RNA id: XM_026920996.2


Basic Information

Item Value
RNA id XM_026920996.2
length 6096
RNA type mRNA
GC content 0.44
exon number 23
gene id si:dkey-178k16.1
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14204846 ~ 14264181 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGGTGTTTCCGCTAGTGGCGCGCGCACCCGCCCCTTCAGCGCCTCTCCTCATCCATCTCACCGGCTATTCTTCCCTTTTTCGCCCTCTCCCCTATTCTCTCGcgcgttctctctctctctctctctctctctctcttggacCGCTTTGTCGCACCAAAGCGAAGGGAAGGACGGTGTCTGTCTGAGCACATTGGCTGTCCCGAACCCTCCATGCTCGTCTTCTGGACGAAAATCCGAGCGTCATTCCTGGAAATAGAGGACTATAAGTACTCAGAATGTCAGAGAAGGGTTCCACGTCCGATGTGAAGAACGCCATGGAGGGAGACAGCAAAAGAACAAGAGATCAGGATCACGACTCAAAGATATCTGATGAGCACCGAGACACAGATGACTCATCTGAGAAAACGTCCAGCAGGATGTCCAGATCTCCACAGAAATCCTCCAAAAAACCAAAGACAGTGCCCGTGAAAGTCATGCTGTTGGATGGATCCGAATATGAAACTGGAGTGGAGAAATCCTGTAAAGGTCAAGTCTTGCTGGATATAGTGTGTGAGCATCTGAACCTGCTGGAGAAGGACTACTTTGGCCTGACCTTCTGTGATGCTGACAGTCAAAAGAACTGGCTGGACCCATCAAAAGAGATCAAAAAACAAATTCGGGTAGGCTCCTGGCAGTTTTCATTTGCTGTCAAGTTCTACCCCCCTGACCCCTCACAGCTGATAGAAGACATCACTCGgtaTTACCTGTGTCTTCAGTTAAGAGAGGACATGCTGTCGGGGCGCTTGCCATGTTCATTTGTCACACACGCTTTGCTAGGCTCATACGCCGTGCAGGCTGAGCTGGGAGATTTTGACCCAGAAGAGCACGGACTTGACTACATCAGTGATTTCCGCTTCGCTCCCAACCAGACACGAGAGCTGGAAGAGAGGGTTATGGAACTCCACCGCACCTACAGGGGCATGAGTCCTGCGGAAGCTGAGATGAACTTTCTGGAGAATGCTAAAAAGCTCTCAATGTACGGAGTTGATCTTCATCATGCTAAGGACTCTGAGGGCATTGACATAATGTTAGGTGTGTGTTCAAGTGGCCTGTTAATCTACAGAGACCGTTTGCGCATTAACCGTTTTGCCTGGCCCAAGATTCTCAAAATTTCCTATAAGAGAAGCAACTTTTACATCAAAATCCGCCCTGGAGAGGTAGAGAAAAAGTATGAACAGTTTGAGAGCACCATTGGCTTTAAGCTGCCCAACCATCGAGCTTCCAAACGCTTGTGGAAGGTCTGCATTGAACACCACACCTTTTTCAGGTTGGTCTCTCCTGAACCCCCACCCAAAGGTTTTTTGGTGATTGGCTCAAAGTTCCGCTACAGTGGGCGGACCCAGGCCCAGACTCGTCAGGCGAGTGCGTTAATTGACAGGCCGGCCCCTCAGTTTGAGCGATCGGCTAGCCGGAGGTACTTACTCTCACGCAGTCTCGAAGGAGCATCTGCTCTGGGCGATACAATGGACAGACTCTCCCAGCACACCGCCAGTGACCCTGCACATAGCCTCTCCAGAGACGATCTGGACCGGGACTACATGGAGCCTAGTCAGGAGGATCTGGACCAGCAGCTGAAGCAAACTGTAGATAAGAGAGATGCTACTCCATCAAAGGCCATGGGGGAGGAGCCAGGCTCTCCTCTAGACTCTAAGGCTGAGTCGGACCAGGACTTGGCCCCTCGCCCGAAACAGGAGCAGTTCCTGGATAAGCCTGAAGATGTACTGCAAAAACATCAGGCAAGTATCAACGAACTGAAGAGAGCGCTGAGGGAGCCCAACAGCAAGCTAGTCCACAGAGAGAAACGTCTGTCTGTGACCTCTTCTGGCAGCACTCCAGAGAAAAAAACTGCCTCTGAGGAGCCCATATTTATTGAGGAGCAAGATGGTTGTCAAACAGACCTGACCCTCAGttcaaaagaggaaaagaacaaGAAACCTGCTAGAATAGAGCCACCACTCACTCAGCATGAAGGAGAGCAAGTGATTAGTGGGAAAATCTGTATGTCTCGTGTTGACCCAATGGGAAGCCATACCAGAAAATCAAATAAGAACTCCATCCCATCCCCAGAGAAGCCTCAAAGAACCAAGATTTATGCATTAAAGAATGAACATATCCATGAAACACATTCTGCTGGCAAGAACATAAATGACAATGGACTTCCACATGAGAAATATTTGGAGAACGATATTCATGCAAATGGCTATGATGAATATCCAACAGAGAAGCACTGGACCGAAAGGAGATATGTTGGCACAACTCATGTAGAAGATAGTGTAAATCTAGATTTTTGGGACTATGAGGACAGAAACCAGGGTGAGGTTTCTCCCAATGCAGTAATAGACAAACATATGCGAGATCAGTATAATGGAAGCAGATGGGAGAGACAATCTGTGGAAAGTACAGACAACCAAATTAAAACCATTAGTAAAACCAAAACAGCTGAAAACAAGGTAGTTCTAAGGAGTGATTCAGTTAAGAGTAATGCTGCTGAACCAGAGCCAAAGCGAGTTGTTCCCTTGAAACCAGAGAGGTCCAAAAAACTAAAAGGAAAACATGGAGTCAAAGGTCAAAGTGAAAGAGACACAATCTGTTCTAATTTATTTGATGAGACAAAAGGAACAAAGTCAGAGGAATCATCTGGAATTGAAAAAATACCATCTTTTTTCACACAGACAAGTATGTCTTCAGCCATGGATAGCAGCGCAGCAGTTCCTAAAAGAGACTACACAGCTAATGGCTATGTTAGGGAAACGAGAAAACGCAGCCATCCTCCACAAACATACAGGACACAATTTCAGGATACAGAAGACAACACTGATCAGAGACTTAGTGAAGTTGATGACCAAGCGTGCTTTGAAGATACTTCCCCACTGTCTGATTTCCCATCAAACTTAATAATTTCTGGCTTTGAGCAAATGACTCCTTTGTATTCTCATGTAAAGTCCCAGAAGACGAGAGAGATGCGACAAAAACAGTCTTCTCCTACTGACTCCAGCCACAGCCTTCTCAAGAGTTCCAGCTTAGAATCAGCTCAAAAGAAACCATCGAGAGAGCCATGGGAACGGCGTCTGGGATCAGTGTCCGAGGATGACCCTGACCCAGAGAATCTGTATCTCAAGGAGACCCACCTGGGCATTGAACGCAAATGCTCCAGCATCACCGTTAGCTCCACTTCCAGTTTAGAGGCCGAGGTGGACTTCACTGTCCTCATGGACCTTCAAACAGGGATGGAAGAGTTCTCCAGAGGAATGTCGGAGTTAGGAGAGAAGGACTTCTCACCTGAACTTTGTGTTTCAGACCGGCCAGCACATCCGGCCTTCATGCTAGGGTCTGAGCCCATCATCATTCCACAGGAGAAACCTGCAGAACTATTAAGGTCGGTGGAAGAACCGAAGCCCATTGTAGAACAGAAGCCTGTGGAGCAGCGCAAACCTGAGCCTTTTGTGCCAAAAAAAGCTCCAAGGTCAGTGAAGGCTGCTCAGGCTTTAAAAAAGGAATCTGCAGAGCTTGTTCACATCCAGTCAGTAAGGCAAGATGGTTCAGACACAGCATCTTTACAGATCCATAGCAGAGACAGCAGTGATATAATTGCCTCTCAAGCTCTAAGAAAAACAGAAGTCAAGACTGAGACGCAGCCAAATGGGTCAGAGGTTACCACAACCATTATGGAGATAGCAGACCAGGATCATGGTATGAGTGGTCTGCGTGAAGCTCCATTCTCAGTGACAGAGAGGATCTCTCCTGTGAGCTTCGGATCTTTGGCCAGAGAGGGTTCTGGGTCTCCTCTATTTGTAACAGAGAATGTGACGTCAGCCACAACACATGTTACCAAAACAGTAAAAGGAGGATACTCAGAGACAAGAATTGAGAAGAGGATTATCATTACTGGCGATGATGATGTTGACCAAGATCAAGCACTCGCCATGGCAATAAAAGAAGCCAAGCAGCAGCATCCTGACATGTTGGTAACCAAGGCCATAGTTGTCAGGGAAACAGAATCTTCCACACAAGATGCACATGAGCAATTCAAGTCCTGATCTATTAGGCTGTCAGGACTGTTCGCAGGAGAAGTACTGTATTTTAAACCACCTACTGATGGTGGATCATGGACACCCACTATCCAGCACCCATCAATCCTAACCCACAGGATCCAGCGCCTCCCCAGTGGCGTACAGATATACATCCTCCCTGTAACAATTCAAACCTCACATCTGTGCAcccatctgtctgtttttacATTCAATGCGGTCATGCTGAATGGGAAACTTTTCTCTGTCTAGTTCTCACATACAACAGGCACCAAAGGTGGCATTGTGCATGCCATGCTGAACCATTCTACCATTTGAAACTGATTATTTCTCTTGGTGTAAGGAGATCTATTGCATAGGCAAAAGGGAAGGCAACATATGAGCTTATTTTGTAATCATCAGACTATAGGAAAAGTAACTTCTCACAGAACACATATGACTGTTACTTGAACAGCTAAAGCTACAATGCTGTTAAATTTTAATTCTCAgactatttgtgtgtgtgtgtgagatgatggtCATATGAAAGAAAAGGCAACAAATGGGCTAAAAGATGGGCACCATCAGACCAACTACAGTGGATCAGTGCACTCATCAGATAGACACATATGGTGCTGACAGGGAATGGACAGATTGCTGGACACAAGGACAACAATTTGTGCCAATTATTGAAAGAAGACACTTCTGGGAAGCAGTGGTCTTctgagaggagaaaagagaaataaacaagaaacagCTTTGAAACAGGATGACACAAATACTCAACATAAAGTGAAGATAACCATTGTCATTGAAGATAAGTACTCCATAAAAATCTCTATAGGGCCTTGTTCCTGGAAAGTGTGATGttgtacataatgtataatTGGCCCTGGATAGCCCTTCATTAATCCTGTATGATTCATGTTCAGGttgcaaaataaaattttcctttaaatgagGTGCTAATTCCCAAGGTGAAAACcaattcctgaaaaaaaaaaaaaaaaaaaaatacacatttcatattattaaGAAAATCCCTTCACTTCTCTCCAATCAGGCTTTAATCAATCTGGTATTTATGTAATATGAACATGTTTATATGAATGGTTTTGCACAAGAATTGAAGAACCAAtgataatattttgttttatataggTATTTTAAACAAAGAGAAAATGCCCTAGATATATTGACCCTGATGCTAGCAAAGCAGAATAAAGTGTGTTGAATAATTGTGTCATATGCATGTCAAACTGCCCAATTATTAGTGTTACTagttttttaggaaaaaaaaaaatcaaagaagaTACAGATACTATTATTTGGCTTTTCAAATACCTCCAgtctcatctttctttctttcttttttttttttaaggaaaaactGTTCATGCTAATTCACCATGTCCCATAAGCAAATGTCTTTACAGTTTCACAGTGTTTCAATATAATGATTGCTTACTCTGTGGTAGATGTCATGAGcgttttatttctattttcagtGGATTGTTTGTGCAGTGATTCTCCTTAAATTCTTCCCTCTGTAACACTAGTGCTGGAACAGCCTAAAGAATGAATGCAGATGTCTGTTGTAGTGGTTTATAGGTGAATGGGCCTTAAATGGTACACGCATTACTGTGCTTTAAAATGATACTTGGGGAAACTGTGTAAGAATGAAGAATCTCATGCTCTGATTTTCACTAGAGGGCTGAACGTGACTTGTAGAGGATTGTGTTATGGACCTTTAACAAACAATTGTACCATGTGAATGTGTCACATAGGCACACCTTTCTCAACTTGAAAATGTCATGGGTAGAATTAGAACATTAAGACATTTAAGCAGTACATTTACAGACTTAAATGGAGTGGTTTTCCAGACAAGgttgaaaataaaacatcataatcctagaagaataaaaatatggATTTCCTACTATTTAACTTCCTAGCTTTTAGATCCTTCATTGAATTAAGATGCTATCTTTCataaaattaacacaaattaacAGTTAGAAAACAGTAATTACAACTTATAGAAATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301465 lncRNA upstream 136386 14068259 ~ 14068463 (+) True G254653
