RNA id: XM_034312053.1


Basic Information

Item Value
RNA id XM_034312053.1
length 2879
RNA type mRNA
GC content 0.41
exon number 6
gene id cbx5
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20499278 ~ 20509708 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACCAGTTTTACGCTGCAGGGGTGACGTTTGTGCCGCAGGTTTAAACAGCAATAATAACATCAGACCCAGTTGGCTTGCTTTGAAATAGGAGCATAGAGGGATCCTTTCCCTtcctcactcagtcactctgtTACTTGTGAGTGGAAAAGAAGGCATTTGAAGCAGCCATGGGAAAGAAGAATCAGAACCGTGAAGATGACGAGTCTGCGTCCACAGACGAAGAGGAATACGTGGTGGAGAAGGTCTTGGACAGGAGGGTAGTAAAGGGCCGAGTGGAGTACTATCTTAAATGGAAAGGTTTTTCAGACAAACACAACACATGGGAGCCAGAGAAAAATCTCGACTGTCCAGATCTCATCGCCGAGTTCATGAAGACATACAAAAAGGGCGGCAGCGGTACAAGCACTCCAAGCAGCGGGACCAAACCATCCAGTGCAACTCCCACTCGCGCCAAAGACGCCGGCAACAAGAGGAGAAACTCAGACGAAGAAGAGGAGGGCGGCAGTAAGCAGAAGCGGAAAAAAGAGGATGAGATCCTAGTTGCAAGAGGCTTCGAGAGAGGCCTGGAGCCAGAGAAGATCATTGGTGCAACCGACTCTTGTGGGGACCTTATGTTCTTAATGAAGTGGAAAGACTCGGACGAGGCGGACCTTGTGCTTGCAAAGGAGGCCAATCACAAGTGTCCCCAGATCGTCATTGCTTTCTACGAAGAGCGTCTCACTTGGCATGAGGAtggagagaagaaggagaagggtGCTGCAGCTGTGTAAGGGTACAATCCCCTCCTAGAGACAGACACGAGTGCACTCACAATCCGTCCTTTGTTATGGACCATTTTAAAACCACCACTGGCCTCCTGGCATTAGAGGTCACTTCCCACCTTCTTTAGTCTCCTTTCATCTCCCATATAAACGGCAACTCTTTATCAATGTCTCAAGTATTGAGGGATGAGCGAGTAATTGAGAACTATGCCAAGAGCTTGGGAAATGGAGATGTTAGACTGATGGAATCACATGGATAGTGTTTTTACCCTGTTATTCTTGCAGAGCTTCACCCTCTTTTTCATGTTTCAAGTATTTGTGTcccaatgtttttcttttttttttttctccctgtgtgtgttgaCTCGATAGTTTAGATTCCATACAGCAGTTGGTGAAATATATTGAGACAgctgatatttttttaagtgttttatcaGAGAGTGTTATGTATCTGCAGTGCTGGATTAGTCATaccagtggttttttttttttttttacatttttttttccctccagatTAGATGACCTTTCTGGTGTATTCCTCACATCAGTGATAATTGTCTCTCTGTCCTGAGAATGTAGGACTACCTTGATTATGAATTTCAAAATCTGGAATCTGTTTACTAGACATGAAgcatttatccattttttttaaattttttttttttttttttttacaaagcaaATTTCTTCCCAAACATAGAAATCTGAACATGCCCAGGTTTTAAACAATGTGCTTCTCGCAGCTGCTTATGCTCAAACCAATGTATGGGGACAGACAATCATCACTTTTGTTAATGCCTGTGTTTTGCTTTGAGCTTGTGAGGGCATGCATCTGTGATGTTCATAAGTGCTCCACCTTGTGGCCATTTGCTGAGCATTTACTTTTACGGAGGCCAATAGTTTCAACCGCAAAGGGCTGTTGTGGCTAAAGACTTTAATTCCAGCCACATAGAAGTCACACCTAATAGTCACTTAAAGAACAAGTGAAACTGGTTGTGGCCTGTGTTTGGAGTGAAAACCTGTAGCCACACCGGGCTTTTGTGGATAAAATTGAAAGACCCCTAACATAGGCTGTGACCATGTTACTACCGCTTCTGTCCCCACCAAGGTTCAATTCTCagttttaaacaggaagtgaatcaaagcTGAACCTGTTCTTAATGAGGTTATGAGCTCAGGTGTGTAATTCTGTGTTTGTAGAGCCACTGGACAAATAATTTTAACCCAATAAACTTCCTGACTTTCATTAACATGACCGAGCTActgattctgattaaaaaaagtcgAACCGTACATCATGGAGAATGTAATCAGATGAAAAGAACTGACACttgtttttcaattttcattttcttagcttttcttcttttatgtCTCTGAAGCAGGCGGTAGCCCCTTTAAAACTCACAGATGGGTCATGTTTAGACAACAAGGTGAAATGTTGTGAACAGACTTCATCAGATGTGCTATGGACTGCTCTGATTAGATACTGTAATGaccgtgtgtctgtgtgtgtgtgtagtttaagtCCCAATTAGAgaagtctgttttatttttcttttcagatttcTGGAGGGAAATGACTATTGCCTACCTGTCAATGCATTTGTCTATATATCACTTTCAAATGTACGGCCtgactttttgttctctttATCTCATGTTATGGAAGTACCCTCCCATTTCTGATCATTTCATCACATATTCATGTGTTTTCAGAATAAGATTTTGATGTCTTTTACCTATAGATTTTTTAATGTCTTGTATCAAATTGTAGTAAACATAGTTTTCCACACGAATTTGatagtttttcattttaaagccacAATACTGACGTTTTGATAGTTAAAGACAGAATTTAATCAAAACATGTTTGCATCAATACAGGTGAATTTTGGTTCATAAGTTTAAGAACACAGGTTTAACCTTTCCAGCAGATGGTGCTATTCGGCTACACTCTTATGTACAGACCAAATCTCAATGCAGCCCATAATATCATATCAAAATGTGCTGGTGTTGGATGTTATTTGTTGAACTGATTACTTGTATTGGTGTAGAGAACTGTAAATTTTCCTATTAAAAACTGAGATCATtgagcagcaaaaaaaaaa

