RNA id: XM_026921005.2


Basic Information

Item Value
RNA id XM_026921005.2
length 1862
RNA type mRNA
GC content 0.43
exon number 2
gene id ppp1r3da
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14151427 ~ 14153632 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGGATCGGAAGTTTATGGTGAGACGATATGATATGACGCACAAACTGCTTCCCGGTGACATTTCACAGATATGTGGCATTACTGAGCTAGCGAAAAACTTGAAAAAGGGTGTAGGAAAGCTTTGTTGTACCCTGGATATGGCTTGTTCTACCACACACAGCCAGGAAAATACATCCTCAGGAGAATCAGATGATGAGCTATTTTTTGTTGGGGTGTCGGATATCTCAAAGCAAGCTTCCCGTCTTAACCTTAGCGACAAACCATGGTCAAACCCcaaaggagagagaaagcatgTGAAGATTCTTCCACCTAGTCCCACGGTGCCACAACTGAGACCGACAGGCCGCAGTTTCTCCTGTGAACCTCCTCCCAAACCCATCATCCAGCGCCGGACCCAGTCTCTGCCGTCGCCTTCAGAAAGGCGGAGGCTCAGTCGGAGAATCGGGGTCCGGTTTGTGGACTCACTGGGAATGGACCTCGAAAATGTTAAGGTTTTCAAAAGTGGAGAAGACCCGTTTGTGCCAGAACATGTTCTGTTTAGACTTTTGATGAACGCAGAACTCGCAGCCAACAAGAGCTTGGAGATTTCCCTACCCTATTTGAAACCTGTGTTCACTGAGCAACCTGGTGACTGTTCCAAGTTCCTGGAACGTTTGTGTAACCAGAAAGTGTGCCTGGAACGTGTTTTATGCTACGAGCCCGGCATCATTGGGATTGTCCAAGTGGTCAACCTGGCCTTCGAGAAAGAGGTGATCATTCGGTACTCTTTCACAAACTGGAAGAGCTGTGCTGAAAACAAGGCTTACTGGGTTGCCAATAAATACTTTGAAGGCCTTTCCAGTGGATGTAGCTGTGACAGTTTTCGGTTCCATCTTCCAGTTCCACCGTTCATCCTACACCCTGGAGCAGTGCTGGAGTTTGCGATCTGTTATAAAGTGCAGGGCACTCAGTTTTGGGACAACAATGAGGGACAAAATTACAAGTTAGTCTGCCAGAGCTACAAAATCCCTGTGCCCAAGGAATGTGAAGATAGCATGATACATTTTGTCTGAGTGCTCTACTGAGTcattgtatgtactgtatacactCAGTGGCCACTTTATTCACTACACCTGCCTTTTTATTTGGTAAAATTATATGCTGTAGAtgcactttgtaggtatacGTTTAGTGAAtgtacacctttttttttttaatgcactatTTGTTAATCAGCTTTTCATTAGCGTAAAGGGATTATCACAGGGCAATCTCTGAcaagatattatttgggtggtggaccaTTCTCAGCATATCAGTTATACTAACGTGGTAATGGTGGTGGCACAgttttgtgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtggtatTGGTAGGAGTGTCTCAGGCGCAGAAGTATTGCTTAGGTTTTAGCACTATGTACACTtaacctaataaagtggtcactgAGTGTCCGCTATTCACCAGCAcatgtttactttattaaaatcGAGTTACAATCTGTTTGCCAAATCATCTGACATAGTTGTTGAAAGAGTCAGGACTCAGGTATCCAAATAACTATCATGACTATGTACTTTTGCAGTTCTATACAGCTGTGCCACCAGTCTGACTTTTTGTCACAGAGCAAAATATGAGTGCAGTGTTTGTTTAACTTGTTGTTAAACTACTGAGTAGAATGTAGGCTATATTcctttttctttacaaaaattATGAGTTATAAACCTCTAAATCACTATTTGCCAAATCCTCTTTTATCTGAAGTGCCTGAGAAATGGTTATAAGTCACAAAATTACATTAAACTCACAGTTTTGTATACTAAGCAATAAATTCTTTACTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301364 lncRNA downstream 451022 13700009 ~ 13700405 (-) True G254567
TU301398 lncRNA downstream 454807 13692797 ~ 13696620 (-) True G254600
TU301397 lncRNA downstream 485954 13664893 ~ 13665473 (-) True G254599
TU301384 lncRNA downstream 536764 13614428 ~ 13614663 (-) True G254587
TU301365 lncRNA downstream 560457 13590500 ~ 13590970 (-) True G254568
TU301888 lncRNA upstream 377403 14530825 ~ 14532588 (-) True G255020
TU301946 lncRNA upstream 546802 14700224 ~ 14704270 (-) False G255071
TU301947 lncRNA upstream 546802 14700224 ~ 14704270 (-) True G255071
TU302215 lncRNA upstream 722222 14875644 ~ 14878506 (-) True G255306
TU302322 lncRNA upstream 1026964 15180386 ~ 15180640 (-) True G255403
XM_034311647.1 mRNA downstream 846 14128963 ~ 14150581 (-) False LOC113530423
XM_034311649.1 mRNA downstream 846 14129766 ~ 14150581 (-) False LOC113530423
XM_034311648.1 mRNA downstream 846 14129766 ~ 14150581 (-) False LOC113530423
XM_026920383.2 mRNA downstream 65373 14072159 ~ 14086054 (-) True pigt
XM_026921077.2 mRNA downstream 90981 14055402 ~ 14060446 (-) False haus8
XM_026921096.2 mRNA upstream 9104 14162526 ~ 14170918 (-) False ttll9
XM_026921095.2 mRNA upstream 9110 14162532 ~ 14172104 (-) True ttll9
XM_034312019.1 mRNA upstream 23804 14177226 ~ 14197008 (-) True edn3b
XM_034312057.1 mRNA upstream 124672 14278094 ~ 14322302 (-) False chl1a
XM_034312056.1 mRNA upstream 124672 14278094 ~ 14322296 (-) False chl1a
XR_004579685.1 other downstream 846 14129216 ~ 14150581 (-) False LOC113530423
XR_004579686.1 other downstream 846 14129216 ~ 14150581 (-) False LOC113530423
XR_004579684.1 other downstream 846 14129216 ~ 14150581 (-) True LOC113530423
XR_004579687.1 other downstream 4596 14129216 ~ 14146831 (-) False LOC113530423
TU300417 other downstream 1992067 12158772 ~ 12159360 (-) False ptk6b
TU301948 other upstream 545850 14699272 ~ 14704270 (-) False G255071
XR_003403204.1 other upstream 1334335 15487757 ~ 15487859 (-) True LOC113530990
TU302676 other upstream 1561613 15715035 ~ 15820154 (-) False znf512b
XR_003403156.2 other upstream 2494401 16647823 ~ 16695030 (-) False fam50a
XR_004579669.1 other upstream 2659962 16813384 ~ 16831259 (-) False si:ch211-210c8.6

Expression Profile