGGTGGTGGTAGCAGCAACTACAGTGACTTCGGAAACTACAACAACCAGCAATCAAGTTTTGGCCCCATGAAAGGAAACTTTGGAGGAGGCGGCAGGAATAGCGGCCCATATGGTGGTGGATATGGGGGTAGCtcaggtggaggtggaggctATGGCGGAGGTTCTGGTGGAGGATATGGTGGAAACTCTGGCGGTAGACGATATTAAGTCCTTTAAAGGACTCAGTACTTAGGAGAGGAGACAGGAGAGCGAGAGGGCTGACAGGGAAGCGGCAGGTTTACTCCCTAGATCTGCTCAGCCATTCAGAAGAGATGTACAGTAGTGCTGTCACAAGCAGGACTTTTGTTTTCGTGTGTGGTTGTGATGTcgagttttttattttctttatggGATGCATTCCATATGCGGTTTTGTAGAAGTACTTTATTCTGCTATTCTAATTATGTGTGACTCAAGAAATCAAGTTGAAATAAAGCGACttccagttttt

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305574 lncRNA upstream 123431 20369995 ~ 20386813 (+) True G258097
TU305577 lncRNA upstream 130910 20369995 ~ 20379334 (+) False G258097
TU305179 lncRNA upstream 401018 20108390 ~ 20109226 (+) False G257803
TU305180 lncRNA upstream 401018 20108390 ~ 20109226 (+) True G257803
TU305178 lncRNA upstream 406204 20101008 ~ 20104040 (+) True G257802
TU305640 lncRNA downstream 54412 20567790 ~ 20576789 (+) True G258156
TU305646 lncRNA downstream 98163 20611541 ~ 20657067 (+) True G258162
TU305792 lncRNA downstream 150304 20663682 ~ 20680938 (+) True G258273
TU305795 lncRNA downstream 168992 20682370 ~ 20756538 (+) False G258275
XR_004579728.1 lncRNA downstream 183607 20696985 ~ 20699668 (+) True LOC117599265
XM_026921098.2 mRNA upstream 63262 20439254 ~ 20446982 (+) True hoxc1a
XM_034311741.1 mRNA upstream 79191 20403301 ~ 20431053 (+) False hoxc3a
XM_034311742.1 mRNA upstream 79191 20415683 ~ 20431053 (+) False hoxc3a
XM_026920558.2 mRNA upstream 96383 20411373 ~ 20413861 (+) True hoxc4a
XM_026920561.2 mRNA upstream 107701 20399696 ~ 20402543 (+) True hoxc5a
XM_026921356.2 mRNA downstream 24328 20537706 ~ 20544797 (+) True copz1
XM_034311779.1 mRNA downstream 72789 20586167 ~ 20610713 (+) True lima1a
XM_026920825.2 mRNA downstream 72789 20586167 ~ 20610713 (+) False lima1a
XM_034311781.1 mRNA downstream 72811 20586189 ~ 20610713 (+) False lima1a
XM_026920824.2 mRNA downstream 76339 20589717 ~ 20610713 (+) False lima1a
TU305571 other upstream 111530 20390809 ~ 20398714 (+) True G258096
TU304946 other upstream 1031349 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 1477256 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 1598530 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 3389303 17071136 ~ 17120941 (+) False itga5
XR_004579743.1 other downstream 389727 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 389769 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 714942 21228320 ~ 21230871 (+) False si:ch73-290k24.5
TU306357 other downstream 1024876 21538254 ~ 21542254 (+) False LOC117599233
trnal-uaa_2 other downstream 1798428 22311806 ~ 22311888 (+) True trnal-uaa_2

Expression Profile