TU301453 lncRNA upstream 148887 14055216 ~ 14055962 (+) True G254644
TU301436 lncRNA upstream 172516 14032116 ~ 14032333 (+) True G254633
TU301262 lncRNA upstream 372158 13827684 ~ 13832691 (+) True G254472
XR_003403196.2 lncRNA upstream 477467 13723365 ~ 13727382 (+) True LOC113530938
TU301817 lncRNA downstream 179008 14443189 ~ 14477709 (+) True G254967
TU301818 lncRNA downstream 208490 14472671 ~ 14477709 (+) False G254967
TU301815 lncRNA downstream 342898 14607079 ~ 14615274 (+) True G254966
TU301850 lncRNA downstream 358136 14622317 ~ 14673952 (+) False G254991
TU301852 lncRNA downstream 405623 14669804 ~ 14673952 (+) True G254991
XM_026920146.2 mRNA upstream 43244 14157174 ~ 14161605 (+) True fam217b
XM_026920384.2 mRNA upstream 84145 14087075 ~ 14120704 (+) True phactr3a
XM_026920386.2 mRNA upstream 133005 14070229 ~ 14071844 (+) False wfdc2
XM_034312167.1 mRNA upstream 137430 14062431 ~ 14067419 (+) False snx21
XM_026921298.2 mRNA downstream 100232 14364413 ~ 14440337 (+) True cntn3a.2
XM_026921299.2 mRNA downstream 100736 14364917 ~ 14440337 (+) False cntn3a.2
XM_026921303.2 mRNA downstream 226995 14491176 ~ 14508430 (+) False rybpa
XM_034312159.1 mRNA downstream 227144 14491325 ~ 14508430 (+) True rybpa
XM_034312176.1 mRNA downstream 256078 14520259 ~ 14528718 (+) True eif4e3
TU301462 other upstream 132633 14070269 ~ 14072216 (+) True wfdc2
TU301463 other upstream 132633 14070269 ~ 14072216 (+) False wfdc2
XR_004579688.1 other upstream 132691 14070228 ~ 14072158 (+) False wfdc2
XR_003403145.2 other upstream 1353854 12837051 ~ 12850995 (+) False rbbp8l
XR_004579730.1 other upstream 1820275 12366743 ~ 12384574 (+) False LOC113530266
TU301848 other downstream 405623 14669804 ~ 14673952 (+) False G254991
TU301849 other downstream 405623 14669804 ~ 14673952 (+) False G254991
TU302131 other downstream 852931 15117112 ~ 15120212 (+) True rps21
TU302132 other downstream 852931 15117112 ~ 15167668 (+) False rps21
XR_004579698.1 other downstream 1946469 16210650 ~ 16229406 (+) False LOC113530889

Expression Profile