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305741 lncRNA downstream 11868 20470193 ~ 20487410 (-) True G258232
TU305692 lncRNA downstream 97018 20376338 ~ 20402260 (-) True G258198
TU305690 lncRNA downstream 126098 20364055 ~ 20373180 (-) True LOC117599243
TU305681 lncRNA upstream 2470 20511166 ~ 20516713 (-) True G258189
TU305676 lncRNA upstream 9729 20518425 ~ 20520203 (-) False nfe2
TU305751 lncRNA upstream 13856 20522552 ~ 20523645 (-) True G258242
TU305773 lncRNA upstream 81062 20589758 ~ 20593161 (-) True G258258
TU305785 lncRNA upstream 101615 20610311 ~ 20611059 (-) True G258268
XM_034311842.1 mRNA downstream 212065 20274622 ~ 20287213 (-) False calcoco1a
XM_026920639.2 mRNA downstream 212066 20274622 ~ 20287212 (-) True calcoco1a
XM_026920084.2 mRNA downstream 277165 20205272 ~ 20222113 (-) True nr1d4a
XM_026921228.2 mRNA downstream 297533 20198866 ~ 20201745 (-) True mfsd5
XM_026921330.2 mRNA downstream 319588 20155949 ~ 20179690 (-) True jph2
XM_026920986.2 mRNA upstream 10649 20519345 ~ 20525464 (-) False nfe2
XM_034312052.1 mRNA upstream 10649 20519345 ~ 20525464 (-) True nfe2
XM_026921338.2 mRNA upstream 48908 20557604 ~ 20566595 (-) True znf740b
XM_026921339.2 mRNA upstream 51419 20560115 ~ 20566597 (-) False znf740b
XM_034312135.1 mRNA upstream 51419 20560115 ~ 20566596 (-) False znf740b
TU305550 other downstream 227371 20252170 ~ 20271907 (-) True G258077
XR_004579656.1 other downstream 379329 20110463 ~ 20119949 (-) False mlh3
XR_003403201.2 other downstream 390068 20100999 ~ 20109210 (-) True kansl2
XR_003403208.1 other downstream 395367 20103774 ~ 20103911 (-) True LOC113530994
TU305224 other downstream 877718 19615527 ~ 19621560 (-) False magi3a
TU305957 other upstream 322132 20830828 ~ 20867958 (-) False LOC117599256
TU306159 other upstream 660290 21168986 ~ 21169698 (-) True G258580
trnaq-uug_7 other upstream 845930 21354626 ~ 21354697 (-) False trnaq-uug_7
XR_004579748.1 other upstream 1420479 21929175 ~ 21954605 (-) False fyco1a
TU306971 other upstream 1937334 22446030 ~ 22449427 (-) True G259306

Expression Profile